Wall clock time and date at job start Tue Mar 31 2020 12:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46871 * 2 1 4 4 C 1.53004 * 109.46871 * 179.97438 * 3 2 1 5 5 C 1.50708 * 109.47091 * 180.02562 * 4 3 2 6 6 C 1.38237 * 119.99913 * 90.00266 * 5 4 3 7 7 C 1.38233 * 119.99814 * 179.97438 * 6 5 4 8 8 C 1.38237 * 119.99905 * 0.02562 * 7 6 5 9 9 C 1.50697 * 119.99827 * 179.97438 * 8 7 6 10 10 C 1.50703 * 109.47157 * 89.99618 * 9 8 7 11 11 O 1.21278 * 120.00275 * 4.73679 * 10 9 8 12 12 N 1.34781 * 119.99687 * 185.01044 * 10 9 8 13 13 C 1.46501 * 119.99648 * 174.29766 * 12 10 9 14 14 C 1.50705 * 109.46840 * 90.00215 * 13 12 10 15 15 H 1.08003 * 120.00055 * 359.97438 * 14 13 12 16 16 C 1.37878 * 119.99777 * 179.97438 * 14 13 12 17 17 N 1.31510 * 120.00075 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00056 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47044 * 59.99836 * 18 16 14 20 20 H 1.48495 * 109.47383 * 180.02562 * 18 16 14 21 21 H 1.48507 * 109.47124 * 300.00240 * 18 16 14 22 22 C 1.46497 * 120.00379 * 354.30198 * 12 10 9 23 23 C 1.52997 * 109.47417 * 124.11324 * 22 12 10 24 24 C 1.53002 * 109.47146 * 244.12062 * 22 12 10 25 25 C 1.38238 * 120.00162 * 0.24712 * 8 7 6 26 26 C 1.38235 * 119.99688 * 270.02264 * 5 4 3 27 27 H 1.09006 * 109.46973 * 59.99539 * 1 2 3 28 28 H 1.08994 * 109.46831 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46811 * 299.99865 * 1 2 3 30 30 H 1.08998 * 109.47128 * 240.00551 * 2 1 3 31 31 H 1.08996 * 109.47433 * 120.00289 * 2 1 3 32 32 H 1.09000 * 109.47293 * 60.00430 * 3 2 1 33 33 H 1.08993 * 109.47841 * 299.99802 * 3 2 1 34 34 H 1.08998 * 109.47128 * 60.00551 * 4 3 2 35 35 H 1.09004 * 109.47282 * 300.00028 * 4 3 2 36 36 H 1.07998 * 120.00017 * 359.97438 * 6 5 4 37 37 H 1.07999 * 119.99913 * 179.97438 * 7 6 5 38 38 H 1.09000 * 109.47149 * 329.99701 * 9 8 7 39 39 H 1.08998 * 109.47443 * 209.99885 * 9 8 7 40 40 H 1.09001 * 109.47253 * 210.00179 * 13 12 10 41 41 H 1.09001 * 109.47438 * 330.00167 * 13 12 10 42 42 H 0.97002 * 120.00477 * 179.97438 * 17 16 14 43 43 H 1.09011 * 109.46881 * 4.11396 * 22 12 10 44 44 H 1.09000 * 109.46692 * 55.63129 * 23 22 12 45 45 H 1.08997 * 109.46869 * 175.62374 * 23 22 12 46 46 H 1.08998 * 109.47372 * 295.62850 * 23 22 12 47 47 H 1.09001 * 109.47535 * 64.59006 * 24 22 12 48 48 H 1.08994 * 109.47102 * 184.59523 * 24 22 12 49 49 H 1.09004 * 109.46824 * 304.59218 * 24 22 12 50 50 H 1.08000 * 120.00047 * 179.73036 * 25 8 7 51 51 H 1.08001 * 120.00048 * 359.97438 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0724 2.8634 0.0013 6 6 4.3023 3.5147 1.1987 7 6 4.7636 4.8178 1.1993 8 6 4.9944 5.4698 0.0024 9 6 5.4967 6.8905 0.0030 10 6 7.0037 6.8906 0.0037 11 8 7.6102 5.8439 -0.0831 12 7 7.6775 8.0533 0.1063 13 6 9.1370 8.0454 0.2328 14 6 9.7603 8.0964 -1.1384 15 1 9.1321 8.1307 -2.0162 16 6 11.1326 8.0991 -1.2722 17 7 11.8976 8.0578 -0.2032 18 14 11.9052 8.1615 -2.9717 19 1 11.4746 9.4015 -3.6660 20 1 13.3846 8.1536 -2.8436 21 1 11.4706 6.9782 -3.7569 22 6 6.9505 9.3251 0.0914 23 6 7.2929 10.1232 1.3510 24 6 7.3534 10.1285 -1.1468 25 6 4.7591 4.8204 -1.1951 26 6 4.3028 3.5155 -1.1956 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9564 -0.8899 34 1 3.9337 0.9286 -0.8891 35 1 3.9330 0.9288 0.8909 36 1 4.1215 3.0054 2.1338 37 1 4.9428 5.3267 2.1348 38 1 5.1330 7.4041 0.8930 39 1 5.1338 7.4047 -0.8869 40 1 9.4565 8.9134 0.8096 41 1 9.4527 7.1348 0.7418 42 1 12.8630 8.0593 -0.2973 43 1 5.8782 9.1303 0.0650 44 1 8.3734 10.2511 1.4174 45 1 6.8137 11.1010 1.3030 46 1 6.9359 9.5862 2.2297 47 1 7.0359 9.5971 -2.0440 48 1 6.8754 11.1075 -1.1161 49 1 8.4362 10.2531 -1.1625 50 1 4.9353 5.3312 -2.1301 51 1 4.1232 3.0066 -2.1311 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000522590826.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:59 Heat of formation + Delta-G solvation = -44.084157 kcal Electronic energy + Delta-G solvation = -26368.900788 eV Core-core repulsion = 22845.902530 eV Total energy + Delta-G solvation = -3522.998258 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.76363 -38.72002 -36.18901 -35.72219 -33.22009 -32.70028 -30.80007 -30.73681 -30.24968 -27.82886 -26.75181 -26.25251 -23.83211 -22.58854 -22.56360 -21.42027 -21.19081 -20.41893 -18.00645 -16.62197 -16.43030 -16.02358 -15.97405 -15.19346 -15.14356 -14.74784 -14.28622 -14.24043 -14.05281 -13.46832 -13.30637 -13.30240 -13.19434 -13.10518 -12.62514 -12.60197 -12.32153 -12.08187 -11.70541 -11.68343 -11.55513 -11.43892 -11.36858 -11.29934 -11.14093 -10.92073 -10.84942 -10.82858 -10.67583 -10.65366 -10.49325 -10.33115 -9.96736 -9.51167 -8.91086 -8.69959 -8.38287 -8.25001 -7.59046 -5.99695 -4.02436 1.51018 1.62561 3.33440 3.38289 3.40617 3.50342 3.79050 4.13328 4.48403 4.56359 4.67922 4.84566 4.92881 4.94796 5.09430 5.15234 5.18842 5.21492 5.32157 5.37099 5.43661 5.47525 5.49921 5.56731 5.57650 5.63930 5.65759 5.69792 5.73929 5.76808 5.85351 5.89053 6.03371 6.04173 6.11378 6.16839 6.22893 6.26790 6.30551 6.36948 6.59132 6.61613 6.75831 6.83414 6.99068 7.14783 7.22025 7.50474 7.63053 7.97314 8.30091 8.50746 8.96534 9.17671 9.61272 11.08372 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.017399 B = 0.002629 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.888325 B =10647.302735 C =11497.088732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.113 4.113 4 C -0.079 4.079 5 C -0.090 4.090 6 C -0.117 4.117 7 C -0.105 4.105 8 C -0.056 4.056 9 C -0.106 4.106 10 C 0.506 3.494 11 O -0.531 6.531 12 N -0.595 5.595 13 C 0.247 3.753 14 C -0.516 4.516 15 H 0.057 0.943 16 C 0.059 3.941 17 N -0.896 5.896 18 Si 0.894 3.106 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C 0.134 3.866 23 C -0.163 4.163 24 C -0.161 4.161 25 C -0.101 4.101 26 C -0.116 4.116 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.117 0.883 37 H 0.118 0.882 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.035 0.965 41 H 0.039 0.961 42 H 0.262 0.738 43 H 0.074 0.926 44 H 0.071 0.929 45 H 0.058 0.942 46 H 0.051 0.949 47 H 0.050 0.950 48 H 0.049 0.951 49 H 0.084 0.916 50 H 0.118 0.882 51 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.367 -6.082 2.158 22.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.151 4.151 4 C -0.116 4.116 5 C -0.090 4.090 6 C -0.135 4.135 7 C -0.123 4.123 8 C -0.057 4.057 9 C -0.146 4.146 10 C 0.292 3.708 11 O -0.407 6.407 12 N -0.328 5.328 13 C 0.128 3.872 14 C -0.555 4.555 15 H 0.075 0.925 16 C -0.143 4.143 17 N -0.536 5.536 18 Si 0.722 3.278 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.203 1.203 22 C 0.029 3.971 23 C -0.221 4.221 24 C -0.219 4.219 25 C -0.119 4.119 26 C -0.134 4.134 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.135 0.865 37 H 0.136 0.864 38 H 0.111 0.889 39 H 0.113 0.887 40 H 0.053 0.947 41 H 0.057 0.943 42 H 0.072 0.928 43 H 0.092 0.908 44 H 0.089 0.911 45 H 0.077 0.923 46 H 0.070 0.930 47 H 0.069 0.931 48 H 0.068 0.932 49 H 0.103 0.897 50 H 0.136 0.864 51 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -20.820 -6.634 2.180 21.959 hybrid contribution 0.659 0.199 -0.981 1.199 sum -20.160 -6.435 1.199 21.196 Atomic orbital electron populations 1.21777 0.95991 1.01433 1.01826 1.21559 0.95768 0.97020 1.02012 1.21602 0.94600 0.96486 1.02382 1.20588 0.95344 0.92964 1.02714 1.19773 1.00075 0.95905 0.93276 1.20891 1.00622 0.94756 0.97271 1.20934 0.99079 0.94919 0.97390 1.19356 0.97787 0.95112 0.93427 1.20787 0.94942 0.94752 1.04163 1.20174 0.88484 0.84291 0.77879 1.90699 1.69920 1.31192 1.48914 1.48330 1.09665 1.03888 1.70921 1.19227 0.72535 0.98191 0.97294 1.21399 0.91252 1.50193 0.92658 0.92468 1.24930 0.97172 0.95397 0.96753 1.69917 1.04658 1.50744 1.28255 0.86622 0.78009 0.78551 0.84607 1.20303 1.21289 1.20286 1.20980 0.95382 0.85169 0.95579 1.22164 1.03525 0.99223 0.97172 1.22195 1.04680 0.98094 0.96954 1.20957 0.98566 0.94870 0.97501 1.20909 1.00509 0.94724 0.97303 0.92772 0.92913 0.92785 0.92042 0.92049 0.91898 0.91882 0.91207 0.91226 0.86514 0.86429 0.88875 0.88727 0.94704 0.94334 0.92797 0.90822 0.91055 0.92309 0.92999 0.93113 0.93227 0.89663 0.86357 0.86495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.91 37.16 0.37 -0.62 16 2 C -0.13 -0.90 5.93 -26.73 -0.16 -1.06 16 3 C -0.11 -0.95 5.20 -26.73 -0.14 -1.08 16 4 C -0.08 -0.77 5.34 -27.88 -0.15 -0.92 16 5 C -0.09 -1.14 5.13 -104.62 -0.54 -1.68 16 6 C -0.12 -1.54 9.70 -39.58 -0.38 -1.92 16 7 C -0.11 -1.52 9.70 -39.58 -0.38 -1.91 16 8 C -0.06 -0.87 4.38 -104.62 -0.46 -1.33 16 9 C -0.11 -1.61 4.15 -29.03 -0.12 -1.73 16 10 C 0.51 10.57 7.64 -10.98 -0.08 10.49 16 11 O -0.53 -13.70 15.68 5.56 0.09 -13.61 16 12 N -0.60 -12.45 2.39 -167.46 -0.40 -12.85 16 13 C 0.25 6.38 4.65 -5.19 -0.02 6.35 16 14 C -0.52 -14.43 7.71 -34.44 -0.27 -14.70 16 15 H 0.06 1.60 7.60 -52.48 -0.40 1.21 16 16 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 17 N -0.90 -26.68 13.29 55.43 0.74 -25.95 16 18 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 21 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 22 C 0.13 2.15 3.16 -67.93 -0.21 1.94 16 23 C -0.16 -2.38 9.19 37.16 0.34 -2.04 16 24 C -0.16 -2.64 8.74 37.16 0.32 -2.31 16 25 C -0.10 -1.51 9.70 -39.58 -0.38 -1.89 16 26 C -0.12 -1.56 9.70 -39.58 -0.38 -1.95 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.65 8.09 -51.93 -0.42 0.23 16 35 H 0.07 0.64 8.09 -51.93 -0.42 0.23 16 36 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 37 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 38 H 0.09 1.17 7.66 -51.93 -0.40 0.77 16 39 H 0.09 1.25 7.81 -51.93 -0.41 0.84 16 40 H 0.04 0.91 6.14 -51.93 -0.32 0.59 16 41 H 0.04 1.15 7.50 -51.93 -0.39 0.76 16 42 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 43 H 0.07 0.97 5.79 -51.92 -0.30 0.67 16 44 H 0.07 1.21 6.35 -51.93 -0.33 0.88 16 45 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 46 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 48 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 49 H 0.08 1.68 6.60 -51.93 -0.34 1.34 16 50 H 0.12 1.66 8.06 -52.49 -0.42 1.24 16 51 H 0.12 1.33 8.06 -52.49 -0.42 0.90 16 LS Contribution 409.34 15.07 6.17 6.17 Total: -1.00 -33.03 409.34 -10.38 -43.41 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -9.20 Total: 0.58 kcal Atomic # 6 Polarization: -12.02 SS G_CDS: -2.75 Total: -14.77 kcal Atomic # 7 Polarization: -39.13 SS G_CDS: 0.34 Total: -38.80 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: 0.09 Total: -13.61 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -33.03 -10.38 -43.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000522590826.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.674 kcal (2) G-P(sol) polarization free energy of solvation -33.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds