Wall clock time and date at job start Tue Mar 31 2020 11:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38255 * 120.00266 * 2 1 4 4 C 1.38212 * 120.00300 * 179.97438 * 3 2 1 5 5 C 1.38260 * 119.99650 * 0.28729 * 4 3 2 6 6 C 1.38208 * 120.00082 * 359.50197 * 5 4 3 7 7 C 1.50698 * 120.00206 * 180.26181 * 6 5 4 8 8 C 1.53000 * 109.46770 * 270.21487 * 7 6 5 9 9 C 1.50707 * 109.47153 * 179.97438 * 8 7 6 10 10 O 1.21275 * 119.99549 * 359.97438 * 9 8 7 11 11 N 1.34778 * 119.99954 * 180.02562 * 9 8 7 12 12 C 1.46495 * 120.00157 * 359.97438 * 11 9 8 13 13 C 1.50703 * 109.47046 * 90.00159 * 12 11 9 14 14 H 1.08000 * 119.99991 * 0.02562 * 13 12 11 15 15 C 1.37880 * 120.00014 * 179.97438 * 13 12 11 16 16 N 1.31514 * 119.99870 * 179.97438 * 15 13 12 17 17 Si 1.86804 * 119.99787 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.46929 * 90.00131 * 17 15 13 19 19 H 1.48502 * 109.46768 * 209.99885 * 17 15 13 20 20 H 1.48494 * 109.47234 * 329.99503 * 17 15 13 21 21 C 1.46503 * 119.99773 * 180.02562 * 11 9 8 22 22 C 1.53003 * 109.47053 * 89.99509 * 21 11 9 23 23 C 1.52999 * 109.46993 * 180.02562 * 22 21 11 24 24 C 1.52998 * 109.47255 * 175.00443 * 23 22 21 25 25 C 1.53004 * 109.46910 * 295.00395 * 23 22 21 26 26 C 1.38215 * 119.99989 * 180.02562 * 2 1 3 27 27 H 1.08994 * 109.47517 * 89.99651 * 1 2 3 28 28 H 1.08997 * 109.46988 * 210.00044 * 1 2 3 29 29 H 1.09009 * 109.46840 * 329.99292 * 1 2 3 30 30 H 1.07999 * 119.99759 * 0.02562 * 3 2 1 31 31 H 1.08002 * 119.99812 * 180.02562 * 4 3 2 32 32 H 1.08004 * 119.99616 * 179.72197 * 5 4 3 33 33 H 1.09005 * 109.47039 * 30.20591 * 7 6 5 34 34 H 1.08995 * 109.47567 * 150.21599 * 7 6 5 35 35 H 1.08997 * 109.47347 * 299.99738 * 8 7 6 36 36 H 1.09001 * 109.47565 * 60.00121 * 8 7 6 37 37 H 1.08998 * 109.47112 * 210.00323 * 12 11 9 38 38 H 1.09000 * 109.47258 * 330.00364 * 12 11 9 39 39 H 0.97002 * 119.99890 * 179.97438 * 16 15 13 40 40 H 1.08994 * 109.47103 * 210.00065 * 21 11 9 41 41 H 1.08999 * 109.46754 * 329.99712 * 21 11 9 42 42 H 1.09000 * 109.46967 * 300.00037 * 22 21 11 43 43 H 1.08997 * 109.46672 * 60.00378 * 22 21 11 44 44 H 1.09008 * 109.47150 * 54.99553 * 23 22 21 45 45 H 1.09000 * 109.47286 * 59.99850 * 24 23 22 46 46 H 1.09006 * 109.47023 * 179.97438 * 24 23 22 47 47 H 1.09000 * 109.46579 * 299.99496 * 24 23 22 48 48 H 1.08997 * 109.47755 * 60.00145 * 25 23 22 49 49 H 1.09006 * 109.47069 * 179.97438 * 25 23 22 50 50 H 1.09000 * 109.47062 * 299.99802 * 25 23 22 51 51 H 1.08001 * 119.99700 * 359.96970 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 -0.0001 -0.0049 6 6 3.5806 -1.1970 -0.0005 7 6 4.3341 -2.5021 -0.0005 8 6 4.5891 -2.9437 -1.4431 9 6 5.3431 -4.2486 -1.4432 10 8 5.6470 -4.7733 -0.3929 11 7 5.6806 -4.8318 -2.6104 12 6 5.3140 -4.1976 -3.8791 13 6 6.4183 -3.2688 -4.3139 14 1 7.3047 -3.1620 -3.7062 15 6 6.2974 -2.5562 -5.4881 16 7 7.2609 -1.7453 -5.8672 17 14 4.7645 -2.7415 -6.5395 18 1 3.7515 -1.7406 -6.1184 19 1 5.1135 -2.5225 -7.9662 20 1 4.2102 -4.1086 -6.3698 21 6 6.4131 -6.1005 -2.6105 22 6 5.4188 -7.2634 -2.6112 23 6 6.1838 -8.5885 -2.6106 24 6 5.1942 -9.7486 -2.4858 25 6 6.9678 -8.7252 -3.9174 26 6 2.1981 -1.1970 -0.0005 27 1 -0.3634 0.0001 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5140 30 1 1.6583 2.1326 0.0004 31 1 4.1204 2.1326 0.0010 32 1 5.3517 -0.0001 -0.0091 33 1 5.2866 -2.3718 0.5133 34 1 3.7450 -3.2618 0.5132 35 1 3.6367 -3.0740 -1.9569 36 1 5.1782 -2.1841 -1.9569 37 1 5.1642 -4.9646 -4.6388 38 1 4.3924 -3.6303 -3.7488 39 1 7.1760 -1.2442 -6.6935 40 1 7.0402 -6.1580 -3.5001 41 1 7.0393 -6.1585 -1.7202 42 1 4.7918 -7.2059 -1.7215 43 1 4.7926 -7.2054 -3.5015 44 1 6.8754 -8.6084 -1.7683 45 1 4.5028 -9.7287 -3.3281 46 1 5.7393 -10.6927 -2.4858 47 1 4.6358 -9.6511 -1.5548 48 1 7.6728 -7.8988 -4.0064 49 1 7.5132 -9.6691 -3.9168 50 1 6.2764 -8.7053 -4.7597 51 1 1.6580 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000517770039.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:15 Heat of formation + Delta-G solvation = -50.704822 kcal Electronic energy + Delta-G solvation = -26662.425102 eV Core-core repulsion = 23139.139750 eV Total energy + Delta-G solvation = -3523.285352 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.60267 -39.01117 -36.66436 -34.80768 -34.10931 -32.51712 -32.20116 -30.17375 -28.95587 -27.47147 -27.02066 -26.84253 -24.72432 -22.82379 -22.35708 -21.77874 -20.15192 -19.76842 -18.17332 -17.05524 -16.58248 -16.13738 -15.58447 -15.51349 -15.07580 -14.66417 -14.56883 -14.08464 -13.93334 -13.75747 -13.58388 -13.15888 -12.94309 -12.75976 -12.67029 -12.51944 -12.36826 -12.22771 -12.14387 -12.06051 -11.86518 -11.64034 -11.29837 -11.21154 -11.03722 -10.82938 -10.81578 -10.76037 -10.63728 -10.49956 -10.47660 -10.29260 -10.13669 -9.61941 -9.10817 -8.72786 -8.64174 -8.41656 -7.72714 -6.22387 -4.23844 1.48327 1.51870 3.16873 3.24376 3.26014 3.37586 3.77318 3.96437 4.25856 4.83794 4.88340 5.00283 5.02553 5.07448 5.10002 5.11535 5.23899 5.31913 5.43690 5.48667 5.53500 5.57918 5.62755 5.69143 5.70985 5.76878 5.78284 5.82627 5.86196 5.95369 5.97522 6.02114 6.09089 6.14418 6.21812 6.24926 6.32606 6.35263 6.36853 6.46360 6.57853 6.60117 6.60901 6.61954 6.67018 6.70866 6.85642 7.15922 7.36502 7.44534 8.14358 8.41500 8.82197 8.95566 9.37371 10.90280 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.009431 B = 0.003916 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2968.164276 B = 7149.088151 C = 8924.375541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.090 4.090 3 C -0.130 4.130 4 C -0.115 4.115 5 C -0.118 4.118 6 C -0.069 4.069 7 C -0.064 4.064 8 C -0.131 4.131 9 C 0.519 3.481 10 O -0.573 6.573 11 N -0.591 5.591 12 C 0.208 3.792 13 C -0.540 4.540 14 H 0.078 0.922 15 C 0.077 3.923 16 N -0.890 5.890 17 Si 0.869 3.131 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.264 1.264 21 C 0.119 3.881 22 C -0.127 4.127 23 C -0.094 4.094 24 C -0.144 4.144 25 C -0.150 4.150 26 C -0.119 4.119 27 H 0.068 0.932 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.116 0.884 31 H 0.120 0.880 32 H 0.123 0.877 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.107 0.893 37 H 0.033 0.967 38 H 0.029 0.971 39 H 0.266 0.734 40 H 0.080 0.920 41 H 0.072 0.928 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.069 0.931 45 H 0.052 0.948 46 H 0.051 0.949 47 H 0.052 0.948 48 H 0.061 0.939 49 H 0.049 0.951 50 H 0.054 0.946 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.764 -2.945 8.364 13.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.090 4.090 3 C -0.148 4.148 4 C -0.133 4.133 5 C -0.136 4.136 6 C -0.069 4.069 7 C -0.101 4.101 8 C -0.171 4.171 9 C 0.307 3.693 10 O -0.454 6.454 11 N -0.320 5.320 12 C 0.087 3.913 13 C -0.578 4.578 14 H 0.096 0.904 15 C -0.126 4.126 16 N -0.528 5.528 17 Si 0.695 3.305 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.189 1.189 21 C -0.004 4.004 22 C -0.166 4.166 23 C -0.113 4.113 24 C -0.202 4.202 25 C -0.207 4.207 26 C -0.137 4.137 27 H 0.087 0.913 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.134 0.866 31 H 0.138 0.862 32 H 0.141 0.859 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.104 0.896 36 H 0.126 0.874 37 H 0.051 0.949 38 H 0.047 0.953 39 H 0.076 0.924 40 H 0.098 0.902 41 H 0.091 0.909 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.088 0.912 45 H 0.071 0.929 46 H 0.070 0.930 47 H 0.071 0.929 48 H 0.080 0.920 49 H 0.068 0.932 50 H 0.073 0.927 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -9.547 -3.085 8.720 13.292 hybrid contribution -0.672 0.173 -0.999 1.216 sum -10.219 -2.912 7.721 13.134 Atomic orbital electron populations 1.20769 0.91513 1.02412 1.02214 1.19868 0.95827 0.93264 1.00060 1.20951 0.94307 0.97236 1.02344 1.21114 0.94243 0.97994 0.99915 1.21121 1.00181 0.91947 1.00331 1.19977 0.93638 0.95310 0.97997 1.20357 1.00370 0.92997 0.96424 1.21621 1.01510 0.96482 0.97477 1.20494 0.79456 0.86092 0.83210 1.90588 1.57198 1.66176 1.31452 1.47928 1.55070 1.21932 1.07105 1.19802 0.96563 0.93670 0.81268 1.21374 1.04527 1.24206 1.07723 0.90393 1.24864 0.96093 0.94541 0.97116 1.69891 1.32516 1.26940 1.23440 0.86961 0.83851 0.79307 0.80365 1.19804 1.20871 1.18883 1.21374 0.93997 0.82248 1.02818 1.21999 0.98789 0.93808 1.02020 1.21049 0.97264 0.94545 0.98427 1.21822 0.99118 0.97714 1.01527 1.21911 1.00229 1.01491 0.97118 1.20929 0.93647 0.97444 1.01644 0.91292 0.91705 0.91830 0.86550 0.86219 0.85866 0.90391 0.90771 0.89612 0.87444 0.94947 0.95264 0.92380 0.90203 0.90942 0.92003 0.92046 0.91222 0.92884 0.93018 0.92911 0.91972 0.93170 0.92726 0.86257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.06 10.01 36.01 0.36 -0.70 16 2 C -0.09 -1.12 5.88 -104.62 -0.62 -1.73 16 3 C -0.13 -1.59 9.70 -39.58 -0.38 -1.98 16 4 C -0.11 -1.48 10.05 -39.58 -0.40 -1.88 16 5 C -0.12 -1.69 9.70 -39.58 -0.38 -2.07 16 6 C -0.07 -1.02 5.13 -104.63 -0.54 -1.55 16 7 C -0.06 -1.00 4.63 -27.88 -0.13 -1.13 16 8 C -0.13 -2.34 4.23 -27.88 -0.12 -2.46 16 9 C 0.52 10.50 7.67 -10.98 -0.08 10.41 16 10 O -0.57 -12.49 15.56 5.56 0.09 -12.41 16 11 N -0.59 -12.05 2.46 -175.06 -0.43 -12.48 16 12 C 0.21 4.58 4.03 -5.20 -0.02 4.56 16 13 C -0.54 -14.13 9.83 -34.44 -0.34 -14.47 16 14 H 0.08 2.29 8.06 -52.49 -0.42 1.87 16 15 C 0.08 2.08 5.47 -17.82 -0.10 1.99 16 16 N -0.89 -25.79 13.96 55.43 0.77 -25.01 16 17 Si 0.87 19.84 27.47 -169.99 -4.67 15.17 16 18 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.26 -5.71 6.54 56.52 0.37 -5.34 16 21 C 0.12 2.15 5.16 -4.04 -0.02 2.13 16 22 C -0.13 -1.95 5.01 -26.73 -0.13 -2.09 16 23 C -0.09 -1.20 2.92 -90.62 -0.26 -1.46 16 24 C -0.14 -1.60 9.19 37.16 0.34 -1.26 16 25 C -0.15 -1.84 8.95 37.16 0.33 -1.51 16 26 C -0.12 -1.60 9.36 -39.58 -0.37 -1.97 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 29 H 0.06 0.51 8.09 -51.92 -0.42 0.09 16 30 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 31 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 32 H 0.12 1.69 8.06 -52.48 -0.42 1.26 16 33 H 0.08 1.26 8.04 -51.93 -0.42 0.84 16 34 H 0.07 1.13 8.04 -51.93 -0.42 0.71 16 35 H 0.09 1.44 7.40 -51.93 -0.38 1.05 16 36 H 0.11 2.11 8.00 -51.93 -0.42 1.69 16 37 H 0.03 0.71 7.13 -51.93 -0.37 0.34 16 38 H 0.03 0.62 5.87 -51.93 -0.30 0.32 16 39 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 40 H 0.08 1.46 6.50 -51.93 -0.34 1.12 16 41 H 0.07 1.35 7.42 -51.93 -0.39 0.97 16 42 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.07 0.89 8.14 -51.92 -0.42 0.47 16 45 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 47 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 48 H 0.06 0.81 6.57 -51.93 -0.34 0.47 16 49 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 50 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 51 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 LS Contribution 410.15 15.07 6.18 6.18 Total: -1.00 -29.76 410.15 -10.22 -39.98 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -9.30 Total: 5.73 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: -2.86 Total: -17.17 kcal Atomic # 7 Polarization: -37.83 SS G_CDS: 0.34 Total: -37.49 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: 0.09 Total: -12.41 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -4.67 Total: 15.17 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -29.76 -10.22 -39.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000517770039.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.723 kcal (2) G-P(sol) polarization free energy of solvation -29.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds