Wall clock time and date at job start Tue Mar 31 2020 11:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38254 * 119.99858 * 2 1 4 4 C 1.38211 * 120.00257 * 180.02562 * 3 2 1 5 5 C 1.38257 * 119.99643 * 0.02562 * 4 3 2 6 6 C 1.50700 * 120.00072 * 179.97438 * 5 4 3 7 7 C 1.50702 * 109.46869 * 89.99977 * 6 5 4 8 8 O 1.21283 * 120.00262 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99928 * 179.72354 * 7 6 5 10 10 C 1.46499 * 120.00199 * 180.27479 * 9 7 6 11 11 C 1.50697 * 109.46949 * 90.00203 * 10 9 7 12 12 H 1.08004 * 120.00186 * 0.02562 * 11 10 9 13 13 C 1.37881 * 120.00081 * 180.02562 * 11 10 9 14 14 N 1.31519 * 120.00096 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 120.00103 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.46927 * 59.99717 * 15 13 11 17 17 H 1.48496 * 109.47287 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47040 * 299.99940 * 15 13 11 19 19 C 1.46506 * 120.00264 * 0.28128 * 9 7 6 20 20 C 1.52998 * 109.47320 * 89.99349 * 19 9 7 21 21 C 1.52996 * 109.47099 * 180.02562 * 20 19 9 22 22 C 1.52998 * 109.47019 * 175.00221 * 21 20 19 23 23 C 1.52994 * 109.47326 * 295.00098 * 21 20 19 24 24 C 1.38213 * 120.00106 * 0.25731 * 5 4 3 25 25 C 1.38211 * 120.00094 * 180.02562 * 2 1 3 26 26 C 1.50705 * 119.99840 * 359.97438 * 25 2 1 27 27 H 1.08997 * 109.47318 * 90.00261 * 1 2 3 28 28 H 1.09007 * 109.47194 * 209.99866 * 1 2 3 29 29 H 1.08997 * 109.47490 * 329.99561 * 1 2 3 30 30 H 1.08002 * 120.00131 * 0.02562 * 3 2 1 31 31 H 1.08002 * 120.00461 * 179.97438 * 4 3 2 32 32 H 1.09004 * 109.47210 * 330.00271 * 6 5 4 33 33 H 1.08994 * 109.47551 * 209.99923 * 6 5 4 34 34 H 1.09001 * 109.47567 * 210.00057 * 10 9 7 35 35 H 1.09005 * 109.47076 * 330.00563 * 10 9 7 36 36 H 0.96991 * 119.99957 * 180.02562 * 14 13 11 37 37 H 1.08994 * 109.46996 * 209.99677 * 19 9 7 38 38 H 1.09001 * 109.46578 * 329.99540 * 19 9 7 39 39 H 1.08997 * 109.47106 * 300.00561 * 20 19 9 40 40 H 1.09004 * 109.46895 * 60.00075 * 20 19 9 41 41 H 1.09002 * 109.46968 * 55.00650 * 21 20 19 42 42 H 1.09000 * 109.47516 * 59.99967 * 22 21 20 43 43 H 1.09002 * 109.47121 * 180.02562 * 22 21 20 44 44 H 1.09001 * 109.47093 * 300.00072 * 22 21 20 45 45 H 1.09002 * 109.47269 * 179.97438 * 23 21 20 46 46 H 1.08994 * 109.47221 * 300.00165 * 23 21 20 47 47 H 1.09007 * 109.46892 * 60.00092 * 23 21 20 48 48 H 1.08000 * 119.99831 * 179.72704 * 24 5 4 49 49 H 1.08998 * 109.46702 * 90.00471 * 26 25 2 50 50 H 1.09000 * 109.46903 * 210.00299 * 26 25 2 51 51 H 1.08992 * 109.47231 * 329.99903 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5803 1.1974 -0.0005 5 6 4.2716 0.0001 -0.0016 6 6 5.7786 0.0001 -0.0028 7 6 6.2820 -0.0005 1.4177 8 8 5.4946 -0.0014 2.3402 9 7 7.6073 -0.0063 1.6630 10 6 8.0966 -0.0130 3.0438 11 6 8.2592 -1.4361 3.5122 12 1 8.0222 -2.2538 2.8476 13 6 8.7107 -1.6943 4.7891 14 7 8.9989 -0.6986 5.5986 15 14 8.9129 -3.4583 5.3695 16 1 9.8886 -4.1580 4.4957 17 1 9.4088 -3.4652 6.7692 18 1 7.6026 -4.1540 5.3047 19 6 8.5585 -0.0057 0.5488 20 6 8.8949 1.4370 0.1660 21 6 9.8878 1.4375 -0.9980 22 6 10.1285 2.8753 -1.4622 23 6 11.2111 0.8213 -0.5398 24 6 3.5806 -1.1969 -0.0075 25 6 2.1981 -1.1969 -0.0005 26 6 1.4445 -2.5021 -0.0005 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3634 0.8899 0.5139 30 1 1.6582 2.1327 0.0004 31 1 4.1204 2.1327 -0.0010 32 1 6.1416 0.8903 -0.5165 33 1 6.1416 -0.8896 -0.5172 34 1 9.0588 0.4971 3.0909 35 1 7.3810 0.5011 3.6854 36 1 9.3167 -0.8803 6.4968 37 1 9.4694 -0.5239 0.8485 38 1 8.1157 -0.5149 -0.3072 39 1 7.9840 1.9551 -0.1336 40 1 9.3377 1.9461 1.0221 41 1 9.4809 0.8527 -1.8229 42 1 10.5353 3.4603 -0.6374 43 1 10.8355 2.8757 -2.2918 44 1 9.1857 3.3144 -1.7886 45 1 11.9183 0.8213 -1.3692 46 1 11.6179 1.4062 0.2850 47 1 11.0396 -0.2031 -0.2090 48 1 4.1207 -2.1321 -0.0128 49 1 1.2626 -2.8165 -1.0282 50 1 2.0338 -3.2618 0.5130 51 1 0.4924 -2.3719 0.5137 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000517769974.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:13 Heat of formation + Delta-G solvation = -45.405498 kcal Electronic energy + Delta-G solvation = -26887.211482 eV Core-core repulsion = 23364.155926 eV Total energy + Delta-G solvation = -3523.055556 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.81117 -38.72413 -36.74768 -34.52533 -33.91440 -32.59102 -32.09339 -29.79019 -28.94559 -27.33445 -27.07043 -26.74432 -25.02308 -23.23827 -22.57691 -21.92025 -20.05417 -19.84576 -18.23028 -16.47940 -16.29325 -15.90471 -15.82530 -15.31459 -14.97060 -14.58360 -14.29333 -14.22137 -14.05937 -13.78538 -13.55839 -12.99349 -12.80540 -12.74382 -12.65660 -12.56154 -12.42171 -12.26203 -12.12698 -11.88437 -11.75474 -11.46328 -11.42300 -11.26491 -11.16393 -10.87471 -10.79347 -10.78381 -10.71274 -10.56007 -10.45738 -10.30319 -10.09300 -9.59238 -8.90438 -8.51353 -8.40341 -8.17926 -7.59098 -6.01285 -4.05747 1.52744 1.61602 3.32948 3.37505 3.39762 3.50762 3.78607 4.13218 4.47566 4.85514 4.88695 4.94167 4.97829 5.01325 5.03852 5.13872 5.20198 5.30419 5.35076 5.42688 5.48061 5.49935 5.57027 5.65077 5.65967 5.69487 5.73034 5.75985 5.79510 5.82617 5.83621 5.88165 5.93258 5.95814 6.03806 6.18128 6.20100 6.28811 6.31257 6.34875 6.51738 6.57361 6.62642 6.78889 6.85464 7.10900 7.24022 7.49075 7.60324 7.95521 8.27522 8.48576 8.94033 9.17133 9.59221 11.06714 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.008203 B = 0.004306 C = 0.003075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3412.452141 B = 6500.994093 C = 9103.188668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.097 4.097 3 C -0.117 4.117 4 C -0.108 4.108 5 C -0.054 4.054 6 C -0.105 4.105 7 C 0.507 3.493 8 O -0.532 6.532 9 N -0.599 5.599 10 C 0.248 3.752 11 C -0.525 4.525 12 H 0.056 0.944 13 C 0.062 3.938 14 N -0.895 5.895 15 Si 0.896 3.104 16 H -0.277 1.277 17 H -0.286 1.286 18 H -0.277 1.277 19 C 0.111 3.889 20 C -0.134 4.134 21 C -0.093 4.093 22 C -0.146 4.146 23 C -0.151 4.151 24 C -0.101 4.101 25 C -0.087 4.087 26 C -0.115 4.115 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.118 0.882 31 H 0.117 0.883 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.031 0.969 35 H 0.042 0.958 36 H 0.263 0.737 37 H 0.083 0.917 38 H 0.063 0.937 39 H 0.059 0.941 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.054 0.946 43 H 0.051 0.949 44 H 0.051 0.949 45 H 0.049 0.951 46 H 0.056 0.944 47 H 0.061 0.939 48 H 0.118 0.882 49 H 0.066 0.934 50 H 0.065 0.935 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.061 3.506 -17.532 19.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.097 4.097 3 C -0.135 4.135 4 C -0.126 4.126 5 C -0.054 4.054 6 C -0.145 4.145 7 C 0.293 3.707 8 O -0.409 6.409 9 N -0.330 5.330 10 C 0.129 3.871 11 C -0.564 4.564 12 H 0.074 0.926 13 C -0.140 4.140 14 N -0.534 5.534 15 Si 0.724 3.276 16 H -0.203 1.203 17 H -0.212 1.212 18 H -0.202 1.202 19 C -0.014 4.014 20 C -0.172 4.172 21 C -0.112 4.112 22 C -0.203 4.203 23 C -0.208 4.208 24 C -0.119 4.119 25 C -0.087 4.087 26 C -0.172 4.172 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.136 0.864 31 H 0.135 0.865 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.049 0.951 35 H 0.060 0.940 36 H 0.073 0.927 37 H 0.102 0.898 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.073 0.927 43 H 0.070 0.930 44 H 0.071 0.929 45 H 0.068 0.932 46 H 0.075 0.925 47 H 0.080 0.920 48 H 0.136 0.864 49 H 0.085 0.915 50 H 0.084 0.916 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.401 3.540 -16.809 18.704 hybrid contribution 0.407 -0.900 0.465 1.092 sum -6.993 2.641 -16.344 17.973 Atomic orbital electron populations 1.20810 0.91712 1.02630 1.01826 1.19660 0.95629 0.92770 1.01606 1.20880 0.94040 0.97166 1.01417 1.20901 0.94102 0.97349 1.00276 1.19330 0.94056 0.93345 0.98715 1.20792 0.92642 1.04202 0.96865 1.20173 0.82785 0.77703 0.90053 1.90695 1.54833 1.49330 1.46051 1.48235 1.04425 1.71468 1.08886 1.19229 0.94848 0.97302 0.75727 1.21399 1.44134 0.92330 0.98493 0.92614 1.24922 0.95401 0.97301 0.96401 1.69922 1.45123 1.30838 1.07533 0.86593 0.78469 0.84887 0.77679 1.20270 1.21187 1.20222 1.21532 0.94533 0.95834 0.89480 1.22121 0.98746 0.98143 0.98221 1.21056 0.96007 0.96474 0.97686 1.21833 1.01198 0.96432 1.00869 1.21910 0.96488 1.01495 1.00932 1.20836 0.93399 0.97553 1.00150 1.19648 0.93558 0.94740 1.00804 1.20829 1.00070 0.94378 1.01877 0.91588 0.91364 0.91888 0.86442 0.86478 0.88810 0.88770 0.95138 0.94038 0.92724 0.89821 0.91830 0.92276 0.91234 0.91376 0.92691 0.93022 0.92939 0.93218 0.92508 0.92004 0.86359 0.91504 0.91600 0.91363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.12 9.60 36.01 0.35 -0.77 16 2 C -0.10 -1.28 5.88 -104.63 -0.62 -1.90 16 3 C -0.12 -1.59 9.70 -39.59 -0.38 -1.97 16 4 C -0.11 -1.61 9.70 -39.58 -0.38 -2.00 16 5 C -0.05 -0.86 4.37 -104.62 -0.46 -1.32 16 6 C -0.10 -1.62 4.38 -29.03 -0.13 -1.74 16 7 C 0.51 10.67 7.67 -10.98 -0.08 10.59 16 8 O -0.53 -13.84 15.61 5.55 0.09 -13.75 16 9 N -0.60 -12.61 2.46 -175.06 -0.43 -13.04 16 10 C 0.25 6.53 5.16 -5.20 -0.03 6.50 16 11 C -0.52 -14.99 9.39 -34.44 -0.32 -15.31 16 12 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 13 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 14 N -0.90 -26.84 13.29 55.43 0.74 -26.11 16 15 Si 0.90 22.08 29.54 -169.99 -5.02 17.06 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 18 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 19 C 0.11 1.76 4.97 -4.04 -0.02 1.74 16 20 C -0.13 -1.80 5.01 -26.73 -0.13 -1.93 16 21 C -0.09 -1.01 2.92 -90.63 -0.26 -1.28 16 22 C -0.15 -1.42 9.19 37.16 0.34 -1.08 16 23 C -0.15 -1.69 8.95 37.15 0.33 -1.35 16 24 C -0.10 -1.57 9.36 -39.58 -0.37 -1.94 16 25 C -0.09 -1.22 5.88 -104.62 -0.62 -1.84 16 26 C -0.12 -1.26 9.60 36.01 0.35 -0.92 16 27 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.07 0.62 5.95 -51.92 -0.31 0.31 16 29 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 30 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 31 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 32 H 0.09 1.21 7.16 -51.93 -0.37 0.83 16 33 H 0.09 1.27 7.34 -51.93 -0.38 0.89 16 34 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 35 H 0.04 1.25 7.42 -51.93 -0.39 0.86 16 36 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 37 H 0.08 1.41 6.50 -51.93 -0.34 1.07 16 38 H 0.06 0.85 6.43 -51.93 -0.33 0.52 16 39 H 0.06 0.76 7.24 -51.93 -0.38 0.39 16 40 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.06 0.73 6.57 -51.93 -0.34 0.39 16 48 H 0.12 1.74 8.06 -52.49 -0.42 1.32 16 49 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 50 H 0.06 0.73 8.09 -51.93 -0.42 0.31 16 51 H 0.07 0.67 5.95 -51.93 -0.31 0.36 16 LS Contribution 407.78 15.07 6.15 6.15 Total: -1.00 -33.82 407.78 -10.04 -43.86 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -9.02 Total: 0.67 kcal Atomic # 6 Polarization: -12.30 SS G_CDS: -2.54 Total: -14.84 kcal Atomic # 7 Polarization: -39.45 SS G_CDS: 0.31 Total: -39.15 kcal Atomic # 8 Polarization: -13.84 SS G_CDS: 0.09 Total: -13.75 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -33.82 -10.04 -43.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000517769974.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.548 kcal (2) G-P(sol) polarization free energy of solvation -33.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds