Wall clock time and date at job start Tue Mar 31 2020 12:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47277 * 2 1 4 4 C 1.53003 * 109.46955 * 240.00042 * 2 1 3 5 5 C 1.50699 * 109.47242 * 294.99821 * 4 2 1 6 6 C 1.38235 * 120.00250 * 269.73121 * 5 4 2 7 7 C 1.38236 * 119.99925 * 179.76680 * 6 5 4 8 8 C 1.38229 * 120.00064 * 0.48063 * 7 6 5 9 9 C 1.50693 * 120.00293 * 179.76943 * 8 7 6 10 10 C 1.50698 * 109.47429 * 270.02347 * 9 8 7 11 11 O 1.21285 * 120.00027 * 354.86316 * 10 9 8 12 12 N 1.34771 * 120.00299 * 174.86396 * 10 9 8 13 13 C 1.46508 * 120.00268 * 185.39712 * 12 10 9 14 14 C 1.50698 * 109.47027 * 89.99770 * 13 12 10 15 15 H 1.08002 * 120.00160 * 0.02562 * 14 13 12 16 16 C 1.37882 * 119.99997 * 180.02562 * 14 13 12 17 17 N 1.31510 * 119.99904 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99835 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.46899 * 90.00226 * 18 16 14 20 20 H 1.48498 * 109.47207 * 209.99738 * 18 16 14 21 21 H 1.48499 * 109.47248 * 330.00281 * 18 16 14 22 22 C 1.46498 * 120.00077 * 5.39349 * 12 10 9 23 23 C 1.53011 * 109.47037 * 124.24399 * 22 12 10 24 24 C 1.52998 * 109.47527 * 244.24431 * 22 12 10 25 25 C 1.38246 * 120.00071 * 359.79382 * 8 7 6 26 26 C 1.38236 * 119.99753 * 359.95073 * 25 8 7 27 27 H 1.08992 * 109.47102 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46604 * 299.99989 * 1 2 3 29 29 H 1.08998 * 109.46798 * 59.99755 * 1 2 3 30 30 H 1.09001 * 109.47301 * 120.00222 * 2 1 3 31 31 H 1.09000 * 109.47294 * 60.00434 * 3 2 1 32 32 H 1.09001 * 109.47175 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.47407 * 299.99872 * 3 2 1 34 34 H 1.09002 * 109.47257 * 55.00299 * 4 2 1 35 35 H 1.09002 * 109.46920 * 175.00038 * 4 2 1 36 36 H 1.08005 * 119.99589 * 359.97438 * 6 5 4 37 37 H 1.08002 * 119.99518 * 180.24919 * 7 6 5 38 38 H 1.09002 * 109.47131 * 30.02259 * 9 8 7 39 39 H 1.09002 * 109.47468 * 150.02257 * 9 8 7 40 40 H 1.08991 * 109.47242 * 210.00065 * 13 12 10 41 41 H 1.09006 * 109.46777 * 330.00105 * 13 12 10 42 42 H 0.96997 * 119.99865 * 180.02562 * 17 16 14 43 43 H 1.09001 * 109.46992 * 4.25038 * 22 12 10 44 44 H 1.09004 * 109.47047 * 55.64460 * 23 22 12 45 45 H 1.08992 * 109.46874 * 175.64494 * 23 22 12 46 46 H 1.09005 * 109.46727 * 295.64721 * 23 22 12 47 47 H 1.08998 * 109.47022 * 64.58412 * 24 22 12 48 48 H 1.09001 * 109.47496 * 184.58453 * 24 22 12 49 49 H 1.09007 * 109.46850 * 304.58538 * 24 22 12 50 50 H 1.07995 * 119.99997 * 179.97438 * 25 8 7 51 51 H 1.07998 * 120.00164 * 180.02562 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6413 -2.1733 -1.1889 6 6 2.4839 -3.0975 -0.6001 7 6 2.1160 -4.4287 -0.5405 8 6 0.9101 -4.8373 -1.0785 9 6 0.5113 -6.2892 -1.0182 10 6 1.0136 -6.9997 -2.2486 11 8 1.5523 -6.3707 -3.1346 12 7 0.8642 -8.3341 -2.3644 13 6 1.4558 -9.0414 -3.5029 14 6 2.8530 -9.4821 -3.1495 15 1 3.2594 -9.2582 -2.1743 16 6 3.6123 -10.1713 -4.0712 17 7 3.1176 -10.4435 -5.2589 18 14 5.3444 -10.7169 -3.6334 19 1 5.2983 -12.0722 -3.0283 20 1 6.1780 -10.7515 -4.8619 21 1 5.9339 -9.7609 -2.6619 22 6 0.1103 -9.0774 -1.3518 23 6 -1.0172 -9.8601 -2.0280 24 6 1.0459 -10.0505 -0.6316 25 6 0.0699 -3.9139 -1.6725 26 6 0.4355 -2.5819 -1.7274 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.6768 1.9564 0.8900 32 1 3.1301 1.4425 -0.0005 33 1 1.6768 1.9564 -0.8900 34 1 1.6054 -0.2617 -2.1370 35 1 3.1263 -0.6443 -1.2952 36 1 3.4281 -2.7790 -0.1836 37 1 2.7726 -5.1501 -0.0768 38 1 0.9459 -6.7488 -0.1304 39 1 -0.5750 -6.3661 -0.9723 40 1 0.8493 -9.9145 -3.7432 41 1 1.4921 -8.3756 -4.3652 42 1 3.6517 -10.9286 -5.9072 43 1 -0.3140 -8.3797 -0.6299 44 1 -0.5996 -10.5017 -2.8040 45 1 -1.5294 -10.4731 -1.2865 46 1 -1.7258 -9.1630 -2.4754 47 1 1.8018 -9.4888 -0.0828 48 1 0.4700 -10.6605 0.0644 49 1 1.5325 -10.6955 -1.3634 50 1 -0.8721 -4.2332 -2.0932 51 1 -0.2210 -1.8604 -2.1910 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000523283254.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:01 Heat of formation + Delta-G solvation = -57.585671 kcal Electronic energy + Delta-G solvation = -26775.288472 eV Core-core repulsion = 23251.704745 eV Total energy + Delta-G solvation = -3523.583728 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.13887 -40.11689 -37.64149 -37.06173 -34.96659 -33.65791 -32.38442 -31.79592 -30.50380 -28.83788 -27.99461 -27.94416 -26.29461 -24.61842 -23.59268 -22.75734 -21.90097 -20.78516 -19.55229 -18.59820 -18.16398 -17.28961 -16.83045 -16.67854 -16.29548 -15.85349 -15.67024 -15.34272 -15.16251 -14.82375 -14.76184 -14.41990 -14.30052 -14.19621 -13.92659 -13.42707 -13.35017 -13.21972 -13.11921 -13.03740 -12.88367 -12.82132 -12.76186 -12.57599 -12.49162 -12.27907 -12.19493 -12.08916 -11.83021 -11.69052 -11.64225 -11.51175 -11.47515 -11.41931 -10.60629 -10.58593 -9.73511 -9.39454 -9.31421 -8.19470 -6.31373 0.45101 0.57327 1.34544 1.37528 1.47257 1.87994 2.32325 2.45751 2.92399 3.10103 3.72839 3.86871 3.89757 3.93634 4.07129 4.09130 4.11930 4.20608 4.30313 4.38090 4.43153 4.44285 4.56086 4.65626 4.69203 4.80233 4.85721 4.86571 4.88863 4.88993 4.98668 5.02394 5.06441 5.09112 5.10517 5.14042 5.18650 5.24141 5.26867 5.36387 5.45529 5.47359 5.50307 5.57005 5.60881 5.65855 5.74819 5.77837 5.92308 6.12459 6.18508 6.75422 6.87741 7.32330 7.54961 8.87809 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.016264 B = 0.002947 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.187987 B = 9499.285142 C =10459.067186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.087 4.087 3 C -0.145 4.145 4 C -0.073 4.073 5 C -0.086 4.086 6 C -0.128 4.128 7 C -0.122 4.122 8 C -0.080 4.080 9 C -0.091 4.091 10 C 0.499 3.501 11 O -0.594 6.594 12 N -0.599 5.599 13 C 0.262 3.738 14 C -0.524 4.524 15 H 0.054 0.946 16 C 0.004 3.996 17 N -0.931 5.931 18 Si 0.961 3.039 19 H -0.264 1.264 20 H -0.284 1.284 21 H -0.273 1.273 22 C 0.125 3.875 23 C -0.158 4.158 24 C -0.157 4.157 25 C -0.116 4.116 26 C -0.120 4.120 27 H 0.050 0.950 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.132 0.868 37 H 0.118 0.882 38 H 0.117 0.883 39 H 0.127 0.873 40 H 0.026 0.974 41 H -0.011 1.011 42 H 0.265 0.735 43 H 0.117 0.883 44 H 0.037 0.963 45 H 0.096 0.904 46 H 0.057 0.943 47 H 0.047 0.953 48 H 0.089 0.911 49 H 0.044 0.956 50 H 0.126 0.874 51 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.669 16.022 15.601 23.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.106 4.106 3 C -0.202 4.202 4 C -0.111 4.111 5 C -0.086 4.086 6 C -0.145 4.145 7 C -0.140 4.140 8 C -0.081 4.081 9 C -0.130 4.130 10 C 0.288 3.712 11 O -0.475 6.475 12 N -0.331 5.331 13 C 0.141 3.859 14 C -0.563 4.563 15 H 0.073 0.927 16 C -0.194 4.194 17 N -0.572 5.572 18 Si 0.786 3.214 19 H -0.189 1.189 20 H -0.210 1.210 21 H -0.198 1.198 22 C 0.022 3.978 23 C -0.216 4.216 24 C -0.215 4.215 25 C -0.134 4.134 26 C -0.138 4.138 27 H 0.069 0.931 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.150 0.850 37 H 0.136 0.864 38 H 0.135 0.865 39 H 0.145 0.855 40 H 0.044 0.956 41 H 0.007 0.993 42 H 0.073 0.927 43 H 0.134 0.866 44 H 0.056 0.944 45 H 0.115 0.885 46 H 0.076 0.924 47 H 0.066 0.934 48 H 0.107 0.893 49 H 0.063 0.937 50 H 0.144 0.856 51 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -8.365 16.234 14.977 23.619 hybrid contribution 1.184 -0.815 -0.643 1.575 sum -7.181 15.419 14.334 22.244 Atomic orbital electron populations 1.21907 0.94993 1.01759 1.02000 1.21044 0.96281 0.96257 0.96993 1.21831 1.01101 0.95036 1.02246 1.20706 1.01353 0.89835 0.99158 1.20070 0.94381 0.96442 0.97697 1.21172 1.00120 0.92691 1.00557 1.21151 0.95830 0.96655 1.00404 1.19481 0.95468 0.94143 0.98977 1.20740 1.04242 0.91977 0.96032 1.21219 0.79047 0.82176 0.88765 1.90649 1.46105 1.66731 1.43996 1.48362 1.52320 1.06609 1.25782 1.18648 0.92518 0.90612 0.84107 1.21667 0.99983 1.34810 0.99832 0.92735 1.25822 1.02462 0.96376 0.94720 1.70058 1.39074 1.41581 1.06452 0.85510 0.79306 0.78955 0.77642 1.18854 1.20984 1.19782 1.21419 0.91842 0.94769 0.89726 1.22130 0.97449 1.00462 1.01513 1.22145 0.99561 0.99575 1.00228 1.21168 1.00172 0.93564 0.98535 1.21178 0.96906 0.95566 1.00160 0.93100 0.92261 0.92292 0.91725 0.92020 0.92491 0.92315 0.90587 0.90817 0.84970 0.86432 0.86530 0.85499 0.95570 0.99284 0.92660 0.86561 0.94423 0.88504 0.92393 0.93386 0.89272 0.93694 0.85578 0.84584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 8.76 71.98 0.63 -1.56 16 2 C -0.09 -1.32 2.91 -10.79 -0.03 -1.35 16 3 C -0.14 -1.76 9.19 71.98 0.66 -1.10 16 4 C -0.07 -1.33 4.84 29.85 0.14 -1.19 16 5 C -0.09 -2.07 4.71 -19.87 -0.09 -2.16 16 6 C -0.13 -3.37 9.70 22.27 0.22 -3.15 16 7 C -0.12 -3.67 9.70 22.27 0.22 -3.45 16 8 C -0.08 -2.45 4.38 -19.87 -0.09 -2.53 16 9 C -0.09 -2.61 4.16 29.10 0.12 -2.49 16 10 C 0.50 21.12 7.65 87.66 0.67 21.79 16 11 O -0.59 -31.85 15.60 -3.04 -0.05 -31.90 16 12 N -0.60 -25.45 2.39 -802.12 -1.92 -27.37 16 13 C 0.26 14.30 4.73 85.63 0.41 14.70 16 14 C -0.52 -30.15 7.72 25.60 0.20 -29.95 16 15 H 0.05 3.10 7.59 -2.91 -0.02 3.07 16 16 C 0.00 0.26 5.46 84.66 0.46 0.72 16 17 N -0.93 -57.31 13.29 21.45 0.28 -57.03 16 18 Si 0.96 45.60 29.54 68.60 2.03 47.63 16 19 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 20 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 21 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 22 C 0.12 3.80 3.12 44.99 0.14 3.94 16 23 C -0.16 -4.39 9.19 71.99 0.66 -3.73 16 24 C -0.16 -4.82 8.74 71.98 0.63 -4.19 16 25 C -0.12 -3.27 9.70 22.27 0.22 -3.05 16 26 C -0.12 -2.99 7.96 22.27 0.18 -2.81 16 27 H 0.05 0.87 6.26 -2.39 -0.01 0.85 16 28 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.08 1.30 8.09 -2.39 -0.02 1.28 16 35 H 0.07 1.29 8.08 -2.39 -0.02 1.27 16 36 H 0.13 2.94 8.06 -2.91 -0.02 2.92 16 37 H 0.12 3.39 8.06 -2.91 -0.02 3.37 16 38 H 0.12 2.83 7.79 -2.39 -0.02 2.81 16 39 H 0.13 2.78 7.67 -2.39 -0.02 2.76 16 40 H 0.03 1.46 6.13 -2.39 -0.01 1.44 16 41 H -0.01 -0.71 7.35 -2.38 -0.02 -0.72 16 42 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 43 H 0.12 2.59 5.85 -2.39 -0.01 2.58 16 44 H 0.04 1.30 6.34 -2.39 -0.02 1.28 16 45 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 46 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 47 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 48 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 49 H 0.04 1.75 6.60 -2.38 -0.02 1.73 16 50 H 0.13 3.18 8.06 -2.91 -0.02 3.15 16 51 H 0.14 2.75 8.04 -2.91 -0.02 2.72 16 Total: -1.00 -76.03 404.47 6.56 -69.48 By element: Atomic # 1 Polarization: 19.90 SS G_CDS: 0.87 Total: 20.77 kcal Atomic # 6 Polarization: -26.91 SS G_CDS: 5.34 Total: -21.58 kcal Atomic # 7 Polarization: -82.77 SS G_CDS: -1.63 Total: -84.40 kcal Atomic # 8 Polarization: -31.85 SS G_CDS: -0.05 Total: -31.90 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -76.03 6.56 -69.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000523283254.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.890 kcal (2) G-P(sol) polarization free energy of solvation -76.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds