Wall clock time and date at job start Tue Mar 31 2020 11:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35903 * 117.00157 * 2 1 4 4 C 1.38726 * 120.05472 * 269.72946 * 3 2 1 5 5 C 1.50702 * 120.03104 * 0.28738 * 4 3 2 6 6 C 1.38146 * 119.94298 * 180.25142 * 4 3 2 7 7 C 1.38262 * 120.05828 * 0.04128 * 6 4 3 8 8 C 1.50696 * 119.94547 * 179.97438 * 7 6 4 9 9 N 1.46894 * 109.47253 * 269.97572 * 8 7 6 10 10 C 1.46852 * 111.00014 * 294.20989 * 9 8 7 11 11 C 1.53035 * 109.52516 * 174.15834 * 10 9 8 12 12 C 1.53114 * 109.27596 * 59.18032 * 11 10 9 13 13 C 1.53003 * 109.57659 * 182.40727 * 12 11 10 14 14 C 1.50703 * 109.47247 * 294.71949 * 13 12 11 15 15 H 1.08004 * 119.99852 * 359.97438 * 14 13 12 16 16 C 1.37871 * 119.99930 * 179.97438 * 14 13 12 17 17 N 1.31513 * 120.00586 * 359.97438 * 16 14 13 18 18 Si 1.86813 * 119.99803 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47031 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.46902 * 120.00012 * 18 16 14 21 21 H 1.48502 * 109.46959 * 239.99945 * 18 16 14 22 22 C 1.53115 * 109.16610 * 302.34491 * 12 11 10 23 23 C 1.46848 * 111.00271 * 170.00334 * 9 8 7 24 24 C 1.38270 * 120.11070 * 359.95145 * 7 6 4 25 25 C 1.38143 * 120.05378 * 0.02932 * 24 7 6 26 26 C 1.50705 * 120.02871 * 179.97438 * 25 24 7 27 27 H 1.09000 * 109.47670 * 299.99857 * 1 2 3 28 28 H 1.09003 * 109.47462 * 60.00398 * 1 2 3 29 29 H 1.09006 * 109.46884 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47202 * 90.00079 * 5 4 3 31 31 H 1.08998 * 109.47574 * 210.00632 * 5 4 3 32 32 H 1.09007 * 109.46967 * 330.00720 * 5 4 3 33 33 H 1.08004 * 119.96754 * 180.02562 * 6 4 3 34 34 H 1.08997 * 109.47231 * 29.98032 * 8 7 6 35 35 H 1.09006 * 109.47281 * 149.97677 * 8 7 6 36 36 H 1.09001 * 109.46256 * 294.17606 * 10 9 8 37 37 H 1.09008 * 109.46103 * 54.13988 * 10 9 8 38 38 H 1.08993 * 109.50558 * 299.24078 * 11 10 9 39 39 H 1.09006 * 109.53684 * 179.13994 * 11 10 9 40 40 H 1.09007 * 109.52757 * 62.25317 * 12 11 10 41 41 H 1.09006 * 109.46650 * 54.71413 * 13 12 11 42 42 H 1.09001 * 109.47595 * 174.71702 * 13 12 11 43 43 H 0.96994 * 120.00251 * 179.97438 * 17 16 14 44 44 H 1.09003 * 109.50023 * 297.71840 * 22 12 11 45 45 H 1.09000 * 109.54145 * 177.61401 * 22 12 11 46 46 H 1.09000 * 109.45756 * 305.84902 * 23 9 8 47 47 H 1.08998 * 109.46206 * 65.83396 * 23 9 8 48 48 H 1.07993 * 119.97145 * 180.02562 * 24 7 6 49 49 H 1.08993 * 109.46778 * 270.02077 * 26 25 24 50 50 H 1.08998 * 109.46911 * 30.02254 * 26 25 24 51 51 H 1.09005 * 109.46956 * 150.01907 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 2.3665 1.8274 -1.2007 5 6 2.0249 1.1579 -2.5070 6 6 2.9983 3.0558 -1.1980 7 6 3.3121 3.6706 0.0000 8 6 4.0019 5.0104 0.0000 9 7 5.4573 4.8118 0.0034 10 6 5.9001 4.1850 1.2555 11 6 7.3931 3.8613 1.1654 12 6 8.1761 5.1530 0.9147 13 6 9.6639 4.8295 0.7637 14 6 10.1968 4.2955 2.0684 15 1 9.5401 4.1972 2.9202 16 6 11.5227 3.9326 2.1745 17 7 12.3223 4.0518 1.1372 18 14 12.1834 3.2714 3.7919 19 1 11.0899 3.2363 4.7960 20 1 12.7119 1.8989 3.5866 21 1 13.2739 4.1540 4.2790 22 6 7.6627 5.8110 -0.3690 23 6 6.1619 6.0781 -0.2345 24 6 2.9936 3.0583 1.1982 25 6 2.3614 1.8300 1.2008 26 6 2.0150 1.1629 2.5070 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.0290 1.4671 -2.8242 31 1 2.7535 1.4464 -3.2646 32 1 2.0452 0.0758 -2.3769 33 1 3.2477 3.5363 -2.1326 34 1 3.7133 5.5676 -0.8911 35 1 3.7094 5.5697 0.8888 36 1 5.7263 4.8697 2.0856 37 1 5.3383 3.2654 1.4197 38 1 7.5658 3.1659 0.3441 39 1 7.7253 3.4100 2.1004 40 1 8.0348 5.8336 1.7545 41 1 9.7952 4.0797 -0.0165 42 1 10.2070 5.7349 0.4927 43 1 13.2551 3.7969 1.2120 44 1 7.8396 5.1461 -1.2145 45 1 8.1869 6.7529 -0.5307 46 1 5.7903 6.5334 -1.1525 47 1 5.9870 6.7538 0.6028 48 1 3.2393 3.5406 2.1326 49 1 2.8453 0.5321 2.8241 50 1 1.8265 1.9235 3.2646 51 1 1.1226 0.5507 2.3769 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000514863912.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:47 Heat of formation + Delta-G solvation = -37.892171 kcal Electronic energy + Delta-G solvation = -26903.674585 eV Core-core repulsion = 23380.944832 eV Total energy + Delta-G solvation = -3522.729753 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.49719 -38.85769 -37.39792 -34.64012 -33.74084 -32.59746 -31.28850 -30.29086 -28.34724 -28.14566 -26.84671 -26.50349 -25.02773 -23.27027 -22.57105 -21.10538 -20.79318 -20.25751 -18.86549 -17.79391 -16.76928 -16.23122 -15.90298 -15.59753 -15.12350 -14.63832 -14.44638 -14.16440 -14.10467 -13.70122 -13.60985 -13.44665 -13.30552 -13.08444 -13.02391 -12.72686 -12.56994 -12.21173 -12.18223 -11.94452 -11.84999 -11.64396 -11.45734 -11.30846 -11.13793 -10.97469 -10.74713 -10.59081 -10.55718 -10.22238 -10.09321 -9.89358 -9.48740 -9.01379 -8.83161 -8.65141 -8.51689 -8.29095 -8.03203 -5.93990 -3.95158 1.06256 1.25102 3.25468 3.33967 3.41538 3.45216 3.74440 4.28822 4.50510 4.62150 4.62609 4.70001 4.95855 4.99747 5.12747 5.18012 5.22846 5.26605 5.32699 5.37651 5.41014 5.41498 5.45860 5.48886 5.49883 5.58787 5.61374 5.63827 5.74470 5.79586 5.91692 5.92767 6.03121 6.11193 6.18134 6.28683 6.29543 6.40395 6.48032 6.54857 6.63693 6.65907 6.72158 7.03195 7.15567 7.25001 7.35415 7.39168 7.42995 7.74817 7.91785 8.07214 8.50494 9.11666 9.68208 11.17453 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.015631 B = 0.002831 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.831285 B = 9888.585055 C =10727.364444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.332 6.332 3 C 0.085 3.915 4 C -0.100 4.100 5 C -0.111 4.111 6 C -0.092 4.092 7 C -0.066 4.066 8 C 0.093 3.907 9 N -0.530 5.530 10 C 0.052 3.948 11 C -0.099 4.099 12 C -0.081 4.081 13 C 0.028 3.972 14 C -0.512 4.512 15 H 0.055 0.945 16 C 0.055 3.945 17 N -0.896 5.896 18 Si 0.887 3.113 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.285 1.285 22 C -0.111 4.111 23 C 0.060 3.940 24 C -0.107 4.107 25 C -0.099 4.099 26 C -0.109 4.109 27 H 0.044 0.956 28 H 0.044 0.956 29 H 0.091 0.909 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.126 0.874 34 H 0.080 0.920 35 H 0.039 0.961 36 H 0.025 0.975 37 H 0.070 0.930 38 H 0.062 0.938 39 H 0.071 0.929 40 H 0.050 0.950 41 H 0.016 0.984 42 H 0.014 0.986 43 H 0.258 0.742 44 H 0.065 0.935 45 H 0.060 0.940 46 H 0.065 0.935 47 H 0.028 0.972 48 H 0.123 0.877 49 H 0.074 0.926 50 H 0.064 0.936 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.360 -2.654 -3.892 26.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.249 6.249 3 C 0.041 3.959 4 C -0.101 4.101 5 C -0.167 4.167 6 C -0.111 4.111 7 C -0.066 4.066 8 C -0.035 4.035 9 N -0.255 5.255 10 C -0.075 4.075 11 C -0.136 4.136 12 C -0.100 4.100 13 C -0.009 4.009 14 C -0.551 4.551 15 H 0.073 0.927 16 C -0.145 4.145 17 N -0.536 5.536 18 Si 0.716 3.284 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.211 1.211 22 C -0.149 4.149 23 C -0.067 4.067 24 C -0.125 4.125 25 C -0.100 4.100 26 C -0.166 4.166 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.110 0.890 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.144 0.856 34 H 0.098 0.902 35 H 0.057 0.943 36 H 0.044 0.956 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.090 0.910 40 H 0.069 0.931 41 H 0.035 0.965 42 H 0.032 0.968 43 H 0.068 0.932 44 H 0.084 0.916 45 H 0.079 0.921 46 H 0.084 0.916 47 H 0.046 0.954 48 H 0.141 0.859 49 H 0.092 0.908 50 H 0.083 0.917 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -25.977 -3.162 -4.325 26.524 hybrid contribution 0.217 0.347 1.557 1.609 sum -25.760 -2.815 -2.769 26.061 Atomic orbital electron populations 1.22953 0.79605 1.02910 1.00511 1.86020 1.19371 1.25207 1.94334 1.18287 0.99393 0.86625 0.91575 1.20137 1.00154 0.94853 0.94929 1.20685 1.01385 1.01007 0.93651 1.20771 0.98228 0.94126 0.97958 1.19758 0.97320 0.96683 0.92866 1.21010 0.88476 0.92802 1.01207 1.61965 1.02507 1.24897 1.36112 1.22299 0.98206 0.98232 0.88762 1.21529 0.91011 0.98579 1.02516 1.21232 0.98478 0.95280 0.94981 1.19121 0.88258 0.96583 0.96966 1.21294 0.94428 1.41920 0.97414 0.92694 1.25019 0.97231 0.96051 0.96234 1.69973 1.05320 1.48826 1.29497 0.86609 0.78948 0.78639 0.84246 1.19801 1.21075 1.21143 1.21688 0.92544 1.00682 1.00009 1.22116 0.95790 0.89366 0.99478 1.20836 0.99078 0.94718 0.97896 1.20104 1.00089 0.94778 0.94981 1.20689 1.02088 1.00307 0.93491 0.93709 0.93714 0.89028 0.91696 0.91255 0.90993 0.85566 0.90183 0.94309 0.95647 0.91154 0.91924 0.91006 0.93131 0.96517 0.96798 0.93180 0.91595 0.92136 0.91633 0.95406 0.85886 0.90768 0.91668 0.91698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.76 101.05 1.09 1.34 16 2 O -0.33 -3.71 8.68 -19.43 -0.17 -3.88 16 3 C 0.08 1.02 5.67 -39.22 -0.22 0.80 16 4 C -0.10 -1.16 5.89 -104.47 -0.62 -1.77 16 5 C -0.11 -1.02 9.79 36.01 0.35 -0.66 16 6 C -0.09 -1.08 9.35 -39.61 -0.37 -1.45 16 7 C -0.07 -0.80 4.89 -104.60 -0.51 -1.31 16 8 C 0.09 1.11 5.12 -4.98 -0.03 1.08 16 9 N -0.53 -7.81 4.65 -236.11 -1.10 -8.91 16 10 C 0.05 0.84 5.15 -3.83 -0.02 0.82 16 11 C -0.10 -1.92 5.15 -26.65 -0.14 -2.06 16 12 C -0.08 -1.68 2.20 -90.50 -0.20 -1.88 16 13 C 0.03 0.72 4.45 -27.88 -0.12 0.60 16 14 C -0.51 -14.48 8.45 -34.44 -0.29 -14.77 16 15 H 0.05 1.52 7.08 -52.48 -0.37 1.14 16 16 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 17 N -0.90 -27.31 13.29 55.43 0.74 -26.57 16 18 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 19 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 C -0.11 -1.96 5.38 -26.65 -0.14 -2.10 16 23 C 0.06 0.88 5.46 -3.83 -0.02 0.86 16 24 C -0.11 -1.27 7.52 -39.60 -0.30 -1.56 16 25 C -0.10 -1.16 5.89 -104.47 -0.62 -1.78 16 26 C -0.11 -1.05 9.79 36.01 0.35 -0.69 16 27 H 0.04 0.30 7.24 -51.93 -0.38 -0.07 16 28 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 32 H 0.07 0.68 7.53 -51.92 -0.39 0.29 16 33 H 0.13 1.32 8.06 -52.48 -0.42 0.90 16 34 H 0.08 0.85 7.93 -51.93 -0.41 0.43 16 35 H 0.04 0.44 8.07 -51.93 -0.42 0.03 16 36 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 1.09 5.75 -51.92 -0.30 0.79 16 38 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.07 1.49 7.06 -51.93 -0.37 1.12 16 40 H 0.05 1.07 8.14 -51.92 -0.42 0.65 16 41 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 44 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 45 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 46 H 0.07 0.83 8.02 -51.93 -0.42 0.42 16 47 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.12 1.35 7.95 -52.49 -0.42 0.93 16 49 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 50 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 51 H 0.06 0.56 6.31 -51.93 -0.33 0.24 16 LS Contribution 397.02 15.07 5.98 5.98 Total: -1.00 -31.34 397.02 -10.73 -42.07 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -9.27 Total: -2.56 kcal Atomic # 6 Polarization: -21.15 SS G_CDS: -1.90 Total: -23.05 kcal Atomic # 7 Polarization: -35.12 SS G_CDS: -0.36 Total: -35.48 kcal Atomic # 8 Polarization: -3.71 SS G_CDS: -0.17 Total: -3.88 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -31.34 -10.73 -42.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000514863912.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.182 kcal (2) G-P(sol) polarization free energy of solvation -31.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds