Wall clock time and date at job start Tue Mar 31 2020 12:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52991 * 109.47547 * 2 1 4 4 C 1.52999 * 109.46861 * 239.99635 * 2 1 3 5 5 C 1.50701 * 109.46668 * 120.00348 * 2 1 3 6 6 C 1.38279 * 119.97740 * 359.97438 * 5 2 1 7 7 C 1.38242 * 120.11622 * 179.97438 * 6 5 2 8 8 C 1.38170 * 120.05578 * 0.02562 * 7 6 5 9 9 C 1.38710 * 119.94186 * 0.02562 * 8 7 6 10 10 O 1.35894 * 120.05470 * 179.97438 * 9 8 7 11 11 C 1.42899 * 117.00418 * 0.02562 * 10 9 8 12 12 C 1.52996 * 109.47477 * 180.02562 * 11 10 9 13 13 C 1.53002 * 109.47137 * 180.02562 * 12 11 10 14 14 N 1.46502 * 109.47105 * 179.97438 * 13 12 11 15 15 C 1.36932 * 119.99856 * 269.99415 * 14 13 12 16 16 H 1.08001 * 119.99710 * 140.53277 * 15 14 13 17 17 C 1.38813 * 120.00245 * 320.53969 * 15 14 13 18 18 N 1.31613 * 119.99754 * 340.27636 * 17 15 14 19 19 Si 1.86799 * 119.99709 * 160.27630 * 17 15 14 20 20 H 1.48500 * 109.47586 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46901 * 120.00004 * 19 17 15 22 22 H 1.48501 * 109.47203 * 239.99632 * 19 17 15 23 23 C 1.46503 * 120.00010 * 89.99692 * 14 13 12 24 24 C 1.52995 * 117.49956 * 183.28887 * 23 14 13 25 25 C 1.52997 * 117.49630 * 114.66550 * 23 14 13 26 26 C 1.38126 * 119.97106 * 180.02562 * 5 2 1 27 27 H 1.09002 * 109.47175 * 300.00228 * 1 2 3 28 28 H 1.08997 * 109.46901 * 59.99633 * 1 2 3 29 29 H 1.08994 * 109.47716 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47552 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.47320 * 300.00111 * 3 2 1 32 32 H 1.09002 * 109.47070 * 59.99707 * 3 2 1 33 33 H 1.09001 * 109.47442 * 300.00779 * 4 2 1 34 34 H 1.09000 * 109.47147 * 60.00328 * 4 2 1 35 35 H 1.09000 * 109.47155 * 180.02562 * 4 2 1 36 36 H 1.08003 * 119.94244 * 359.72603 * 6 5 2 37 37 H 1.08004 * 119.97398 * 179.97438 * 7 6 5 38 38 H 1.07996 * 120.02965 * 180.02562 * 8 7 6 39 39 H 1.09006 * 109.47017 * 300.00383 * 11 10 9 40 40 H 1.08998 * 109.46934 * 59.99829 * 11 10 9 41 41 H 1.09001 * 109.46816 * 299.99618 * 12 11 10 42 42 H 1.08998 * 109.47447 * 59.99813 * 12 11 10 43 43 H 1.09001 * 109.46814 * 299.99446 * 13 12 11 44 44 H 1.08998 * 109.47246 * 59.99517 * 13 12 11 45 45 H 0.97006 * 119.99965 * 175.02127 * 18 17 15 46 46 H 1.08999 * 115.54716 * 329.00091 * 23 14 13 47 47 H 1.08998 * 117.49742 * 359.97438 * 24 23 14 48 48 H 1.08995 * 117.49858 * 145.02491 * 24 23 14 49 49 H 1.09009 * 117.49914 * 214.98116 * 25 23 14 50 50 H 1.08999 * 117.50320 * 359.97438 * 25 23 14 51 51 H 1.08006 * 120.02832 * 359.97438 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7105 1.2305 6 6 1.1332 -1.2354 2.1405 7 6 1.5907 -1.8882 3.2700 8 6 2.9483 -2.0173 3.4924 9 6 3.8522 -1.4907 2.5816 10 8 5.1879 -1.6159 2.7984 11 6 5.5911 -2.3024 3.9850 12 6 7.1189 -2.3429 4.0568 13 6 7.5505 -3.0785 5.3270 14 7 9.0134 -3.1178 5.3954 15 6 9.6972 -4.1624 4.8331 16 1 10.6233 -3.9811 4.3077 17 6 9.2002 -5.4542 4.9382 18 7 8.3195 -5.7465 5.8715 19 14 9.7816 -6.7776 3.7550 20 1 10.7664 -6.1968 2.8074 21 1 10.4208 -7.8788 4.5193 22 1 8.6200 -7.3098 2.9981 23 6 9.7446 -2.0395 6.0654 24 6 11.2732 -2.0982 6.0365 25 6 10.5206 -2.3950 7.3352 26 6 3.3904 -0.8360 1.4488 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 3.1301 1.4424 0.0005 31 1 1.6768 1.9563 -0.8899 32 1 1.6768 1.9562 0.8900 33 1 1.6765 -1.7490 -1.2492 34 1 1.6767 -0.2075 -2.1392 35 1 3.1300 -0.7218 -1.2490 36 1 0.0716 -1.1317 1.9707 37 1 0.8865 -2.2969 3.9795 38 1 3.3052 -2.5277 4.3747 39 1 5.2005 -1.7793 4.8580 40 1 5.2008 -3.3199 3.9665 41 1 7.5098 -2.8658 3.1839 42 1 7.5089 -1.3252 4.0755 43 1 7.1595 -2.5559 6.2001 44 1 7.1605 -4.0961 5.3078 45 1 7.9181 -6.6291 5.9002 46 1 9.2774 -1.0557 6.0199 47 1 11.7348 -2.9394 5.5193 48 1 11.8120 -1.1530 5.9718 49 1 10.5644 -1.6449 8.1249 50 1 10.4868 -3.4310 7.6723 51 1 4.0923 -0.4255 0.7379 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000511594972.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:43 Heat of formation + Delta-G solvation = 0.598697 kcal Electronic energy + Delta-G solvation = -26229.830403 eV Core-core repulsion = 22708.769739 eV Total energy + Delta-G solvation = -3521.060664 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.30629 -39.53466 -38.78138 -36.70588 -35.69412 -33.92975 -31.98166 -31.08642 -30.41726 -28.11266 -28.09976 -27.27795 -25.54475 -23.91425 -23.05279 -22.96865 -22.28151 -21.47235 -20.31238 -18.56987 -18.16018 -17.41990 -17.13428 -16.91916 -16.76586 -16.39675 -15.77970 -15.73595 -15.14093 -15.08435 -14.61932 -14.54137 -14.41541 -14.11923 -13.94134 -13.63503 -13.42157 -13.11222 -13.06143 -12.81781 -12.74007 -12.63556 -12.52781 -12.48832 -12.45090 -12.15191 -11.99109 -11.95359 -11.84828 -11.70279 -11.60361 -11.40349 -11.33077 -11.28370 -10.91497 -10.51356 -9.74134 -9.13054 -8.52622 -7.81829 -5.53565 0.37510 0.51613 1.40589 1.44934 1.54051 2.19633 2.47671 2.80898 3.14016 3.39794 3.50126 3.65894 3.84545 3.97833 4.00430 4.13231 4.14590 4.19616 4.30532 4.36331 4.42050 4.42837 4.46271 4.54198 4.55639 4.61251 4.65779 4.79393 4.81778 4.87799 4.91993 4.93938 5.00489 5.03913 5.05319 5.05617 5.08128 5.18362 5.27627 5.33668 5.35896 5.40195 5.44085 5.44436 5.55002 5.55984 5.65561 5.71764 5.75575 5.90016 6.44851 6.49305 7.13500 7.80950 8.33424 9.07995 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.016511 B = 0.002531 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.447106 B =11060.377883 C =11599.106240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.029 4.029 3 C -0.138 4.138 4 C -0.139 4.139 5 C -0.035 4.035 6 C -0.164 4.164 7 C -0.080 4.080 8 C -0.229 4.229 9 C 0.111 3.889 10 O -0.334 6.334 11 C 0.076 3.924 12 C -0.116 4.116 13 C 0.159 3.841 14 N -0.569 5.569 15 C -0.260 4.260 16 H 0.056 0.944 17 C -0.031 4.031 18 N -0.912 5.912 19 Si 0.950 3.050 20 H -0.269 1.269 21 H -0.291 1.291 22 H -0.287 1.287 23 C 0.100 3.900 24 C -0.182 4.182 25 C -0.216 4.216 26 C -0.165 4.165 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.061 0.939 30 H 0.048 0.952 31 H 0.075 0.925 32 H 0.055 0.945 33 H 0.052 0.948 34 H 0.075 0.925 35 H 0.048 0.952 36 H 0.151 0.849 37 H 0.147 0.853 38 H 0.128 0.872 39 H 0.072 0.928 40 H 0.055 0.945 41 H 0.045 0.955 42 H 0.061 0.939 43 H 0.038 0.962 44 H 0.066 0.934 45 H 0.252 0.748 46 H 0.112 0.888 47 H 0.073 0.927 48 H 0.111 0.889 49 H 0.102 0.898 50 H 0.054 0.946 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.843 12.998 -9.350 23.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.029 4.029 3 C -0.195 4.195 4 C -0.196 4.196 5 C -0.035 4.035 6 C -0.182 4.182 7 C -0.098 4.098 8 C -0.247 4.247 9 C 0.065 3.935 10 O -0.249 6.249 11 C 0.000 4.000 12 C -0.156 4.156 13 C 0.033 3.967 14 N -0.286 5.286 15 C -0.391 4.391 16 H 0.074 0.926 17 C -0.229 4.229 18 N -0.555 5.555 19 Si 0.778 3.222 20 H -0.193 1.193 21 H -0.218 1.218 22 H -0.214 1.214 23 C -0.008 4.008 24 C -0.220 4.220 25 C -0.257 4.257 26 C -0.184 4.184 27 H 0.082 0.918 28 H 0.090 0.910 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.094 0.906 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.094 0.906 35 H 0.067 0.933 36 H 0.169 0.831 37 H 0.164 0.836 38 H 0.146 0.854 39 H 0.090 0.910 40 H 0.073 0.927 41 H 0.064 0.936 42 H 0.080 0.920 43 H 0.056 0.944 44 H 0.084 0.916 45 H 0.061 0.939 46 H 0.129 0.871 47 H 0.092 0.908 48 H 0.129 0.871 49 H 0.120 0.880 50 H 0.073 0.927 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -16.708 12.884 -9.394 23.095 hybrid contribution 0.676 -1.393 0.013 1.549 sum -16.032 11.491 -9.381 21.842 Atomic orbital electron populations 1.21950 0.92507 1.02486 1.02844 1.19581 0.96902 0.95033 0.91430 1.21890 1.00856 0.94232 1.02549 1.21902 1.00833 1.00263 0.96652 1.19891 0.91414 0.96006 0.96225 1.21378 1.00915 1.01115 0.94772 1.21261 0.94251 0.96678 0.97601 1.21480 0.94903 1.06881 1.01471 1.19376 0.82572 0.96148 0.95354 1.86043 1.20901 1.73592 1.44327 1.22711 0.96104 0.95716 0.85432 1.21982 0.91724 1.01085 1.00816 1.20616 0.83454 0.99984 0.92666 1.43520 1.01566 1.21580 1.61969 1.19182 1.07506 0.85514 1.26864 0.92625 1.25852 1.00298 0.98743 0.98044 1.70170 1.32612 1.21176 1.31536 0.85502 0.77934 0.79534 0.79274 1.19328 1.21772 1.21370 1.21547 0.90744 0.92549 0.95996 1.23025 0.95268 1.02524 1.01229 1.23251 1.09274 1.00585 0.92551 1.20361 0.96268 1.04559 0.97198 0.91776 0.90998 0.91979 0.93262 0.90649 0.92634 0.92891 0.90596 0.93324 0.83131 0.83552 0.85442 0.90973 0.92677 0.93626 0.92012 0.94381 0.91610 0.93914 0.87067 0.90810 0.87087 0.87954 0.92722 0.85771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 7.13 71.98 0.51 -1.12 16 2 C -0.03 -0.47 0.85 -52.93 -0.05 -0.51 16 3 C -0.14 -2.05 8.29 71.98 0.60 -1.45 16 4 C -0.14 -2.17 8.29 71.98 0.60 -1.57 16 5 C -0.04 -0.76 4.76 -19.88 -0.09 -0.85 16 6 C -0.16 -3.24 8.97 22.28 0.20 -3.04 16 7 C -0.08 -1.75 10.04 22.25 0.22 -1.52 16 8 C -0.23 -6.23 9.04 22.37 0.20 -6.03 16 9 C 0.11 3.40 6.69 22.51 0.15 3.55 16 10 O -0.33 -11.73 10.14 -92.35 -0.94 -12.66 16 11 C 0.08 2.60 4.74 71.98 0.34 2.94 16 12 C -0.12 -4.61 5.91 30.59 0.18 -4.43 16 13 C 0.16 7.25 5.33 86.38 0.46 7.71 16 14 N -0.57 -28.03 2.75 -678.04 -1.86 -29.90 16 15 C -0.26 -14.10 8.47 84.03 0.71 -13.39 16 16 H 0.06 3.06 6.75 -2.91 -0.02 3.04 16 17 C -0.03 -1.73 4.98 84.86 0.42 -1.31 16 18 N -0.91 -52.41 11.50 21.65 0.25 -52.17 16 19 Si 0.95 44.64 29.60 68.60 2.03 46.67 16 20 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 21 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 22 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 23 C 0.10 4.17 6.56 44.99 0.30 4.47 16 24 C -0.18 -7.02 9.80 30.59 0.30 -6.72 16 25 C -0.22 -8.67 10.36 30.59 0.32 -8.36 16 26 C -0.17 -4.43 8.65 22.37 0.19 -4.24 16 27 H 0.06 0.69 7.51 -2.39 -0.02 0.68 16 28 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.06 0.70 7.51 -2.39 -0.02 0.68 16 30 H 0.05 0.83 7.38 -2.39 -0.02 0.81 16 31 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.05 0.86 7.39 -2.39 -0.02 0.84 16 36 H 0.15 2.14 5.89 -2.91 -0.02 2.12 16 37 H 0.15 2.38 8.06 -2.91 -0.02 2.36 16 38 H 0.13 3.39 6.30 -2.91 -0.02 3.37 16 39 H 0.07 2.21 7.66 -2.38 -0.02 2.19 16 40 H 0.05 1.92 7.66 -2.39 -0.02 1.91 16 41 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 43 H 0.04 1.62 8.07 -2.39 -0.02 1.60 16 44 H 0.07 3.43 5.59 -2.39 -0.01 3.41 16 45 H 0.25 13.97 8.32 -92.70 -0.77 13.20 16 46 H 0.11 4.06 8.14 -2.39 -0.02 4.04 16 47 H 0.07 3.19 6.46 -2.39 -0.02 3.18 16 48 H 0.11 3.44 8.14 -2.39 -0.02 3.42 16 49 H 0.10 3.40 8.14 -2.38 -0.02 3.38 16 50 H 0.05 2.61 8.14 -2.39 -0.02 2.59 16 51 H 0.12 3.25 7.10 -2.91 -0.02 3.23 16 Total: -1.00 -62.69 401.37 5.93 -56.77 By element: Atomic # 1 Polarization: 26.27 SS G_CDS: 0.88 Total: 27.15 kcal Atomic # 6 Polarization: -41.43 SS G_CDS: 5.57 Total: -35.86 kcal Atomic # 7 Polarization: -80.45 SS G_CDS: -1.61 Total: -82.06 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: -0.94 Total: -12.66 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -62.69 5.93 -56.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000511594972.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.364 kcal (2) G-P(sol) polarization free energy of solvation -62.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds