Wall clock time and date at job start Tue Mar 31 2020 12:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47277 * 2 1 4 4 C 1.53003 * 109.46955 * 240.00042 * 2 1 3 5 5 C 1.50699 * 109.47242 * 294.99821 * 4 2 1 6 6 C 1.38235 * 120.00250 * 269.73121 * 5 4 2 7 7 C 1.38236 * 119.99925 * 179.76680 * 6 5 4 8 8 C 1.38229 * 120.00064 * 0.48063 * 7 6 5 9 9 C 1.50693 * 120.00293 * 179.76943 * 8 7 6 10 10 C 1.50698 * 109.47429 * 270.02347 * 9 8 7 11 11 O 1.21285 * 120.00027 * 354.86316 * 10 9 8 12 12 N 1.34771 * 120.00299 * 174.86396 * 10 9 8 13 13 C 1.46508 * 120.00268 * 185.39712 * 12 10 9 14 14 C 1.50698 * 109.47027 * 89.99770 * 13 12 10 15 15 H 1.08002 * 120.00160 * 0.02562 * 14 13 12 16 16 C 1.37882 * 119.99997 * 180.02562 * 14 13 12 17 17 N 1.31510 * 119.99904 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99835 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.46899 * 90.00226 * 18 16 14 20 20 H 1.48498 * 109.47207 * 209.99738 * 18 16 14 21 21 H 1.48499 * 109.47248 * 330.00281 * 18 16 14 22 22 C 1.46498 * 120.00077 * 5.39349 * 12 10 9 23 23 C 1.53011 * 109.47037 * 124.24399 * 22 12 10 24 24 C 1.52998 * 109.47527 * 244.24431 * 22 12 10 25 25 C 1.38246 * 120.00071 * 359.79382 * 8 7 6 26 26 C 1.38236 * 119.99753 * 359.95073 * 25 8 7 27 27 H 1.08992 * 109.47102 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46604 * 299.99989 * 1 2 3 29 29 H 1.08998 * 109.46798 * 59.99755 * 1 2 3 30 30 H 1.09001 * 109.47301 * 120.00222 * 2 1 3 31 31 H 1.09000 * 109.47294 * 60.00434 * 3 2 1 32 32 H 1.09001 * 109.47175 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.47407 * 299.99872 * 3 2 1 34 34 H 1.09002 * 109.47257 * 55.00299 * 4 2 1 35 35 H 1.09002 * 109.46920 * 175.00038 * 4 2 1 36 36 H 1.08005 * 119.99589 * 359.97438 * 6 5 4 37 37 H 1.08002 * 119.99518 * 180.24919 * 7 6 5 38 38 H 1.09002 * 109.47131 * 30.02259 * 9 8 7 39 39 H 1.09002 * 109.47468 * 150.02257 * 9 8 7 40 40 H 1.08991 * 109.47242 * 210.00065 * 13 12 10 41 41 H 1.09006 * 109.46777 * 330.00105 * 13 12 10 42 42 H 0.96997 * 119.99865 * 180.02562 * 17 16 14 43 43 H 1.09001 * 109.46992 * 4.25038 * 22 12 10 44 44 H 1.09004 * 109.47047 * 55.64460 * 23 22 12 45 45 H 1.08992 * 109.46874 * 175.64494 * 23 22 12 46 46 H 1.09005 * 109.46727 * 295.64721 * 23 22 12 47 47 H 1.08998 * 109.47022 * 64.58412 * 24 22 12 48 48 H 1.09001 * 109.47496 * 184.58453 * 24 22 12 49 49 H 1.09007 * 109.46850 * 304.58538 * 24 22 12 50 50 H 1.07995 * 119.99997 * 179.97438 * 25 8 7 51 51 H 1.07998 * 120.00164 * 180.02562 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6413 -2.1733 -1.1889 6 6 2.4839 -3.0975 -0.6001 7 6 2.1160 -4.4287 -0.5405 8 6 0.9101 -4.8373 -1.0785 9 6 0.5113 -6.2892 -1.0182 10 6 1.0136 -6.9997 -2.2486 11 8 1.5523 -6.3707 -3.1346 12 7 0.8642 -8.3341 -2.3644 13 6 1.4558 -9.0414 -3.5029 14 6 2.8530 -9.4821 -3.1495 15 1 3.2594 -9.2582 -2.1743 16 6 3.6123 -10.1713 -4.0712 17 7 3.1176 -10.4435 -5.2589 18 14 5.3444 -10.7169 -3.6334 19 1 5.2983 -12.0722 -3.0283 20 1 6.1780 -10.7515 -4.8619 21 1 5.9339 -9.7609 -2.6619 22 6 0.1103 -9.0774 -1.3518 23 6 -1.0172 -9.8601 -2.0280 24 6 1.0459 -10.0505 -0.6316 25 6 0.0699 -3.9139 -1.6725 26 6 0.4355 -2.5819 -1.7274 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.6768 1.9564 0.8900 32 1 3.1301 1.4425 -0.0005 33 1 1.6768 1.9564 -0.8900 34 1 1.6054 -0.2617 -2.1370 35 1 3.1263 -0.6443 -1.2952 36 1 3.4281 -2.7790 -0.1836 37 1 2.7726 -5.1501 -0.0768 38 1 0.9459 -6.7488 -0.1304 39 1 -0.5750 -6.3661 -0.9723 40 1 0.8493 -9.9145 -3.7432 41 1 1.4921 -8.3756 -4.3652 42 1 3.6517 -10.9286 -5.9072 43 1 -0.3140 -8.3797 -0.6299 44 1 -0.5996 -10.5017 -2.8040 45 1 -1.5294 -10.4731 -1.2865 46 1 -1.7258 -9.1630 -2.4754 47 1 1.8018 -9.4888 -0.0828 48 1 0.4700 -10.6605 0.0644 49 1 1.5325 -10.6955 -1.3634 50 1 -0.8721 -4.2332 -2.0932 51 1 -0.2210 -1.8604 -2.1910 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000523283254.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:02 Heat of formation + Delta-G solvation = -41.164979 kcal Electronic energy + Delta-G solvation = -26774.576418 eV Core-core repulsion = 23251.704745 eV Total energy + Delta-G solvation = -3522.871673 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.81763 -38.81530 -36.49320 -35.78377 -32.97080 -32.45544 -30.78944 -30.74687 -29.18776 -27.35348 -27.14755 -26.73071 -25.08574 -22.75822 -22.53953 -21.38775 -20.79349 -20.01929 -18.00805 -16.62924 -16.43465 -16.18182 -15.62524 -15.30007 -14.76676 -14.74444 -14.43101 -14.15923 -14.10110 -13.51932 -13.42160 -13.27501 -13.19493 -12.72603 -12.49005 -12.36093 -12.30196 -12.15829 -11.98632 -11.69125 -11.55845 -11.53514 -11.42161 -11.16074 -11.00324 -10.93431 -10.85606 -10.83303 -10.69217 -10.64603 -10.48909 -10.33584 -9.98111 -9.51457 -8.91623 -8.67068 -8.40037 -8.23372 -7.58868 -6.01465 -4.04715 1.52732 1.64175 3.30317 3.37501 3.40509 3.50003 3.80596 4.13556 4.46833 4.64150 4.68994 4.79240 4.97120 5.00099 5.17468 5.21256 5.22371 5.31219 5.31465 5.36834 5.42549 5.48812 5.53898 5.61423 5.64740 5.65361 5.69650 5.74212 5.74296 5.77142 5.90456 5.91110 6.04089 6.11154 6.15001 6.17192 6.23869 6.28788 6.30846 6.36337 6.60699 6.61900 6.77801 6.85240 6.98029 7.15209 7.23385 7.52343 7.62394 7.96115 8.28538 8.50372 8.94782 9.16811 9.59409 11.06611 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.016264 B = 0.002947 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.187987 B = 9499.285142 C =10459.067186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.091 4.091 3 C -0.147 4.147 4 C -0.075 4.075 5 C -0.087 4.087 6 C -0.117 4.117 7 C -0.103 4.103 8 C -0.056 4.056 9 C -0.106 4.106 10 C 0.508 3.492 11 O -0.534 6.534 12 N -0.595 5.595 13 C 0.245 3.755 14 C -0.519 4.519 15 H 0.058 0.942 16 C 0.060 3.940 17 N -0.895 5.895 18 Si 0.894 3.106 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.275 1.275 22 C 0.134 3.866 23 C -0.162 4.162 24 C -0.162 4.162 25 C -0.103 4.103 26 C -0.116 4.116 27 H 0.062 0.938 28 H 0.050 0.950 29 H 0.052 0.948 30 H 0.070 0.930 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.117 0.883 37 H 0.118 0.882 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.035 0.965 41 H 0.042 0.958 42 H 0.262 0.738 43 H 0.074 0.926 44 H 0.071 0.929 45 H 0.058 0.942 46 H 0.051 0.949 47 H 0.050 0.950 48 H 0.049 0.951 49 H 0.084 0.916 50 H 0.117 0.883 51 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.067 15.092 13.073 21.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.109 4.109 3 C -0.205 4.205 4 C -0.112 4.112 5 C -0.087 4.087 6 C -0.135 4.135 7 C -0.121 4.121 8 C -0.057 4.057 9 C -0.146 4.146 10 C 0.294 3.706 11 O -0.411 6.411 12 N -0.328 5.328 13 C 0.126 3.874 14 C -0.558 4.558 15 H 0.076 0.924 16 C -0.142 4.142 17 N -0.534 5.534 18 Si 0.722 3.278 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.199 1.199 22 C 0.029 3.971 23 C -0.220 4.220 24 C -0.220 4.220 25 C -0.121 4.121 26 C -0.134 4.134 27 H 0.081 0.919 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.135 0.865 37 H 0.136 0.864 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.053 0.947 41 H 0.060 0.940 42 H 0.072 0.928 43 H 0.092 0.908 44 H 0.090 0.910 45 H 0.077 0.923 46 H 0.070 0.930 47 H 0.069 0.931 48 H 0.068 0.932 49 H 0.103 0.897 50 H 0.135 0.865 51 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -7.731 15.323 12.400 21.174 hybrid contribution 1.045 -0.578 0.149 1.203 sum -6.686 14.745 12.549 20.484 Atomic orbital electron populations 1.21918 0.95221 1.02340 1.01266 1.21081 0.96125 0.95628 0.98112 1.21856 1.00928 0.96045 1.01651 1.20653 1.00999 0.91441 0.98109 1.19736 0.94842 0.95159 0.98997 1.20905 0.99224 0.92967 1.00382 1.20965 0.95657 0.95785 0.99696 1.19345 0.94773 0.93863 0.97705 1.20782 1.02353 0.92667 0.98823 1.20159 0.80208 0.82479 0.87714 1.90687 1.43454 1.65505 1.41489 1.48315 1.52287 1.06068 1.26122 1.19244 0.92646 0.91922 0.83637 1.21448 0.99086 1.35170 1.00067 0.92414 1.24932 0.98220 0.96202 0.94841 1.69931 1.37412 1.40691 1.05400 0.86559 0.84554 0.78769 0.77929 1.20698 1.21172 1.19944 1.20977 0.91962 0.94023 0.90139 1.22160 0.97812 1.00575 1.01495 1.22205 0.99277 0.99851 1.00651 1.20921 0.99707 0.92933 0.98587 1.20893 0.96426 0.95608 1.00448 0.91916 0.93102 0.92865 0.91163 0.92790 0.92732 0.92718 0.91193 0.91191 0.86524 0.86354 0.88766 0.88858 0.94749 0.94035 0.92816 0.90842 0.91047 0.92281 0.92999 0.93100 0.93236 0.89667 0.86500 0.86534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 8.76 37.16 0.33 -0.92 16 2 C -0.09 -0.78 2.91 -90.62 -0.26 -1.04 16 3 C -0.15 -1.06 9.19 37.16 0.34 -0.72 16 4 C -0.07 -0.74 4.84 -27.88 -0.13 -0.88 16 5 C -0.09 -1.10 4.71 -104.62 -0.49 -1.59 16 6 C -0.12 -1.58 9.70 -39.58 -0.38 -1.96 16 7 C -0.10 -1.56 9.70 -39.59 -0.38 -1.94 16 8 C -0.06 -0.88 4.38 -104.63 -0.46 -1.34 16 9 C -0.11 -1.62 4.16 -29.04 -0.12 -1.74 16 10 C 0.51 10.64 7.65 -10.99 -0.08 10.56 16 11 O -0.53 -13.74 15.60 5.55 0.09 -13.65 16 12 N -0.60 -12.47 2.39 -167.46 -0.40 -12.87 16 13 C 0.24 6.33 4.73 -5.19 -0.02 6.30 16 14 C -0.52 -14.42 7.72 -34.44 -0.27 -14.68 16 15 H 0.06 1.60 7.59 -52.49 -0.40 1.20 16 16 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 17 N -0.90 -26.60 13.29 55.43 0.74 -25.86 16 18 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 21 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 22 C 0.13 2.15 3.12 -67.93 -0.21 1.94 16 23 C -0.16 -2.40 9.19 37.16 0.34 -2.05 16 24 C -0.16 -2.62 8.74 37.16 0.32 -2.30 16 25 C -0.10 -1.49 9.70 -39.58 -0.38 -1.88 16 26 C -0.12 -1.50 7.96 -39.58 -0.32 -1.82 16 27 H 0.06 0.59 6.26 -51.93 -0.33 0.26 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.66 8.09 -51.93 -0.42 0.24 16 35 H 0.07 0.67 8.08 -51.93 -0.42 0.25 16 36 H 0.12 1.35 8.06 -52.48 -0.42 0.92 16 37 H 0.12 1.70 8.06 -52.49 -0.42 1.28 16 38 H 0.09 1.27 7.79 -51.93 -0.40 0.87 16 39 H 0.09 1.17 7.67 -51.93 -0.40 0.77 16 40 H 0.03 0.90 6.13 -51.93 -0.32 0.58 16 41 H 0.04 1.24 7.35 -51.93 -0.38 0.86 16 42 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 43 H 0.07 0.97 5.85 -51.93 -0.30 0.66 16 44 H 0.07 1.22 6.34 -51.93 -0.33 0.89 16 45 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 47 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 48 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 49 H 0.08 1.66 6.60 -51.92 -0.34 1.32 16 50 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 51 H 0.12 1.27 8.04 -52.49 -0.42 0.85 16 LS Contribution 404.47 15.07 6.10 6.10 Total: -1.00 -32.82 404.47 -9.89 -42.71 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -9.10 Total: 1.18 kcal Atomic # 6 Polarization: -12.16 SS G_CDS: -2.29 Total: -14.45 kcal Atomic # 7 Polarization: -39.08 SS G_CDS: 0.34 Total: -38.74 kcal Atomic # 8 Polarization: -13.74 SS G_CDS: 0.09 Total: -13.65 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -32.82 -9.89 -42.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000523283254.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.542 kcal (2) G-P(sol) polarization free energy of solvation -32.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds