Wall clock time and date at job start Tue Mar 31 2020 11:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38254 * 119.99858 * 2 1 4 4 C 1.38211 * 120.00257 * 180.02562 * 3 2 1 5 5 C 1.38257 * 119.99643 * 0.02562 * 4 3 2 6 6 C 1.50700 * 120.00072 * 179.97438 * 5 4 3 7 7 C 1.50702 * 109.46869 * 89.99977 * 6 5 4 8 8 O 1.21283 * 120.00262 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99928 * 179.72354 * 7 6 5 10 10 C 1.46499 * 120.00199 * 180.27479 * 9 7 6 11 11 C 1.50697 * 109.46949 * 90.00203 * 10 9 7 12 12 H 1.08004 * 120.00186 * 0.02562 * 11 10 9 13 13 C 1.37881 * 120.00081 * 180.02562 * 11 10 9 14 14 N 1.31519 * 120.00096 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 120.00103 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.46927 * 59.99717 * 15 13 11 17 17 H 1.48496 * 109.47287 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47040 * 299.99940 * 15 13 11 19 19 C 1.46506 * 120.00264 * 0.28128 * 9 7 6 20 20 C 1.52998 * 109.47320 * 89.99349 * 19 9 7 21 21 C 1.52996 * 109.47099 * 180.02562 * 20 19 9 22 22 C 1.52998 * 109.47019 * 175.00221 * 21 20 19 23 23 C 1.52994 * 109.47326 * 295.00098 * 21 20 19 24 24 C 1.38213 * 120.00106 * 0.25731 * 5 4 3 25 25 C 1.38211 * 120.00094 * 180.02562 * 2 1 3 26 26 C 1.50705 * 119.99840 * 359.97438 * 25 2 1 27 27 H 1.08997 * 109.47318 * 90.00261 * 1 2 3 28 28 H 1.09007 * 109.47194 * 209.99866 * 1 2 3 29 29 H 1.08997 * 109.47490 * 329.99561 * 1 2 3 30 30 H 1.08002 * 120.00131 * 0.02562 * 3 2 1 31 31 H 1.08002 * 120.00461 * 179.97438 * 4 3 2 32 32 H 1.09004 * 109.47210 * 330.00271 * 6 5 4 33 33 H 1.08994 * 109.47551 * 209.99923 * 6 5 4 34 34 H 1.09001 * 109.47567 * 210.00057 * 10 9 7 35 35 H 1.09005 * 109.47076 * 330.00563 * 10 9 7 36 36 H 0.96991 * 119.99957 * 180.02562 * 14 13 11 37 37 H 1.08994 * 109.46996 * 209.99677 * 19 9 7 38 38 H 1.09001 * 109.46578 * 329.99540 * 19 9 7 39 39 H 1.08997 * 109.47106 * 300.00561 * 20 19 9 40 40 H 1.09004 * 109.46895 * 60.00075 * 20 19 9 41 41 H 1.09002 * 109.46968 * 55.00650 * 21 20 19 42 42 H 1.09000 * 109.47516 * 59.99967 * 22 21 20 43 43 H 1.09002 * 109.47121 * 180.02562 * 22 21 20 44 44 H 1.09001 * 109.47093 * 300.00072 * 22 21 20 45 45 H 1.09002 * 109.47269 * 179.97438 * 23 21 20 46 46 H 1.08994 * 109.47221 * 300.00165 * 23 21 20 47 47 H 1.09007 * 109.46892 * 60.00092 * 23 21 20 48 48 H 1.08000 * 119.99831 * 179.72704 * 24 5 4 49 49 H 1.08998 * 109.46702 * 90.00471 * 26 25 2 50 50 H 1.09000 * 109.46903 * 210.00299 * 26 25 2 51 51 H 1.08992 * 109.47231 * 329.99903 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5803 1.1974 -0.0005 5 6 4.2716 0.0001 -0.0016 6 6 5.7786 0.0001 -0.0028 7 6 6.2820 -0.0005 1.4177 8 8 5.4946 -0.0014 2.3402 9 7 7.6073 -0.0063 1.6630 10 6 8.0966 -0.0130 3.0438 11 6 8.2592 -1.4361 3.5122 12 1 8.0222 -2.2538 2.8476 13 6 8.7107 -1.6943 4.7891 14 7 8.9989 -0.6986 5.5986 15 14 8.9129 -3.4583 5.3695 16 1 9.8886 -4.1580 4.4957 17 1 9.4088 -3.4652 6.7692 18 1 7.6026 -4.1540 5.3047 19 6 8.5585 -0.0057 0.5488 20 6 8.8949 1.4370 0.1660 21 6 9.8878 1.4375 -0.9980 22 6 10.1285 2.8753 -1.4622 23 6 11.2111 0.8213 -0.5398 24 6 3.5806 -1.1969 -0.0075 25 6 2.1981 -1.1969 -0.0005 26 6 1.4445 -2.5021 -0.0005 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3634 0.8899 0.5139 30 1 1.6582 2.1327 0.0004 31 1 4.1204 2.1327 -0.0010 32 1 6.1416 0.8903 -0.5165 33 1 6.1416 -0.8896 -0.5172 34 1 9.0588 0.4971 3.0909 35 1 7.3810 0.5011 3.6854 36 1 9.3167 -0.8803 6.4968 37 1 9.4694 -0.5239 0.8485 38 1 8.1157 -0.5149 -0.3072 39 1 7.9840 1.9551 -0.1336 40 1 9.3377 1.9461 1.0221 41 1 9.4809 0.8527 -1.8229 42 1 10.5353 3.4603 -0.6374 43 1 10.8355 2.8757 -2.2918 44 1 9.1857 3.3144 -1.7886 45 1 11.9183 0.8213 -1.3692 46 1 11.6179 1.4062 0.2850 47 1 11.0396 -0.2031 -0.2090 48 1 4.1207 -2.1321 -0.0128 49 1 1.2626 -2.8165 -1.0282 50 1 2.0338 -3.2618 0.5130 51 1 0.4924 -2.3719 0.5137 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000517769974.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:12 Heat of formation + Delta-G solvation = -62.540824 kcal Electronic energy + Delta-G solvation = -26887.954525 eV Core-core repulsion = 23364.155926 eV Total energy + Delta-G solvation = -3523.798599 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.14233 -40.07220 -37.96466 -36.10730 -35.10298 -34.62115 -33.11012 -31.17438 -30.23335 -28.77356 -28.01988 -27.93535 -26.29257 -24.77912 -24.18647 -22.98249 -21.20843 -20.81498 -19.79309 -18.61368 -17.90495 -17.32995 -16.95223 -16.65879 -16.29767 -15.96778 -15.67575 -15.46433 -15.14314 -14.86930 -14.69804 -14.39088 -14.14809 -14.01439 -13.72045 -13.64841 -13.57221 -13.56064 -13.25884 -13.10894 -12.92941 -12.80178 -12.69737 -12.63477 -12.58260 -12.46878 -12.26791 -12.11959 -11.86972 -11.77059 -11.70027 -11.57048 -11.47728 -11.36911 -10.64926 -10.61280 -9.59802 -9.39343 -9.26486 -8.22698 -6.37658 0.43720 0.53265 1.34277 1.38785 1.45996 1.86435 2.29537 2.43838 2.88708 3.06526 3.71839 3.84149 3.89636 3.94702 4.04452 4.06675 4.15300 4.18673 4.25691 4.35436 4.42370 4.54432 4.56584 4.59835 4.73391 4.74021 4.77131 4.85560 4.86953 4.87490 4.89913 4.98587 5.02164 5.05251 5.06577 5.10194 5.17751 5.19756 5.24769 5.29726 5.38362 5.41786 5.52375 5.56594 5.56844 5.60541 5.71902 5.78497 5.86873 6.06660 6.19914 6.69805 6.82079 7.28283 7.51963 8.84124 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.008203 B = 0.004306 C = 0.003075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3412.452141 B = 6500.994093 C = 9103.188668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.103 4.103 3 C -0.126 4.126 4 C -0.125 4.125 5 C -0.078 4.078 6 C -0.088 4.088 7 C 0.499 3.501 8 O -0.592 6.592 9 N -0.602 5.602 10 C 0.266 3.734 11 C -0.542 4.542 12 H 0.053 0.947 13 C 0.008 3.992 14 N -0.929 5.929 15 Si 0.965 3.035 16 H -0.259 1.259 17 H -0.278 1.278 18 H -0.279 1.279 19 C 0.107 3.893 20 C -0.125 4.125 21 C -0.086 4.086 22 C -0.144 4.144 23 C -0.152 4.152 24 C -0.124 4.124 25 C -0.101 4.101 26 C -0.113 4.113 27 H 0.084 0.916 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.140 0.860 31 H 0.126 0.874 32 H 0.124 0.876 33 H 0.118 0.882 34 H 0.019 0.981 35 H -0.008 1.008 36 H 0.267 0.733 37 H 0.071 0.929 38 H 0.099 0.901 39 H 0.069 0.931 40 H 0.042 0.958 41 H 0.090 0.910 42 H 0.043 0.957 43 H 0.067 0.933 44 H 0.060 0.940 45 H 0.069 0.931 46 H 0.041 0.959 47 H 0.051 0.949 48 H 0.117 0.883 49 H 0.086 0.914 50 H 0.058 0.942 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.789 2.665 -20.123 21.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.103 4.103 3 C -0.143 4.143 4 C -0.143 4.143 5 C -0.079 4.079 6 C -0.127 4.127 7 C 0.288 3.712 8 O -0.473 6.473 9 N -0.333 5.333 10 C 0.144 3.856 11 C -0.580 4.580 12 H 0.071 0.929 13 C -0.191 4.191 14 N -0.569 5.569 15 Si 0.789 3.211 16 H -0.183 1.183 17 H -0.203 1.203 18 H -0.204 1.204 19 C -0.016 4.016 20 C -0.164 4.164 21 C -0.105 4.105 22 C -0.202 4.202 23 C -0.210 4.210 24 C -0.142 4.142 25 C -0.101 4.101 26 C -0.169 4.169 27 H 0.103 0.897 28 H 0.094 0.906 29 H 0.090 0.910 30 H 0.158 0.842 31 H 0.144 0.856 32 H 0.142 0.858 33 H 0.136 0.864 34 H 0.037 0.963 35 H 0.010 0.990 36 H 0.076 0.924 37 H 0.090 0.910 38 H 0.117 0.883 39 H 0.087 0.913 40 H 0.061 0.939 41 H 0.108 0.892 42 H 0.063 0.937 43 H 0.086 0.914 44 H 0.079 0.921 45 H 0.088 0.912 46 H 0.060 0.940 47 H 0.070 0.930 48 H 0.135 0.865 49 H 0.105 0.895 50 H 0.077 0.923 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.099 2.706 -19.456 21.247 hybrid contribution 0.596 -0.586 1.279 1.528 sum -7.503 2.120 -18.177 19.779 Atomic orbital electron populations 1.20872 0.89176 1.03459 1.03255 1.20122 0.97599 0.92343 1.00250 1.21241 0.93822 0.98502 1.00771 1.21151 0.95052 0.97454 1.00614 1.19479 0.94248 0.93992 1.00148 1.20733 0.92680 1.06667 0.92628 1.21205 0.81973 0.75947 0.92058 1.90654 1.56240 1.51940 1.48482 1.48242 1.05741 1.71179 1.08108 1.18636 0.92787 0.95781 0.78368 1.21676 1.44300 0.93030 0.99024 0.92916 1.25853 0.94823 1.01938 0.96457 1.70050 1.45664 1.33206 1.07933 0.85505 0.78555 0.79285 0.77711 1.18302 1.20278 1.20423 1.21832 0.93194 0.97893 0.88644 1.22037 0.99864 0.96022 0.98474 1.21037 0.94848 0.97755 0.96884 1.21817 1.02045 0.95279 1.01020 1.21924 0.97268 1.00598 1.01181 1.21045 0.94498 0.97509 1.01142 1.20051 0.93345 0.96447 1.00230 1.20876 1.00108 0.92721 1.03231 0.89710 0.90596 0.91036 0.84186 0.85649 0.85808 0.86402 0.96315 0.98954 0.92449 0.91020 0.88281 0.91265 0.93947 0.89178 0.93741 0.91395 0.92131 0.91241 0.94021 0.92993 0.86506 0.89547 0.92257 0.90019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.90 9.60 71.24 0.68 -1.22 16 2 C -0.10 -2.57 5.88 -19.87 -0.12 -2.69 16 3 C -0.13 -3.26 9.70 22.27 0.22 -3.04 16 4 C -0.12 -3.65 9.70 22.27 0.22 -3.43 16 5 C -0.08 -2.46 4.37 -19.87 -0.09 -2.55 16 6 C -0.09 -2.61 4.38 29.10 0.13 -2.48 16 7 C 0.50 21.52 7.67 87.66 0.67 22.20 16 8 O -0.59 -32.33 15.61 -3.04 -0.05 -32.38 16 9 N -0.60 -26.15 2.46 -826.15 -2.03 -28.18 16 10 C 0.27 14.80 5.16 85.63 0.44 15.25 16 11 C -0.54 -32.02 9.39 25.60 0.24 -31.78 16 12 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 13 C 0.01 0.48 5.46 84.66 0.46 0.94 16 14 N -0.93 -57.50 13.29 21.45 0.28 -57.22 16 15 Si 0.97 45.81 29.54 68.60 2.03 47.83 16 16 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 17 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 18 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 19 C 0.11 3.34 4.97 86.38 0.43 3.77 16 20 C -0.13 -3.29 5.01 30.59 0.15 -3.14 16 21 C -0.09 -1.69 2.92 -10.80 -0.03 -1.72 16 22 C -0.14 -2.48 9.19 71.98 0.66 -1.82 16 23 C -0.15 -3.23 8.95 71.98 0.64 -2.58 16 24 C -0.12 -3.82 9.36 22.27 0.21 -3.62 16 25 C -0.10 -2.72 5.88 -19.86 -0.12 -2.84 16 26 C -0.11 -2.30 9.60 71.24 0.68 -1.61 16 27 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.08 1.18 5.95 -2.38 -0.01 1.17 16 29 H 0.07 1.11 8.09 -2.39 -0.02 1.09 16 30 H 0.14 2.86 8.06 -2.91 -0.02 2.83 16 31 H 0.13 3.29 8.06 -2.91 -0.02 3.27 16 32 H 0.12 2.89 7.16 -2.38 -0.02 2.87 16 33 H 0.12 2.92 7.34 -2.39 -0.02 2.90 16 34 H 0.02 1.07 8.07 -2.39 -0.02 1.05 16 35 H -0.01 -0.50 7.42 -2.38 -0.02 -0.51 16 36 H 0.27 15.50 8.31 -92.72 -0.77 14.73 16 37 H 0.07 2.43 6.50 -2.39 -0.02 2.42 16 38 H 0.10 2.41 6.43 -2.39 -0.02 2.39 16 39 H 0.07 1.68 7.24 -2.39 -0.02 1.66 16 40 H 0.04 1.34 8.14 -2.38 -0.02 1.32 16 41 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 46 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 47 H 0.05 1.19 6.57 -2.38 -0.02 1.17 16 48 H 0.12 3.46 8.06 -2.91 -0.02 3.44 16 49 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 50 H 0.06 1.27 8.09 -2.39 -0.02 1.25 16 51 H 0.08 1.42 5.95 -2.39 -0.01 1.40 16 Total: -1.00 -77.92 407.78 6.60 -71.32 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: 0.88 Total: 20.99 kcal Atomic # 6 Polarization: -27.86 SS G_CDS: 5.49 Total: -22.37 kcal Atomic # 7 Polarization: -83.65 SS G_CDS: -1.74 Total: -85.40 kcal Atomic # 8 Polarization: -32.33 SS G_CDS: -0.05 Total: -32.38 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.83 kcal Total: -77.92 6.60 -71.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000517769974.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.778 kcal (2) G-P(sol) polarization free energy of solvation -77.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds