Wall clock time and date at job start Tue Mar 31 2020 11:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99764 * 2 1 4 4 H 1.48504 * 109.47132 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47214 * 300.00435 * 3 2 1 6 6 H 1.48504 * 109.46786 * 60.00668 * 3 2 1 7 7 C 1.37879 * 120.00631 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00487 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99714 * 0.02562 * 7 2 1 10 10 C 1.53111 * 109.52586 * 179.97438 * 9 7 2 11 11 C 1.53032 * 109.28358 * 177.61944 * 10 9 7 12 12 N 1.46848 * 109.52424 * 300.82478 * 11 10 9 13 13 C 1.46905 * 111.00194 * 185.83578 * 12 11 10 14 14 C 1.53000 * 109.46887 * 169.99898 * 13 12 11 15 15 C 1.53001 * 109.46900 * 180.02562 * 14 13 12 16 16 C 1.52994 * 109.47211 * 179.97438 * 15 14 13 17 17 C 1.53001 * 109.47211 * 179.97438 * 16 15 14 18 18 O 1.42899 * 109.47431 * 180.02562 * 17 16 15 19 19 C 1.35892 * 117.00396 * 179.97438 * 18 17 16 20 20 C 1.38736 * 120.05957 * 180.02562 * 19 18 17 21 21 C 1.38147 * 119.94540 * 180.26040 * 20 19 18 22 22 C 1.38270 * 120.05177 * 359.46077 * 21 20 19 23 23 C 1.38259 * 120.11412 * 0.51388 * 22 21 20 24 24 C 1.38146 * 120.05869 * 359.76948 * 23 22 21 25 25 C 1.46851 * 111.19957 * 61.73527 * 12 11 10 26 26 C 1.53030 * 109.52364 * 298.26065 * 25 12 11 27 27 H 0.96995 * 120.00309 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.52183 * 59.86767 * 9 7 2 29 29 H 1.09003 * 109.50215 * 57.68240 * 10 9 7 30 30 H 1.08998 * 109.50538 * 297.56185 * 10 9 7 31 31 H 1.08994 * 109.46670 * 180.80690 * 11 10 9 32 32 H 1.09000 * 109.45041 * 60.83105 * 11 10 9 33 33 H 1.09000 * 109.46848 * 49.99898 * 13 12 11 34 34 H 1.09002 * 109.46867 * 289.99924 * 13 12 11 35 35 H 1.09000 * 109.47376 * 60.00323 * 14 13 12 36 36 H 1.09002 * 109.47388 * 299.99707 * 14 13 12 37 37 H 1.09005 * 109.47207 * 59.99525 * 15 14 13 38 38 H 1.09002 * 109.46720 * 299.99944 * 15 14 13 39 39 H 1.09000 * 109.47219 * 60.00058 * 16 15 14 40 40 H 1.09002 * 109.47235 * 299.99631 * 16 15 14 41 41 H 1.08997 * 109.47364 * 59.99249 * 17 16 15 42 42 H 1.09002 * 109.47172 * 299.99661 * 17 16 15 43 43 H 1.08002 * 120.02291 * 359.97438 * 20 19 18 44 44 H 1.07995 * 119.96712 * 179.72331 * 21 20 19 45 45 H 1.08000 * 119.93853 * 180.24149 * 22 21 20 46 46 H 1.08006 * 119.97187 * 179.74370 * 23 22 21 47 47 H 1.07993 * 120.03340 * 179.97438 * 24 23 22 48 48 H 1.09001 * 109.45892 * 58.27543 * 25 12 11 49 49 H 1.09004 * 109.46308 * 178.24009 * 25 12 11 50 50 H 1.09000 * 109.50619 * 299.23598 * 26 25 12 51 51 H 1.09002 * 109.50198 * 179.11731 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3965 -1.2124 6 1 1.8903 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4992 -0.0017 10 6 2.2451 -3.6638 -0.0027 11 6 1.4754 -4.9852 0.0561 12 7 0.6535 -5.0206 1.2725 13 6 0.0072 -6.3300 1.4332 14 6 -0.6314 -6.4166 2.8209 15 6 -1.3040 -7.7806 2.9885 16 6 -1.9421 -7.8675 4.3763 17 6 -2.6153 -9.2312 4.5437 18 8 -3.2118 -9.3122 5.8397 19 6 -3.8561 -10.4673 6.1513 20 6 -4.4585 -10.6141 7.3925 21 6 -5.1082 -11.7914 7.7088 22 6 -5.1681 -12.8189 6.7854 23 6 -4.5691 -12.6750 5.5477 24 6 -3.9130 -11.5019 5.2286 25 6 -0.3403 -3.9395 1.2737 26 6 0.3754 -2.5870 1.2513 27 1 -0.4850 0.8400 0.0004 28 1 0.6228 -2.5562 -0.8905 29 1 2.8992 -3.5848 0.8657 30 1 2.8430 -3.6312 -0.9135 31 1 2.1806 -5.8161 0.0699 32 1 0.8318 -5.0696 -0.8196 33 1 0.7522 -7.1185 1.3263 34 1 -0.7623 -6.4514 0.6708 35 1 -1.3764 -5.6282 2.9279 36 1 0.1381 -6.2953 3.5833 37 1 -0.5587 -8.5688 2.8816 38 1 -2.0735 -7.9023 2.2261 39 1 -2.6873 -7.0793 4.4836 40 1 -1.1723 -7.7459 5.1384 41 1 -1.8705 -10.0197 4.4362 42 1 -3.3852 -9.3524 3.7817 43 1 -4.4154 -9.8102 8.1124 44 1 -5.5734 -11.9077 8.6764 45 1 -5.6799 -13.7371 7.0332 46 1 -4.6137 -13.4807 4.8297 47 1 -3.4449 -11.3901 4.2619 48 1 -0.9753 -4.0291 0.3923 49 1 -0.9537 -4.0110 2.1719 50 1 1.0000 -2.4910 2.1394 51 1 -0.3627 -1.7850 1.2363 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000527105222.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:36 Heat of formation + Delta-G solvation = -39.133653 kcal Electronic energy + Delta-G solvation = -25191.360834 eV Core-core repulsion = 21668.577246 eV Total energy + Delta-G solvation = -3522.783588 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.41870 -38.42433 -37.84831 -35.72757 -33.76740 -31.85105 -31.33417 -30.39214 -29.76875 -29.29436 -26.37095 -24.78068 -23.18314 -22.62802 -22.22221 -21.72035 -21.15386 -20.41385 -18.58238 -18.51226 -16.68048 -16.45720 -16.35562 -16.06386 -15.33402 -15.23286 -14.80042 -14.42624 -14.27909 -14.03707 -13.78752 -13.64784 -13.33730 -12.89309 -12.78815 -12.55373 -12.39002 -12.30013 -12.06228 -11.92827 -11.56250 -11.54391 -11.20518 -11.06842 -11.01420 -10.90487 -10.85665 -10.66790 -10.47743 -10.31239 -10.17119 -9.94070 -9.38221 -9.38149 -8.92815 -8.65357 -8.55141 -8.27007 -7.71265 -5.94843 -3.99970 0.96247 1.08956 2.84172 3.31907 3.39967 3.42906 3.44189 4.33405 4.43942 4.47488 4.52025 4.58246 4.71312 4.75453 4.87478 4.95598 5.01232 5.01786 5.14971 5.28978 5.35182 5.35705 5.43126 5.58997 5.63325 5.63971 5.78628 5.83721 5.85354 5.90588 5.94771 6.00055 6.03957 6.13130 6.16103 6.22637 6.29804 6.35129 6.38926 6.41854 6.66386 6.67570 6.88928 7.10337 7.11656 7.20348 7.47698 7.65827 7.74550 7.87150 8.08223 8.19200 8.51424 9.04034 9.64375 11.11404 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.032620 B = 0.001599 C = 0.001548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.171239 B =17508.858355 C =18077.973968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.889 3.111 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.509 4.509 8 H 0.055 0.945 9 C 0.047 3.953 10 C -0.107 4.107 11 C 0.061 3.939 12 N -0.537 5.537 13 C 0.055 3.945 14 C -0.115 4.115 15 C -0.113 4.113 16 C -0.118 4.118 17 C 0.059 3.941 18 O -0.315 6.315 19 C 0.133 3.867 20 C -0.155 4.155 21 C -0.081 4.081 22 C -0.163 4.163 23 C -0.081 4.081 24 C -0.211 4.211 25 C 0.055 3.945 26 C -0.104 4.104 27 H 0.258 0.742 28 H 0.020 0.980 29 H 0.056 0.944 30 H 0.049 0.951 31 H 0.056 0.944 32 H 0.022 0.978 33 H 0.065 0.935 34 H 0.025 0.975 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.130 0.870 44 H 0.128 0.872 45 H 0.122 0.878 46 H 0.124 0.876 47 H 0.128 0.872 48 H 0.020 0.980 49 H 0.058 0.942 50 H 0.043 0.957 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.295 -24.841 11.080 28.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.140 4.140 3 Si 0.717 3.283 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.547 4.547 8 H 0.073 0.927 9 C 0.028 3.972 10 C -0.144 4.144 11 C -0.067 4.067 12 N -0.262 5.262 13 C -0.073 4.073 14 C -0.153 4.153 15 C -0.152 4.152 16 C -0.156 4.156 17 C -0.015 4.015 18 O -0.229 6.229 19 C 0.087 3.913 20 C -0.174 4.174 21 C -0.099 4.099 22 C -0.181 4.181 23 C -0.099 4.099 24 C -0.230 4.230 25 C -0.072 4.072 26 C -0.143 4.143 27 H 0.068 0.932 28 H 0.038 0.962 29 H 0.075 0.925 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.040 0.960 33 H 0.084 0.916 34 H 0.043 0.957 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.148 0.852 44 H 0.146 0.854 45 H 0.140 0.860 46 H 0.142 0.858 47 H 0.146 0.854 48 H 0.038 0.962 49 H 0.076 0.924 50 H 0.061 0.939 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -9.088 -24.448 11.570 28.534 hybrid contribution -0.134 0.608 -0.952 1.138 sum -9.222 -23.840 10.618 27.679 Atomic orbital electron populations 1.69886 1.05868 1.26150 1.51272 1.24970 0.94831 0.98998 0.95248 0.86584 0.80203 0.84017 0.77477 1.19828 1.21172 1.21085 1.21257 0.92920 0.90678 1.49870 0.92709 1.18692 0.92729 0.91768 0.93979 1.21677 0.98714 0.93802 1.00243 1.22101 0.95685 0.99208 0.89690 1.61996 1.23750 1.02185 1.38273 1.22054 0.96946 0.92404 0.95906 1.21575 1.00081 0.95891 0.97742 1.21460 0.99785 0.98538 0.95378 1.21562 1.00518 0.95037 0.98450 1.22924 0.96602 0.99497 0.82525 1.86080 1.67187 1.34142 1.35457 1.19079 0.92630 0.85497 0.94046 1.20501 1.02033 0.99445 0.95421 1.20987 0.97240 0.92401 0.99316 1.21070 1.02912 0.99703 0.94459 1.20972 0.95683 0.96626 0.96610 1.21314 1.06202 0.95016 1.00436 1.22316 0.93141 0.93094 0.98624 1.21657 1.00165 0.93086 0.99346 0.93191 0.96234 0.92497 0.93257 0.92568 0.95970 0.91637 0.95717 0.91521 0.90985 0.91749 0.91879 0.90648 0.90598 0.91988 0.92004 0.85171 0.85398 0.85974 0.85839 0.85436 0.96161 0.92399 0.93858 0.89035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.60 11.37 55.43 0.63 -24.97 16 2 C 0.06 1.68 5.31 -17.82 -0.09 1.58 16 3 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.51 -14.13 8.56 -34.44 -0.29 -14.42 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.05 1.18 2.16 -91.65 -0.20 0.98 16 10 C -0.11 -2.27 5.32 -26.66 -0.14 -2.41 16 11 C 0.06 1.11 5.46 -3.84 -0.02 1.09 16 12 N -0.54 -9.60 4.66 -234.67 -1.09 -10.69 16 13 C 0.06 0.77 4.96 -3.82 -0.02 0.75 16 14 C -0.12 -1.38 5.14 -26.73 -0.14 -1.52 16 15 C -0.11 -1.03 5.21 -26.73 -0.14 -1.17 16 16 C -0.12 -1.05 5.58 -26.73 -0.15 -1.20 16 17 C 0.06 0.50 4.74 37.16 0.18 0.68 16 18 O -0.32 -3.35 10.14 -19.40 -0.20 -3.54 16 19 C 0.13 1.32 6.69 -39.21 -0.26 1.06 16 20 C -0.16 -1.38 9.99 -39.43 -0.39 -1.77 16 21 C -0.08 -0.59 10.04 -39.60 -0.40 -0.99 16 22 C -0.16 -1.14 10.04 -39.56 -0.40 -1.54 16 23 C -0.08 -0.60 10.04 -39.61 -0.40 -1.00 16 24 C -0.21 -1.80 9.04 -39.43 -0.36 -2.16 16 25 C 0.06 1.09 5.29 -3.84 -0.02 1.07 16 26 C -0.10 -2.49 5.12 -26.65 -0.14 -2.63 16 27 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 28 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 30 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.06 0.90 8.01 -51.93 -0.42 0.48 16 32 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.84 7.99 -51.93 -0.41 0.42 16 34 H 0.02 0.35 8.12 -51.93 -0.42 -0.08 16 35 H 0.07 0.86 6.43 -51.93 -0.33 0.53 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.06 0.46 7.66 -51.93 -0.40 0.06 16 42 H 0.06 0.47 7.66 -51.93 -0.40 0.07 16 43 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 44 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 45 H 0.12 0.59 8.06 -52.49 -0.42 0.17 16 46 H 0.12 0.65 8.06 -52.48 -0.42 0.22 16 47 H 0.13 0.91 6.30 -52.49 -0.33 0.58 16 48 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.06 1.05 6.21 -51.93 -0.32 0.72 16 50 H 0.04 1.06 8.14 -51.93 -0.42 0.64 16 51 H 0.09 2.42 6.18 -51.93 -0.32 2.10 16 LS Contribution 398.15 15.07 6.00 6.00 Total: -1.00 -29.73 398.15 -12.30 -42.03 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -9.24 Total: -1.67 kcal Atomic # 6 Polarization: -20.20 SS G_CDS: -3.38 Total: -23.59 kcal Atomic # 7 Polarization: -35.20 SS G_CDS: -0.46 Total: -35.66 kcal Atomic # 8 Polarization: -3.35 SS G_CDS: -0.20 Total: -3.54 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -29.73 -12.30 -42.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527105222.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.893 kcal (2) G-P(sol) polarization free energy of solvation -29.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds