Wall clock time and date at job start Tue Mar 31 2020 12:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.47235 * 2 1 4 4 C 1.52999 * 109.47461 * 120.00119 * 2 1 3 5 5 C 1.52994 * 109.46957 * 65.81779 * 4 2 1 6 6 C 1.52994 * 109.47211 * 66.18850 * 5 4 2 7 7 C 1.53006 * 109.47345 * 183.17218 * 6 5 4 8 8 C 1.52999 * 109.47242 * 65.86434 * 7 6 5 9 9 C 1.52999 * 109.47116 * 185.86700 * 7 6 5 10 10 N 1.46511 * 109.47154 * 186.18699 * 5 4 2 11 11 C 1.34769 * 119.99876 * 81.62688 * 10 5 4 12 12 O 1.21545 * 120.00238 * 4.84059 * 11 10 5 13 13 C 1.47883 * 119.99992 * 184.84528 * 11 10 5 14 14 C 1.39928 * 120.02374 * 359.97438 * 13 11 10 15 15 C 1.38336 * 120.35674 * 180.02562 * 14 13 11 16 16 C 1.37754 * 120.41210 * 359.97438 * 15 14 13 17 17 C 1.40748 * 120.03772 * 0.02562 * 16 15 14 18 18 C 1.41436 * 120.17186 * 180.02562 * 17 16 15 19 19 H 1.08001 * 120.00446 * 29.12482 * 18 17 16 20 20 C 1.39934 * 120.00081 * 209.10912 * 18 17 16 21 21 N 1.30833 * 120.00015 * 10.18383 * 20 18 17 22 22 Si 1.86801 * 120.00431 * 190.17697 * 20 18 17 23 23 H 1.48507 * 109.46929 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47196 * 119.99906 * 22 20 18 25 25 H 1.48494 * 109.47461 * 240.00717 * 22 20 18 26 26 C 1.38993 * 120.02963 * 180.02562 * 13 11 10 27 27 H 1.08999 * 109.47388 * 64.27324 * 1 2 3 28 28 H 1.09003 * 109.46980 * 184.27470 * 1 2 3 29 29 H 1.09000 * 109.47336 * 304.27499 * 1 2 3 30 30 H 1.08998 * 109.47086 * 240.00032 * 2 1 3 31 31 H 1.08994 * 109.47129 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.46613 * 300.00330 * 3 2 1 33 33 H 1.08994 * 109.46563 * 59.99966 * 3 2 1 34 34 H 1.09000 * 109.46870 * 305.81974 * 4 2 1 35 35 H 1.09000 * 109.47627 * 185.81952 * 4 2 1 36 36 H 1.09000 * 109.47683 * 306.18402 * 5 4 2 37 37 H 1.08998 * 109.47375 * 303.16801 * 6 5 4 38 38 H 1.09001 * 109.47449 * 63.17181 * 6 5 4 39 39 H 1.09004 * 109.46679 * 305.86508 * 7 6 5 40 40 H 1.09000 * 109.47056 * 59.99684 * 8 7 6 41 41 H 1.08995 * 109.46871 * 180.02562 * 8 7 6 42 42 H 1.09008 * 109.46882 * 300.00192 * 8 7 6 43 43 H 1.08995 * 109.47616 * 64.92796 * 9 7 6 44 44 H 1.09005 * 109.46731 * 184.93190 * 9 7 6 45 45 H 1.09003 * 109.47158 * 304.92993 * 9 7 6 46 46 H 0.96995 * 119.99648 * 261.63081 * 10 5 4 47 47 H 1.07990 * 119.81875 * 359.97438 * 14 13 11 48 48 H 1.07995 * 119.78984 * 180.02562 * 15 14 13 49 49 H 1.07999 * 119.98041 * 179.97438 * 16 15 14 50 50 H 0.96998 * 120.00045 * 179.97438 * 21 20 18 51 51 H 1.08008 * 120.19767 * 359.69852 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6530 -2.1997 1.1782 6 6 2.4009 -2.8678 0.0228 7 6 1.9547 -4.3263 -0.0981 8 6 0.4823 -4.3768 -0.5109 9 6 2.8052 -5.0339 -1.1549 10 7 2.0098 -2.8590 2.4370 11 6 1.1917 -2.7626 3.5036 12 8 0.1174 -2.2042 3.3971 13 6 1.6011 -3.3363 4.8037 14 6 2.8376 -3.9797 4.9268 15 6 3.2272 -4.5192 6.1396 16 6 2.4033 -4.4290 7.2399 17 6 1.1559 -3.7855 7.1351 18 6 0.3080 -3.6909 8.2631 19 1 0.7316 -3.6593 9.2561 20 6 -1.0799 -3.6377 8.0927 21 7 -1.6042 -3.8745 6.9176 22 14 -2.1843 -3.2289 9.5428 23 1 -1.3512 -3.0045 10.7515 24 1 -2.9611 -1.9995 9.2423 25 1 -3.1182 -4.3572 9.7874 26 6 0.7576 -3.2377 5.9040 27 1 -0.3634 0.4461 -0.9258 28 1 -0.3633 -1.0248 0.0766 29 1 -0.3634 0.5787 0.8492 30 1 1.8933 -0.5138 -0.8900 31 1 3.1299 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.5941 -0.2711 2.1361 35 1 3.1250 -0.6319 1.3028 36 1 0.5789 -2.2867 1.0143 37 1 2.1792 -2.3420 -0.9059 38 1 3.4733 -2.8306 0.2143 39 1 2.0800 -4.8254 0.8629 40 1 0.3571 -3.8776 -1.4718 41 1 0.1644 -5.4158 -0.5965 42 1 -0.1236 -3.8726 0.2421 43 1 3.8414 -5.0751 -0.8195 44 1 2.4309 -6.0468 -1.3039 45 1 2.7490 -4.4840 -2.0944 46 1 2.8349 -3.3647 2.5026 47 1 3.4908 -4.0561 4.0703 48 1 4.1837 -5.0134 6.2244 49 1 2.7143 -4.8531 8.1832 50 1 -2.5663 -3.8381 6.7995 51 1 -0.1960 -2.7384 5.8146 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000504649290.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:15 Heat of formation + Delta-G solvation = -62.299045 kcal Electronic energy + Delta-G solvation = -27265.867516 eV Core-core repulsion = 23742.079401 eV Total energy + Delta-G solvation = -3523.788115 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.67143 -37.87527 -36.70505 -35.71184 -33.80784 -33.43921 -30.64973 -29.44473 -29.07757 -27.30166 -27.08413 -26.33360 -25.28959 -23.20015 -21.47963 -20.86411 -20.29586 -19.53801 -19.30288 -17.72797 -16.18872 -15.90748 -15.36875 -15.09620 -14.93738 -14.61462 -14.40191 -14.00088 -13.85753 -13.57937 -13.50033 -13.17370 -12.83455 -12.58204 -12.48929 -12.42183 -12.28468 -12.17134 -12.05761 -11.74243 -11.60179 -11.54024 -11.14760 -11.07983 -11.04105 -10.84411 -10.77667 -10.70046 -10.56130 -10.47204 -10.40843 -10.19874 -9.95496 -9.67143 -9.25290 -8.93743 -8.51370 -7.60222 -7.45448 -6.71464 -4.41381 2.23567 2.82968 3.09923 3.14681 3.14812 3.74599 3.91071 3.96029 4.61690 4.68586 4.79407 4.85851 4.95804 4.97746 5.02274 5.33053 5.37008 5.51658 5.54350 5.58022 5.61685 5.62292 5.68534 5.73429 5.77104 5.81322 5.87759 5.89645 5.92912 5.97183 6.04169 6.07118 6.11503 6.17285 6.23745 6.27857 6.32704 6.36478 6.49377 6.50058 6.72902 6.97552 7.02651 7.06114 7.24852 7.40675 7.71186 7.78922 7.94858 8.15926 8.23485 8.53808 8.84435 8.85640 9.03156 10.22510 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.013102 B = 0.003465 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.536827 B = 8079.649735 C = 8821.977913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.093 4.093 3 C -0.146 4.146 4 C -0.127 4.127 5 C 0.142 3.858 6 C -0.122 4.122 7 C -0.099 4.099 8 C -0.149 4.149 9 C -0.146 4.146 10 N -0.731 5.731 11 C 0.565 3.435 12 O -0.544 6.544 13 C -0.132 4.132 14 C -0.211 4.211 15 C -0.102 4.102 16 C -0.207 4.207 17 C 0.098 3.902 18 C -0.462 4.462 19 H 0.080 0.920 20 C 0.071 3.929 21 N -0.793 5.793 22 Si 0.912 3.088 23 H -0.261 1.261 24 H -0.272 1.272 25 H -0.274 1.274 26 C -0.085 4.085 27 H 0.049 0.951 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.069 0.931 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.054 0.946 34 H 0.070 0.930 35 H 0.060 0.940 36 H 0.091 0.909 37 H 0.077 0.923 38 H 0.065 0.935 39 H 0.075 0.925 40 H 0.051 0.949 41 H 0.052 0.948 42 H 0.060 0.940 43 H 0.052 0.948 44 H 0.053 0.947 45 H 0.051 0.949 46 H 0.396 0.604 47 H 0.089 0.911 48 H 0.092 0.908 49 H 0.096 0.904 50 H 0.282 0.718 51 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.509 2.891 -14.914 16.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.112 4.112 3 C -0.204 4.204 4 C -0.165 4.165 5 C 0.038 3.962 6 C -0.160 4.160 7 C -0.118 4.118 8 C -0.206 4.206 9 C -0.203 4.203 10 N -0.384 5.384 11 C 0.355 3.645 12 O -0.422 6.422 13 C -0.135 4.135 14 C -0.231 4.231 15 C -0.121 4.121 16 C -0.227 4.227 17 C 0.095 3.905 18 C -0.492 4.492 19 H 0.098 0.902 20 C -0.147 4.147 21 N -0.419 5.419 22 Si 0.736 3.264 23 H -0.185 1.185 24 H -0.197 1.197 25 H -0.199 1.199 26 C -0.105 4.105 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.109 0.891 37 H 0.095 0.905 38 H 0.084 0.916 39 H 0.093 0.907 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.079 0.921 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.071 0.929 46 H 0.231 0.769 47 H 0.107 0.893 48 H 0.111 0.889 49 H 0.114 0.886 50 H 0.093 0.907 51 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 5.491 3.286 -15.109 16.408 hybrid contribution -0.075 -0.196 0.642 0.675 sum 5.415 3.090 -14.467 15.754 Atomic orbital electron populations 1.21894 0.95104 1.02340 1.01323 1.21117 0.96122 0.95927 0.98063 1.21835 1.00667 0.96235 1.01621 1.22050 1.00698 0.95324 0.98468 1.21010 1.00888 0.91023 0.83307 1.21994 1.00038 0.95547 0.98426 1.21127 0.95468 0.95607 0.99579 1.21884 0.95935 1.01637 1.01192 1.21837 0.99573 1.00203 0.98674 1.46025 1.25582 1.55375 1.11451 1.18791 0.83240 0.78289 0.84154 1.90688 1.22402 1.44199 1.84955 1.19549 0.96668 1.04361 0.92912 1.20382 0.96902 1.08782 0.97025 1.20444 0.98018 1.00136 0.93476 1.21164 0.98003 1.06003 0.97486 1.17625 0.91283 0.88666 0.92913 1.19600 0.90629 1.44835 0.94136 0.90214 1.25931 0.99145 0.92548 0.97033 1.69768 1.13858 1.34715 1.23522 0.86199 0.79772 0.78870 0.81516 1.18467 1.19691 1.19948 1.21699 0.99072 0.98413 0.91311 0.93238 0.92205 0.92476 0.91220 0.92921 0.92962 0.92659 0.91149 0.92105 0.89091 0.90491 0.91610 0.90706 0.92970 0.92902 0.92115 0.92847 0.92801 0.92942 0.76864 0.89253 0.88941 0.88620 0.90669 0.84664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.06 37.15 0.34 -1.40 16 2 C -0.09 -1.00 2.81 -90.62 -0.25 -1.26 16 3 C -0.15 -1.43 9.19 37.16 0.34 -1.09 16 4 C -0.13 -1.64 4.39 -26.73 -0.12 -1.76 16 5 C 0.14 1.93 1.79 -67.93 -0.12 1.81 16 6 C -0.12 -1.27 4.06 -26.73 -0.11 -1.38 16 7 C -0.10 -1.07 2.85 -90.62 -0.26 -1.33 16 8 C -0.15 -1.68 8.97 37.16 0.33 -1.35 16 9 C -0.15 -1.30 9.19 37.16 0.34 -0.96 16 10 N -0.73 -11.80 4.38 -54.74 -0.24 -12.04 16 11 C 0.56 12.14 7.64 -12.32 -0.09 12.04 16 12 O -0.54 -13.39 16.02 5.33 0.09 -13.31 16 13 C -0.13 -3.09 5.87 -105.04 -0.62 -3.71 16 14 C -0.21 -4.40 9.55 -38.91 -0.37 -4.77 16 15 C -0.10 -2.18 10.01 -39.72 -0.40 -2.58 16 16 C -0.21 -4.92 9.78 -38.81 -0.38 -5.29 16 17 C 0.10 2.59 5.55 -106.87 -0.59 2.00 16 18 C -0.46 -12.25 9.06 -37.73 -0.34 -12.59 16 19 H 0.08 2.01 7.87 -52.49 -0.41 1.60 16 20 C 0.07 1.81 5.26 -17.34 -0.09 1.72 16 21 N -0.79 -21.25 10.84 55.55 0.60 -20.65 16 22 Si 0.91 19.03 29.57 -169.99 -5.03 14.00 16 23 H -0.26 -5.33 7.11 56.52 0.40 -4.92 16 24 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 25 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 26 C -0.08 -2.27 8.19 -38.44 -0.31 -2.58 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.75 6.29 -51.93 -0.33 0.42 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.07 0.66 6.30 -51.93 -0.33 0.33 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 1.13 8.08 -51.93 -0.42 0.71 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.09 1.42 4.04 -51.93 -0.21 1.21 16 37 H 0.08 0.71 6.35 -51.93 -0.33 0.38 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.93 7.43 -51.93 -0.39 0.55 16 40 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.81 6.53 -51.92 -0.34 0.47 16 43 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.40 5.66 6.46 -40.82 -0.26 5.40 16 47 H 0.09 1.54 6.39 -52.49 -0.34 1.20 16 48 H 0.09 1.67 8.06 -52.49 -0.42 1.24 16 49 H 0.10 2.12 8.06 -52.49 -0.42 1.70 16 50 H 0.28 6.96 8.30 -40.82 -0.34 6.62 16 51 H 0.14 3.93 5.82 -52.48 -0.31 3.63 16 LS Contribution 399.01 15.07 6.01 6.01 Total: -1.00 -28.93 399.01 -9.98 -38.91 By element: Atomic # 1 Polarization: 20.26 SS G_CDS: -8.71 Total: 11.55 kcal Atomic # 6 Polarization: -21.77 SS G_CDS: -2.71 Total: -24.48 kcal Atomic # 7 Polarization: -33.05 SS G_CDS: 0.36 Total: -32.69 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: 0.09 Total: -13.31 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.03 Total: 14.00 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -28.93 -9.98 -38.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000504649290.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.387 kcal (2) G-P(sol) polarization free energy of solvation -28.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds