Wall clock time and date at job start Tue Mar 31 2020 11:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99764 * 2 1 4 4 H 1.48504 * 109.47132 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47214 * 300.00435 * 3 2 1 6 6 H 1.48504 * 109.46786 * 60.00668 * 3 2 1 7 7 C 1.37879 * 120.00631 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00487 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99714 * 0.02562 * 7 2 1 10 10 C 1.53111 * 109.52586 * 179.97438 * 9 7 2 11 11 C 1.53032 * 109.28358 * 177.61944 * 10 9 7 12 12 N 1.46848 * 109.52424 * 300.82478 * 11 10 9 13 13 C 1.46905 * 111.00194 * 185.83578 * 12 11 10 14 14 C 1.53000 * 109.46887 * 169.99898 * 13 12 11 15 15 C 1.53001 * 109.46900 * 180.02562 * 14 13 12 16 16 C 1.52994 * 109.47211 * 179.97438 * 15 14 13 17 17 C 1.53001 * 109.47211 * 179.97438 * 16 15 14 18 18 O 1.42899 * 109.47431 * 180.02562 * 17 16 15 19 19 C 1.35892 * 117.00396 * 179.97438 * 18 17 16 20 20 C 1.38736 * 120.05957 * 180.02562 * 19 18 17 21 21 C 1.38147 * 119.94540 * 180.26040 * 20 19 18 22 22 C 1.38270 * 120.05177 * 359.46077 * 21 20 19 23 23 C 1.38259 * 120.11412 * 0.51388 * 22 21 20 24 24 C 1.38146 * 120.05869 * 359.76948 * 23 22 21 25 25 C 1.46851 * 111.19957 * 61.73527 * 12 11 10 26 26 C 1.53030 * 109.52364 * 298.26065 * 25 12 11 27 27 H 0.96995 * 120.00309 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.52183 * 59.86767 * 9 7 2 29 29 H 1.09003 * 109.50215 * 57.68240 * 10 9 7 30 30 H 1.08998 * 109.50538 * 297.56185 * 10 9 7 31 31 H 1.08994 * 109.46670 * 180.80690 * 11 10 9 32 32 H 1.09000 * 109.45041 * 60.83105 * 11 10 9 33 33 H 1.09000 * 109.46848 * 49.99898 * 13 12 11 34 34 H 1.09002 * 109.46867 * 289.99924 * 13 12 11 35 35 H 1.09000 * 109.47376 * 60.00323 * 14 13 12 36 36 H 1.09002 * 109.47388 * 299.99707 * 14 13 12 37 37 H 1.09005 * 109.47207 * 59.99525 * 15 14 13 38 38 H 1.09002 * 109.46720 * 299.99944 * 15 14 13 39 39 H 1.09000 * 109.47219 * 60.00058 * 16 15 14 40 40 H 1.09002 * 109.47235 * 299.99631 * 16 15 14 41 41 H 1.08997 * 109.47364 * 59.99249 * 17 16 15 42 42 H 1.09002 * 109.47172 * 299.99661 * 17 16 15 43 43 H 1.08002 * 120.02291 * 359.97438 * 20 19 18 44 44 H 1.07995 * 119.96712 * 179.72331 * 21 20 19 45 45 H 1.08000 * 119.93853 * 180.24149 * 22 21 20 46 46 H 1.08006 * 119.97187 * 179.74370 * 23 22 21 47 47 H 1.07993 * 120.03340 * 179.97438 * 24 23 22 48 48 H 1.09001 * 109.45892 * 58.27543 * 25 12 11 49 49 H 1.09004 * 109.46308 * 178.24009 * 25 12 11 50 50 H 1.09000 * 109.50619 * 299.23598 * 26 25 12 51 51 H 1.09002 * 109.50198 * 179.11731 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3965 -1.2124 6 1 1.8903 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4992 -0.0017 10 6 2.2451 -3.6638 -0.0027 11 6 1.4754 -4.9852 0.0561 12 7 0.6535 -5.0206 1.2725 13 6 0.0072 -6.3300 1.4332 14 6 -0.6314 -6.4166 2.8209 15 6 -1.3040 -7.7806 2.9885 16 6 -1.9421 -7.8675 4.3763 17 6 -2.6153 -9.2312 4.5437 18 8 -3.2118 -9.3122 5.8397 19 6 -3.8561 -10.4673 6.1513 20 6 -4.4585 -10.6141 7.3925 21 6 -5.1082 -11.7914 7.7088 22 6 -5.1681 -12.8189 6.7854 23 6 -4.5691 -12.6750 5.5477 24 6 -3.9130 -11.5019 5.2286 25 6 -0.3403 -3.9395 1.2737 26 6 0.3754 -2.5870 1.2513 27 1 -0.4850 0.8400 0.0004 28 1 0.6228 -2.5562 -0.8905 29 1 2.8992 -3.5848 0.8657 30 1 2.8430 -3.6312 -0.9135 31 1 2.1806 -5.8161 0.0699 32 1 0.8318 -5.0696 -0.8196 33 1 0.7522 -7.1185 1.3263 34 1 -0.7623 -6.4514 0.6708 35 1 -1.3764 -5.6282 2.9279 36 1 0.1381 -6.2953 3.5833 37 1 -0.5587 -8.5688 2.8816 38 1 -2.0735 -7.9023 2.2261 39 1 -2.6873 -7.0793 4.4836 40 1 -1.1723 -7.7459 5.1384 41 1 -1.8705 -10.0197 4.4362 42 1 -3.3852 -9.3524 3.7817 43 1 -4.4154 -9.8102 8.1124 44 1 -5.5734 -11.9077 8.6764 45 1 -5.6799 -13.7371 7.0332 46 1 -4.6137 -13.4807 4.8297 47 1 -3.4449 -11.3901 4.2619 48 1 -0.9753 -4.0291 0.3923 49 1 -0.9537 -4.0110 2.1719 50 1 1.0000 -2.4910 2.1394 51 1 -0.3627 -1.7850 1.2363 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000527105222.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:35 Heat of formation + Delta-G solvation = -53.529924 kcal Electronic energy + Delta-G solvation = -25191.985103 eV Core-core repulsion = 21668.577246 eV Total energy + Delta-G solvation = -3523.407857 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.04126 -39.91734 -38.49250 -36.84349 -35.34319 -33.42469 -31.99181 -31.48332 -31.29018 -30.21961 -27.87461 -26.08207 -24.20883 -23.81237 -23.40751 -22.81325 -21.93584 -21.59073 -20.34727 -19.15765 -18.44604 -17.37613 -17.05446 -16.83994 -16.67893 -16.33039 -16.24682 -15.58584 -15.33656 -15.08967 -14.84014 -14.56259 -14.41586 -14.32363 -14.18932 -14.04257 -13.52160 -13.28336 -13.23791 -12.92929 -12.74558 -12.67858 -12.50889 -12.39592 -12.31720 -12.08651 -11.91725 -11.86965 -11.76343 -11.66688 -11.64060 -11.43422 -11.23231 -10.79216 -10.60772 -10.37218 -9.95115 -9.16704 -9.15286 -8.08155 -6.21582 0.39438 0.49687 1.39560 1.41402 1.52917 2.20391 2.43661 2.85294 3.07232 3.18822 3.82076 3.89649 3.93225 4.00771 4.06709 4.15714 4.22059 4.26961 4.31016 4.34399 4.40923 4.46847 4.51159 4.54981 4.60956 4.61474 4.69496 4.77265 4.79859 4.84670 4.89716 4.95828 4.99127 5.00433 5.09291 5.11676 5.19680 5.25469 5.34229 5.38026 5.41222 5.48592 5.48901 5.57397 5.60875 5.63506 5.88350 6.00778 6.04182 6.32078 6.39172 6.41367 6.47424 6.90376 7.46287 8.96638 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.032620 B = 0.001599 C = 0.001548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.171239 B =17508.858355 C =18077.973968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.011 3.989 3 Si 0.953 3.047 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.533 4.533 8 H 0.051 0.949 9 C 0.042 3.958 10 C -0.100 4.100 11 C 0.066 3.934 12 N -0.545 5.545 13 C 0.056 3.944 14 C -0.111 4.111 15 C -0.103 4.103 16 C -0.114 4.114 17 C 0.060 3.940 18 O -0.337 6.337 19 C 0.107 3.893 20 C -0.175 4.175 21 C -0.085 4.085 22 C -0.166 4.166 23 C -0.087 4.087 24 C -0.221 4.221 25 C 0.069 3.931 26 C -0.096 4.096 27 H 0.260 0.740 28 H -0.014 1.014 29 H 0.051 0.949 30 H 0.053 0.947 31 H 0.089 0.911 32 H 0.019 0.981 33 H 0.087 0.913 34 H 0.028 0.972 35 H 0.053 0.947 36 H 0.066 0.934 37 H 0.080 0.920 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.070 0.930 43 H 0.130 0.870 44 H 0.151 0.849 45 H 0.146 0.854 46 H 0.146 0.854 47 H 0.138 0.862 48 H 0.010 0.990 49 H 0.074 0.926 50 H 0.029 0.971 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.157 -27.156 11.399 30.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.187 4.187 3 Si 0.779 3.221 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.571 4.571 8 H 0.069 0.931 9 C 0.024 3.976 10 C -0.138 4.138 11 C -0.062 4.062 12 N -0.270 5.270 13 C -0.072 4.072 14 C -0.149 4.149 15 C -0.141 4.141 16 C -0.152 4.152 17 C -0.015 4.015 18 O -0.251 6.251 19 C 0.062 3.938 20 C -0.194 4.194 21 C -0.103 4.103 22 C -0.184 4.184 23 C -0.105 4.105 24 C -0.239 4.239 25 C -0.059 4.059 26 C -0.134 4.134 27 H 0.069 0.931 28 H 0.005 0.995 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.107 0.893 32 H 0.037 0.963 33 H 0.105 0.895 34 H 0.047 0.953 35 H 0.071 0.929 36 H 0.084 0.916 37 H 0.099 0.901 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.089 0.911 41 H 0.092 0.908 42 H 0.088 0.912 43 H 0.148 0.852 44 H 0.168 0.832 45 H 0.164 0.836 46 H 0.164 0.836 47 H 0.156 0.844 48 H 0.029 0.971 49 H 0.092 0.908 50 H 0.048 0.952 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.948 -26.783 11.891 30.639 hybrid contribution -0.201 1.293 -1.036 1.669 sum -9.149 -25.490 10.854 29.176 Atomic orbital electron populations 1.70023 1.07167 1.26964 1.51664 1.25750 0.95685 1.02374 0.94872 0.85575 0.79127 0.79803 0.77565 1.19171 1.20649 1.20627 1.21627 0.93002 0.92280 1.50164 0.93100 1.18679 0.93222 0.92735 0.92995 1.21548 0.97983 0.94141 1.00158 1.22042 0.96020 0.98271 0.89836 1.61958 1.23576 1.03491 1.38009 1.22178 0.97543 0.90482 0.96976 1.21521 0.99605 0.97301 0.96432 1.21351 1.00144 0.97087 0.95489 1.21486 1.00128 0.95212 0.98332 1.22959 0.97043 0.99342 0.82141 1.86034 1.67731 1.34923 1.36420 1.19356 0.93644 0.85816 0.94943 1.20738 1.02788 1.00364 0.95485 1.21311 0.96671 0.91819 1.00455 1.21443 1.02388 1.00425 0.94167 1.21325 0.95074 0.96796 0.97336 1.21525 1.06556 0.95139 1.00720 1.22051 0.93068 0.91791 0.98997 1.21421 0.99135 0.94820 0.98040 0.93117 0.99537 0.93056 0.92863 0.89276 0.96257 0.89496 0.95331 0.92863 0.91569 0.90146 0.91093 0.91677 0.91106 0.90819 0.91223 0.85174 0.83178 0.83597 0.83633 0.84386 0.97128 0.90752 0.95176 0.92224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.12 11.37 21.45 0.24 -53.88 16 2 C 0.01 0.65 5.31 84.66 0.45 1.10 16 3 Si 0.95 44.52 29.54 68.60 2.03 46.55 16 4 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 5 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 6 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 7 C -0.53 -30.26 8.56 25.60 0.22 -30.04 16 8 H 0.05 2.85 7.74 -2.91 -0.02 2.83 16 9 C 0.04 2.19 2.16 -11.46 -0.02 2.16 16 10 C -0.10 -4.27 5.32 30.64 0.16 -4.10 16 11 C 0.07 2.30 5.46 86.32 0.47 2.77 16 12 N -0.55 -18.71 4.66 -896.36 -4.17 -22.88 16 13 C 0.06 1.41 4.96 86.30 0.43 1.84 16 14 C -0.11 -2.45 5.14 30.59 0.16 -2.30 16 15 C -0.10 -1.63 5.21 30.59 0.16 -1.47 16 16 C -0.11 -1.91 5.58 30.59 0.17 -1.74 16 17 C 0.06 0.94 4.74 71.98 0.34 1.28 16 18 O -0.34 -7.13 10.14 -92.33 -0.94 -8.06 16 19 C 0.11 2.10 6.69 22.51 0.15 2.25 16 20 C -0.18 -3.08 9.99 22.37 0.22 -2.85 16 21 C -0.08 -1.12 10.04 22.26 0.22 -0.90 16 22 C -0.17 -1.98 10.04 22.28 0.22 -1.76 16 23 C -0.09 -1.13 10.04 22.25 0.22 -0.90 16 24 C -0.22 -3.51 9.04 22.37 0.20 -3.31 16 25 C 0.07 2.72 5.29 86.32 0.46 3.17 16 26 C -0.10 -4.71 5.12 30.65 0.16 -4.55 16 27 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 28 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 29 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.09 2.56 8.01 -2.39 -0.02 2.54 16 32 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.09 1.88 7.99 -2.39 -0.02 1.87 16 34 H 0.03 0.72 8.12 -2.39 -0.02 0.71 16 35 H 0.05 1.32 6.43 -2.39 -0.02 1.30 16 36 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 38 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.07 0.97 7.66 -2.39 -0.02 0.95 16 42 H 0.07 0.97 7.66 -2.39 -0.02 0.95 16 43 H 0.13 2.11 8.06 -2.91 -0.02 2.09 16 44 H 0.15 1.18 8.06 -2.91 -0.02 1.16 16 45 H 0.15 0.98 8.06 -2.91 -0.02 0.96 16 46 H 0.15 1.13 8.06 -2.91 -0.02 1.11 16 47 H 0.14 1.75 6.30 -2.91 -0.02 1.74 16 48 H 0.01 0.43 8.14 -2.39 -0.02 0.42 16 49 H 0.07 2.68 6.21 -2.38 -0.01 2.66 16 50 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 51 H 0.06 3.30 6.18 -2.39 -0.01 3.28 16 Total: -1.00 -65.65 398.15 2.42 -63.23 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: 0.86 Total: 14.38 kcal Atomic # 6 Polarization: -43.73 SS G_CDS: 4.40 Total: -39.33 kcal Atomic # 7 Polarization: -72.83 SS G_CDS: -3.93 Total: -76.76 kcal Atomic # 8 Polarization: -7.13 SS G_CDS: -0.94 Total: -8.06 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -65.65 2.42 -63.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527105222.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.699 kcal (2) G-P(sol) polarization free energy of solvation -65.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds