Wall clock time and date at job start Tue Mar 31 2020 11:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38255 * 120.00266 * 2 1 4 4 C 1.38212 * 120.00300 * 179.97438 * 3 2 1 5 5 C 1.38260 * 119.99650 * 0.28729 * 4 3 2 6 6 C 1.38208 * 120.00082 * 359.50197 * 5 4 3 7 7 C 1.50698 * 120.00206 * 180.26181 * 6 5 4 8 8 C 1.53000 * 109.46770 * 270.21487 * 7 6 5 9 9 C 1.50707 * 109.47153 * 179.97438 * 8 7 6 10 10 O 1.21275 * 119.99549 * 359.97438 * 9 8 7 11 11 N 1.34778 * 119.99954 * 180.02562 * 9 8 7 12 12 C 1.46495 * 120.00157 * 359.97438 * 11 9 8 13 13 C 1.50703 * 109.47046 * 90.00159 * 12 11 9 14 14 H 1.08000 * 119.99991 * 0.02562 * 13 12 11 15 15 C 1.37880 * 120.00014 * 179.97438 * 13 12 11 16 16 N 1.31514 * 119.99870 * 179.97438 * 15 13 12 17 17 Si 1.86804 * 119.99787 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.46929 * 90.00131 * 17 15 13 19 19 H 1.48502 * 109.46768 * 209.99885 * 17 15 13 20 20 H 1.48494 * 109.47234 * 329.99503 * 17 15 13 21 21 C 1.46503 * 119.99773 * 180.02562 * 11 9 8 22 22 C 1.53003 * 109.47053 * 89.99509 * 21 11 9 23 23 C 1.52999 * 109.46993 * 180.02562 * 22 21 11 24 24 C 1.52998 * 109.47255 * 175.00443 * 23 22 21 25 25 C 1.53004 * 109.46910 * 295.00395 * 23 22 21 26 26 C 1.38215 * 119.99989 * 180.02562 * 2 1 3 27 27 H 1.08994 * 109.47517 * 89.99651 * 1 2 3 28 28 H 1.08997 * 109.46988 * 210.00044 * 1 2 3 29 29 H 1.09009 * 109.46840 * 329.99292 * 1 2 3 30 30 H 1.07999 * 119.99759 * 0.02562 * 3 2 1 31 31 H 1.08002 * 119.99812 * 180.02562 * 4 3 2 32 32 H 1.08004 * 119.99616 * 179.72197 * 5 4 3 33 33 H 1.09005 * 109.47039 * 30.20591 * 7 6 5 34 34 H 1.08995 * 109.47567 * 150.21599 * 7 6 5 35 35 H 1.08997 * 109.47347 * 299.99738 * 8 7 6 36 36 H 1.09001 * 109.47565 * 60.00121 * 8 7 6 37 37 H 1.08998 * 109.47112 * 210.00323 * 12 11 9 38 38 H 1.09000 * 109.47258 * 330.00364 * 12 11 9 39 39 H 0.97002 * 119.99890 * 179.97438 * 16 15 13 40 40 H 1.08994 * 109.47103 * 210.00065 * 21 11 9 41 41 H 1.08999 * 109.46754 * 329.99712 * 21 11 9 42 42 H 1.09000 * 109.46967 * 300.00037 * 22 21 11 43 43 H 1.08997 * 109.46672 * 60.00378 * 22 21 11 44 44 H 1.09008 * 109.47150 * 54.99553 * 23 22 21 45 45 H 1.09000 * 109.47286 * 59.99850 * 24 23 22 46 46 H 1.09006 * 109.47023 * 179.97438 * 24 23 22 47 47 H 1.09000 * 109.46579 * 299.99496 * 24 23 22 48 48 H 1.08997 * 109.47755 * 60.00145 * 25 23 22 49 49 H 1.09006 * 109.47069 * 179.97438 * 25 23 22 50 50 H 1.09000 * 109.47062 * 299.99802 * 25 23 22 51 51 H 1.08001 * 119.99700 * 359.96970 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 -0.0001 -0.0049 6 6 3.5806 -1.1970 -0.0005 7 6 4.3341 -2.5021 -0.0005 8 6 4.5891 -2.9437 -1.4431 9 6 5.3431 -4.2486 -1.4432 10 8 5.6470 -4.7733 -0.3929 11 7 5.6806 -4.8318 -2.6104 12 6 5.3140 -4.1976 -3.8791 13 6 6.4183 -3.2688 -4.3139 14 1 7.3047 -3.1620 -3.7062 15 6 6.2974 -2.5562 -5.4881 16 7 7.2609 -1.7453 -5.8672 17 14 4.7645 -2.7415 -6.5395 18 1 3.7515 -1.7406 -6.1184 19 1 5.1135 -2.5225 -7.9662 20 1 4.2102 -4.1086 -6.3698 21 6 6.4131 -6.1005 -2.6105 22 6 5.4188 -7.2634 -2.6112 23 6 6.1838 -8.5885 -2.6106 24 6 5.1942 -9.7486 -2.4858 25 6 6.9678 -8.7252 -3.9174 26 6 2.1981 -1.1970 -0.0005 27 1 -0.3634 0.0001 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5140 30 1 1.6583 2.1326 0.0004 31 1 4.1204 2.1326 0.0010 32 1 5.3517 -0.0001 -0.0091 33 1 5.2866 -2.3718 0.5133 34 1 3.7450 -3.2618 0.5132 35 1 3.6367 -3.0740 -1.9569 36 1 5.1782 -2.1841 -1.9569 37 1 5.1642 -4.9646 -4.6388 38 1 4.3924 -3.6303 -3.7488 39 1 7.1760 -1.2442 -6.6935 40 1 7.0402 -6.1580 -3.5001 41 1 7.0393 -6.1585 -1.7202 42 1 4.7918 -7.2059 -1.7215 43 1 4.7926 -7.2054 -3.5015 44 1 6.8754 -8.6084 -1.7683 45 1 4.5028 -9.7287 -3.3281 46 1 5.7393 -10.6927 -2.4858 47 1 4.6358 -9.6511 -1.5548 48 1 7.6728 -7.8988 -4.0064 49 1 7.5132 -9.6691 -3.9168 50 1 6.2764 -8.7053 -4.7597 51 1 1.6580 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000517770039.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:15 Heat of formation + Delta-G solvation = -63.464665 kcal Electronic energy + Delta-G solvation = -26662.978410 eV Core-core repulsion = 23139.139750 eV Total energy + Delta-G solvation = -3523.838660 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.04338 -40.20809 -37.93040 -36.40727 -35.30231 -34.49827 -33.19649 -31.49388 -30.40426 -29.11191 -27.99002 -27.72025 -25.99844 -24.58211 -23.78843 -22.83037 -21.23147 -20.87826 -19.82640 -19.07840 -18.05340 -17.26653 -17.14751 -16.84858 -16.32871 -16.06844 -15.80016 -15.57506 -15.09947 -14.83753 -14.68433 -14.57594 -14.28114 -14.05796 -13.89425 -13.83385 -13.70906 -13.53792 -13.32760 -13.12667 -12.99267 -12.91915 -12.70192 -12.55599 -12.40268 -12.17241 -12.14682 -12.10303 -11.82213 -11.79543 -11.72166 -11.63787 -11.56383 -11.40938 -10.83861 -10.68817 -9.67052 -9.45450 -9.42475 -8.31051 -6.38387 0.44918 0.50453 1.38701 1.39432 1.48996 1.72264 2.27650 2.33066 2.86241 3.03095 3.59470 3.89255 3.91672 3.95951 4.05511 4.07447 4.09548 4.20349 4.22754 4.29527 4.37485 4.52874 4.56285 4.57322 4.64888 4.67238 4.71497 4.80049 4.81319 4.84345 4.86653 4.87092 4.92446 4.95138 5.03224 5.04671 5.12239 5.14641 5.15104 5.25189 5.32177 5.34275 5.43888 5.47926 5.51053 5.59577 5.70665 5.71466 5.76553 6.16426 6.17553 6.59888 6.68341 7.22481 7.33871 8.85366 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.009431 B = 0.003916 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2968.164276 B = 7149.088151 C = 8924.375541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.094 4.094 3 C -0.133 4.133 4 C -0.122 4.122 5 C -0.141 4.141 6 C -0.085 4.085 7 C -0.052 4.052 8 C -0.123 4.123 9 C 0.512 3.488 10 O -0.591 6.591 11 N -0.597 5.597 12 C 0.218 3.782 13 C -0.540 4.540 14 H 0.028 0.972 15 C 0.021 3.979 16 N -0.942 5.942 17 Si 0.937 3.063 18 H -0.263 1.263 19 H -0.284 1.284 20 H -0.237 1.237 21 C 0.116 3.884 22 C -0.115 4.115 23 C -0.092 4.092 24 C -0.140 4.140 25 C -0.149 4.149 26 C -0.129 4.129 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.143 0.857 31 H 0.138 0.862 32 H 0.116 0.884 33 H 0.063 0.937 34 H 0.079 0.921 35 H 0.102 0.898 36 H 0.085 0.915 37 H 0.045 0.955 38 H 0.046 0.954 39 H 0.268 0.732 40 H 0.074 0.926 41 H 0.060 0.940 42 H 0.052 0.948 43 H 0.064 0.936 44 H 0.066 0.934 45 H 0.057 0.943 46 H 0.067 0.933 47 H 0.052 0.948 48 H 0.046 0.954 49 H 0.068 0.932 50 H 0.056 0.944 51 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.983 -3.684 7.943 15.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.094 4.094 3 C -0.150 4.150 4 C -0.140 4.140 5 C -0.159 4.159 6 C -0.085 4.085 7 C -0.090 4.090 8 C -0.163 4.163 9 C 0.302 3.698 10 O -0.474 6.474 11 N -0.326 5.326 12 C 0.096 3.904 13 C -0.579 4.579 14 H 0.046 0.954 15 C -0.178 4.178 16 N -0.581 5.581 17 Si 0.759 3.241 18 H -0.188 1.188 19 H -0.210 1.210 20 H -0.160 1.160 21 C -0.007 4.007 22 C -0.154 4.154 23 C -0.111 4.111 24 C -0.197 4.197 25 C -0.206 4.206 26 C -0.146 4.146 27 H 0.094 0.906 28 H 0.092 0.908 29 H 0.098 0.902 30 H 0.161 0.839 31 H 0.155 0.845 32 H 0.134 0.866 33 H 0.082 0.918 34 H 0.097 0.903 35 H 0.120 0.880 36 H 0.103 0.897 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.077 0.923 40 H 0.093 0.907 41 H 0.078 0.922 42 H 0.071 0.929 43 H 0.083 0.917 44 H 0.085 0.915 45 H 0.076 0.924 46 H 0.086 0.914 47 H 0.071 0.929 48 H 0.065 0.935 49 H 0.087 0.913 50 H 0.075 0.925 51 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -12.766 -3.849 8.318 15.715 hybrid contribution 0.442 0.453 -0.794 1.015 sum -12.323 -3.396 7.525 14.833 Atomic orbital electron populations 1.20824 0.89158 1.03743 1.02996 1.20277 0.97617 0.92789 0.98709 1.21330 0.94083 0.98471 1.01158 1.21388 0.95034 0.98094 0.99449 1.21241 1.00181 0.92827 1.01652 1.19920 0.94375 0.94580 0.99648 1.20205 1.00007 0.94002 0.94763 1.21570 1.01336 0.94368 0.98987 1.20931 0.79346 0.86634 0.82868 1.90568 1.57991 1.66836 1.31955 1.48027 1.55181 1.22669 1.06725 1.19625 0.95422 0.93249 0.82069 1.21495 1.04081 1.25086 1.07188 0.95375 1.25764 0.99589 0.93912 0.98522 1.70052 1.35244 1.28499 1.24307 0.85868 0.79472 0.80833 0.77884 1.18762 1.20989 1.16023 1.21493 0.94645 0.82603 1.01926 1.21885 0.98005 0.93832 1.01636 1.21047 0.97512 0.93859 0.98687 1.21781 0.98792 0.97422 1.01738 1.21895 1.00026 1.01863 0.96800 1.21142 0.93113 0.98722 1.01668 0.90620 0.90808 0.90186 0.83904 0.84459 0.86596 0.91829 0.90269 0.88009 0.89682 0.93681 0.93616 0.92277 0.90738 0.92192 0.92878 0.91729 0.91507 0.92426 0.91395 0.92901 0.93525 0.91325 0.92505 0.85023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.73 10.01 71.24 0.71 -1.02 16 2 C -0.09 -2.12 5.88 -19.87 -0.12 -2.23 16 3 C -0.13 -2.95 9.70 22.27 0.22 -2.74 16 4 C -0.12 -3.04 10.05 22.27 0.22 -2.81 16 5 C -0.14 -4.12 9.70 22.27 0.22 -3.90 16 6 C -0.09 -2.51 5.13 -19.87 -0.10 -2.61 16 7 C -0.05 -1.67 4.63 29.85 0.14 -1.53 16 8 C -0.12 -4.45 4.23 29.85 0.13 -4.33 16 9 C 0.51 21.14 7.67 87.66 0.67 21.82 16 10 O -0.59 -26.35 15.56 -3.02 -0.05 -26.40 16 11 N -0.60 -24.61 2.46 -826.16 -2.03 -26.64 16 12 C 0.22 9.48 4.03 85.63 0.35 9.82 16 13 C -0.54 -29.03 9.83 25.60 0.25 -28.78 16 14 H 0.03 1.75 8.06 -2.91 -0.02 1.72 16 15 C 0.02 1.15 5.47 84.66 0.46 1.61 16 16 N -0.94 -56.16 13.96 21.45 0.30 -55.86 16 17 Si 0.94 40.02 27.47 68.60 1.88 41.91 16 18 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 19 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 20 H -0.24 -9.05 6.54 99.48 0.65 -8.40 16 21 C 0.12 4.27 5.16 86.38 0.45 4.71 16 22 C -0.11 -3.43 5.01 30.59 0.15 -3.28 16 23 C -0.09 -2.23 2.92 -10.79 -0.03 -2.26 16 24 C -0.14 -2.77 9.19 71.98 0.66 -2.11 16 25 C -0.15 -3.44 8.95 71.98 0.64 -2.79 16 26 C -0.13 -3.30 9.36 22.27 0.21 -3.09 16 27 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.07 1.03 8.09 -2.39 -0.02 1.01 16 29 H 0.08 1.00 8.09 -2.38 -0.02 0.98 16 30 H 0.14 2.36 8.06 -2.91 -0.02 2.34 16 31 H 0.14 2.81 8.06 -2.91 -0.02 2.79 16 32 H 0.12 3.40 8.06 -2.91 -0.02 3.38 16 33 H 0.06 2.17 8.04 -2.38 -0.02 2.15 16 34 H 0.08 2.42 8.04 -2.39 -0.02 2.40 16 35 H 0.10 3.32 7.40 -2.39 -0.02 3.30 16 36 H 0.08 3.48 8.00 -2.39 -0.02 3.46 16 37 H 0.05 1.87 7.13 -2.39 -0.02 1.85 16 38 H 0.05 1.86 5.87 -2.39 -0.01 1.85 16 39 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 40 H 0.07 2.79 6.50 -2.39 -0.02 2.78 16 41 H 0.06 2.33 7.42 -2.39 -0.02 2.31 16 42 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 44 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 45 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 46 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 47 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 48 H 0.05 1.21 6.57 -2.39 -0.02 1.19 16 49 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 50 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 51 H 0.13 2.95 8.06 -2.91 -0.02 2.93 16 Total: -1.00 -65.95 410.15 6.15 -59.81 By element: Atomic # 1 Polarization: 31.89 SS G_CDS: 0.81 Total: 32.70 kcal Atomic # 6 Polarization: -30.75 SS G_CDS: 5.23 Total: -25.52 kcal Atomic # 7 Polarization: -80.77 SS G_CDS: -1.73 Total: -82.50 kcal Atomic # 8 Polarization: -26.35 SS G_CDS: -0.05 Total: -26.40 kcal Atomic # 14 Polarization: 40.02 SS G_CDS: 1.88 Total: 41.91 kcal Total: -65.95 6.15 -59.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000517770039.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.659 kcal (2) G-P(sol) polarization free energy of solvation -65.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds