Wall clock time and date at job start Tue Mar 31 2020 11:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35903 * 117.00157 * 2 1 4 4 C 1.38726 * 120.05472 * 269.72946 * 3 2 1 5 5 C 1.50702 * 120.03104 * 0.28738 * 4 3 2 6 6 C 1.38146 * 119.94298 * 180.25142 * 4 3 2 7 7 C 1.38262 * 120.05828 * 0.04128 * 6 4 3 8 8 C 1.50696 * 119.94547 * 179.97438 * 7 6 4 9 9 N 1.46894 * 109.47253 * 269.97572 * 8 7 6 10 10 C 1.46852 * 111.00014 * 294.20989 * 9 8 7 11 11 C 1.53035 * 109.52516 * 174.15834 * 10 9 8 12 12 C 1.53114 * 109.27596 * 59.18032 * 11 10 9 13 13 C 1.53003 * 109.57659 * 182.40727 * 12 11 10 14 14 C 1.50703 * 109.47247 * 294.71949 * 13 12 11 15 15 H 1.08004 * 119.99852 * 359.97438 * 14 13 12 16 16 C 1.37871 * 119.99930 * 179.97438 * 14 13 12 17 17 N 1.31513 * 120.00586 * 359.97438 * 16 14 13 18 18 Si 1.86813 * 119.99803 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47031 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.46902 * 120.00012 * 18 16 14 21 21 H 1.48502 * 109.46959 * 239.99945 * 18 16 14 22 22 C 1.53115 * 109.16610 * 302.34491 * 12 11 10 23 23 C 1.46848 * 111.00271 * 170.00334 * 9 8 7 24 24 C 1.38270 * 120.11070 * 359.95145 * 7 6 4 25 25 C 1.38143 * 120.05378 * 0.02932 * 24 7 6 26 26 C 1.50705 * 120.02871 * 179.97438 * 25 24 7 27 27 H 1.09000 * 109.47670 * 299.99857 * 1 2 3 28 28 H 1.09003 * 109.47462 * 60.00398 * 1 2 3 29 29 H 1.09006 * 109.46884 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47202 * 90.00079 * 5 4 3 31 31 H 1.08998 * 109.47574 * 210.00632 * 5 4 3 32 32 H 1.09007 * 109.46967 * 330.00720 * 5 4 3 33 33 H 1.08004 * 119.96754 * 180.02562 * 6 4 3 34 34 H 1.08997 * 109.47231 * 29.98032 * 8 7 6 35 35 H 1.09006 * 109.47281 * 149.97677 * 8 7 6 36 36 H 1.09001 * 109.46256 * 294.17606 * 10 9 8 37 37 H 1.09008 * 109.46103 * 54.13988 * 10 9 8 38 38 H 1.08993 * 109.50558 * 299.24078 * 11 10 9 39 39 H 1.09006 * 109.53684 * 179.13994 * 11 10 9 40 40 H 1.09007 * 109.52757 * 62.25317 * 12 11 10 41 41 H 1.09006 * 109.46650 * 54.71413 * 13 12 11 42 42 H 1.09001 * 109.47595 * 174.71702 * 13 12 11 43 43 H 0.96994 * 120.00251 * 179.97438 * 17 16 14 44 44 H 1.09003 * 109.50023 * 297.71840 * 22 12 11 45 45 H 1.09000 * 109.54145 * 177.61401 * 22 12 11 46 46 H 1.09000 * 109.45756 * 305.84902 * 23 9 8 47 47 H 1.08998 * 109.46206 * 65.83396 * 23 9 8 48 48 H 1.07993 * 119.97145 * 180.02562 * 24 7 6 49 49 H 1.08993 * 109.46778 * 270.02077 * 26 25 24 50 50 H 1.08998 * 109.46911 * 30.02254 * 26 25 24 51 51 H 1.09005 * 109.46956 * 150.01907 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 2.3665 1.8274 -1.2007 5 6 2.0249 1.1579 -2.5070 6 6 2.9983 3.0558 -1.1980 7 6 3.3121 3.6706 0.0000 8 6 4.0019 5.0104 0.0000 9 7 5.4573 4.8118 0.0034 10 6 5.9001 4.1850 1.2555 11 6 7.3931 3.8613 1.1654 12 6 8.1761 5.1530 0.9147 13 6 9.6639 4.8295 0.7637 14 6 10.1968 4.2955 2.0684 15 1 9.5401 4.1972 2.9202 16 6 11.5227 3.9326 2.1745 17 7 12.3223 4.0518 1.1372 18 14 12.1834 3.2714 3.7919 19 1 11.0899 3.2363 4.7960 20 1 12.7119 1.8989 3.5866 21 1 13.2739 4.1540 4.2790 22 6 7.6627 5.8110 -0.3690 23 6 6.1619 6.0781 -0.2345 24 6 2.9936 3.0583 1.1982 25 6 2.3614 1.8300 1.2008 26 6 2.0150 1.1629 2.5070 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.0290 1.4671 -2.8242 31 1 2.7535 1.4464 -3.2646 32 1 2.0452 0.0758 -2.3769 33 1 3.2477 3.5363 -2.1326 34 1 3.7133 5.5676 -0.8911 35 1 3.7094 5.5697 0.8888 36 1 5.7263 4.8697 2.0856 37 1 5.3383 3.2654 1.4197 38 1 7.5658 3.1659 0.3441 39 1 7.7253 3.4100 2.1004 40 1 8.0348 5.8336 1.7545 41 1 9.7952 4.0797 -0.0165 42 1 10.2070 5.7349 0.4927 43 1 13.2551 3.7969 1.2120 44 1 7.8396 5.1461 -1.2145 45 1 8.1869 6.7529 -0.5307 46 1 5.7903 6.5334 -1.1525 47 1 5.9870 6.7538 0.6028 48 1 3.2393 3.5406 2.1326 49 1 2.8453 0.5321 2.8241 50 1 1.8265 1.9235 3.2646 51 1 1.1226 0.5507 2.3769 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000514863912.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:46 Heat of formation + Delta-G solvation = -54.324050 kcal Electronic energy + Delta-G solvation = -26904.387125 eV Core-core repulsion = 23380.944832 eV Total energy + Delta-G solvation = -3523.442293 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.33806 -40.07005 -38.34350 -36.17598 -34.53230 -34.43121 -32.52549 -31.64327 -29.82760 -28.94231 -27.65917 -27.57003 -26.27177 -24.86053 -23.93332 -22.34951 -21.87846 -21.26165 -20.42195 -18.58296 -18.43153 -17.58576 -16.97714 -16.56001 -16.43022 -16.14100 -15.66396 -15.18564 -14.97638 -14.88974 -14.79173 -14.53514 -14.46381 -14.11156 -14.01824 -13.93014 -13.78227 -13.39531 -13.32498 -13.11961 -13.01293 -12.78844 -12.73003 -12.63177 -12.40299 -12.27730 -12.25444 -12.05463 -11.95262 -11.84331 -11.61524 -11.25431 -10.87990 -10.82712 -10.69341 -10.52573 -9.50326 -9.40917 -9.12654 -8.17538 -6.27001 0.21211 0.39950 1.38446 1.38958 1.51828 2.41298 2.43211 2.92752 3.15253 3.21988 3.77666 3.82718 3.86036 4.05218 4.07264 4.12591 4.30977 4.34768 4.38855 4.43019 4.46629 4.51950 4.53460 4.60473 4.67238 4.68507 4.72360 4.74754 4.75169 4.77435 4.80007 4.86190 4.86305 4.96241 4.97356 5.10766 5.16718 5.19151 5.34402 5.38869 5.42118 5.44772 5.46938 5.57126 5.58307 5.67784 5.81411 5.84832 5.89842 6.18499 6.23859 6.31095 6.61375 6.89380 7.41314 8.94668 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.015631 B = 0.002831 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.831285 B = 9888.585055 C =10727.364444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.349 6.349 3 C 0.074 3.926 4 C -0.113 4.113 5 C -0.107 4.107 6 C -0.100 4.100 7 C -0.077 4.077 8 C 0.097 3.903 9 N -0.542 5.542 10 C 0.066 3.934 11 C -0.093 4.093 12 C -0.074 4.074 13 C 0.034 3.966 14 C -0.527 4.527 15 H 0.059 0.941 16 C -0.003 4.003 17 N -0.936 5.936 18 Si 0.960 3.040 19 H -0.261 1.261 20 H -0.280 1.280 21 H -0.278 1.278 22 C -0.107 4.107 23 C 0.068 3.932 24 C -0.115 4.115 25 C -0.112 4.112 26 C -0.107 4.107 27 H 0.050 0.950 28 H 0.051 0.949 29 H 0.111 0.889 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.137 0.863 34 H 0.099 0.901 35 H 0.049 0.951 36 H 0.033 0.967 37 H 0.076 0.924 38 H 0.042 0.958 39 H 0.053 0.947 40 H 0.049 0.951 41 H -0.015 1.015 42 H -0.013 1.013 43 H 0.262 0.738 44 H 0.052 0.948 45 H 0.064 0.936 46 H 0.093 0.907 47 H 0.036 0.964 48 H 0.130 0.870 49 H 0.068 0.932 50 H 0.078 0.922 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.512 -2.455 -3.206 28.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.266 6.266 3 C 0.031 3.969 4 C -0.113 4.113 5 C -0.164 4.164 6 C -0.118 4.118 7 C -0.078 4.078 8 C -0.030 4.030 9 N -0.267 5.267 10 C -0.062 4.062 11 C -0.131 4.131 12 C -0.092 4.092 13 C -0.004 4.004 14 C -0.566 4.566 15 H 0.077 0.923 16 C -0.200 4.200 17 N -0.577 5.577 18 Si 0.785 3.215 19 H -0.185 1.185 20 H -0.206 1.206 21 H -0.204 1.204 22 C -0.145 4.145 23 C -0.060 4.060 24 C -0.133 4.133 25 C -0.113 4.113 26 C -0.164 4.164 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.129 0.871 30 H 0.100 0.900 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.155 0.845 34 H 0.117 0.883 35 H 0.067 0.933 36 H 0.052 0.948 37 H 0.094 0.906 38 H 0.061 0.939 39 H 0.071 0.929 40 H 0.067 0.933 41 H 0.004 0.996 42 H 0.005 0.995 43 H 0.070 0.930 44 H 0.071 0.929 45 H 0.082 0.918 46 H 0.112 0.888 47 H 0.055 0.945 48 H 0.148 0.852 49 H 0.086 0.914 50 H 0.096 0.904 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -28.157 -2.959 -3.639 28.545 hybrid contribution 0.863 0.237 1.287 1.568 sum -27.294 -2.722 -2.352 27.530 Atomic orbital electron populations 1.23165 0.77725 1.04426 1.01122 1.85979 1.21251 1.24976 1.94441 1.18506 0.99603 0.86870 0.91943 1.20427 1.00052 0.95054 0.95773 1.20692 1.02477 1.00425 0.92766 1.20960 0.98191 0.94328 0.98364 1.19851 0.97820 0.96979 0.93118 1.21046 0.86190 0.93100 1.02622 1.61893 1.04466 1.25114 1.35205 1.22063 0.95215 0.98974 0.89904 1.21394 0.93795 0.97243 1.00654 1.21079 0.95107 0.96236 0.96801 1.19013 0.91869 0.94216 0.95255 1.21676 0.94876 1.41764 0.98238 0.92256 1.25962 0.97648 0.96329 1.00101 1.70109 1.05763 1.49913 1.31898 0.85474 0.78460 0.77924 0.79674 1.18529 1.20584 1.20416 1.21600 0.95316 1.00117 0.97461 1.22043 0.93153 0.89522 1.01251 1.20983 0.99210 0.94926 0.98219 1.20368 1.00151 0.94997 0.95780 1.20705 1.02108 1.00588 0.92977 0.93152 0.93039 0.87121 0.90021 0.90767 0.91557 0.84542 0.88290 0.93272 0.94849 0.90591 0.93885 0.92856 0.93260 0.99636 0.99452 0.92954 0.92884 0.91767 0.88841 0.94534 0.85218 0.91366 0.90356 0.90987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.76 113.37 1.22 1.61 16 2 O -0.35 -7.42 8.68 -92.45 -0.80 -8.22 16 3 C 0.07 1.71 5.67 22.51 0.13 1.84 16 4 C -0.11 -2.46 5.89 -19.77 -0.12 -2.58 16 5 C -0.11 -1.82 9.79 71.24 0.70 -1.12 16 6 C -0.10 -2.18 9.35 22.25 0.21 -1.97 16 7 C -0.08 -1.73 4.89 -19.85 -0.10 -1.83 16 8 C 0.10 2.05 5.12 85.56 0.44 2.49 16 9 N -0.54 -14.85 4.65 -900.92 -4.19 -19.03 16 10 C 0.07 2.03 5.15 86.32 0.44 2.48 16 11 C -0.09 -3.67 5.15 30.64 0.16 -3.51 16 12 C -0.07 -3.10 2.20 -10.72 -0.02 -3.13 16 13 C 0.03 1.82 4.45 29.85 0.13 1.95 16 14 C -0.53 -30.53 8.45 25.60 0.22 -30.31 16 15 H 0.06 3.31 7.08 -2.91 -0.02 3.29 16 16 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 17 N -0.94 -58.48 13.29 21.44 0.28 -58.19 16 18 Si 0.96 45.36 29.54 68.60 2.03 47.38 16 19 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 20 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 21 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 22 C -0.11 -3.72 5.38 30.65 0.16 -3.56 16 23 C 0.07 1.81 5.46 86.33 0.47 2.28 16 24 C -0.11 -2.56 7.52 22.25 0.17 -2.39 16 25 C -0.11 -2.51 5.89 -19.77 -0.12 -2.63 16 26 C -0.11 -1.93 9.79 71.24 0.70 -1.23 16 27 H 0.05 0.60 7.24 -2.39 -0.02 0.58 16 28 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.11 0.99 8.14 -2.38 -0.02 0.98 16 30 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.07 1.16 8.09 -2.39 -0.02 1.15 16 32 H 0.07 1.19 7.53 -2.38 -0.02 1.17 16 33 H 0.14 2.59 8.06 -2.91 -0.02 2.57 16 34 H 0.10 1.73 7.93 -2.39 -0.02 1.71 16 35 H 0.05 0.96 8.07 -2.38 -0.02 0.94 16 36 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.08 2.27 5.75 -2.38 -0.01 2.26 16 38 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.05 2.25 7.06 -2.38 -0.02 2.24 16 40 H 0.05 2.08 8.14 -2.38 -0.02 2.06 16 41 H -0.01 -0.88 8.14 -2.38 -0.02 -0.90 16 42 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 43 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 44 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 45 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 46 H 0.09 2.04 8.02 -2.39 -0.02 2.02 16 47 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 48 H 0.13 2.61 7.95 -2.91 -0.02 2.59 16 49 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 50 H 0.08 1.16 8.09 -2.39 -0.02 1.14 16 51 H 0.07 1.16 6.31 -2.38 -0.02 1.14 16 Total: -1.00 -68.81 397.02 3.45 -65.36 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: 0.87 Total: 14.05 kcal Atomic # 6 Polarization: -46.59 SS G_CDS: 5.25 Total: -41.34 kcal Atomic # 7 Polarization: -73.32 SS G_CDS: -3.90 Total: -77.23 kcal Atomic # 8 Polarization: -7.42 SS G_CDS: -0.80 Total: -8.22 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.38 kcal Total: -68.81 3.45 -65.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000514863912.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.035 kcal (2) G-P(sol) polarization free energy of solvation -68.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds