Wall clock time and date at job start Tue Mar 31 2020 11:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35902 * 116.99965 * 2 1 4 4 C 1.38746 * 120.05522 * 359.97438 * 3 2 1 5 5 C 1.38126 * 119.94247 * 180.02562 * 4 3 2 6 6 C 1.38284 * 120.05876 * 359.97272 * 5 4 3 7 7 C 1.38247 * 120.11057 * 0.05373 * 6 5 4 8 8 C 1.50698 * 119.97360 * 179.97438 * 7 6 5 9 9 H 1.09002 * 110.28604 * 347.28164 * 8 7 6 10 10 C 1.54379 * 110.32451 * 225.04157 * 8 7 6 11 11 N 1.48555 * 104.59819 * 217.25150 * 10 8 7 12 12 C 1.46894 * 111.00377 * 159.03898 * 11 10 8 13 13 C 1.53005 * 109.46808 * 74.58142 * 12 11 10 14 14 C 1.53006 * 109.47134 * 180.02562 * 13 12 11 15 15 C 1.50696 * 109.47402 * 179.97438 * 14 13 12 16 16 H 1.08004 * 119.99657 * 0.02562 * 15 14 13 17 17 C 1.37876 * 119.99909 * 180.02562 * 15 14 13 18 18 N 1.31512 * 120.00468 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99561 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47308 * 60.00031 * 19 17 15 21 21 H 1.48501 * 109.47038 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47170 * 299.99984 * 19 17 15 23 23 C 1.48561 * 104.22130 * 39.48363 * 11 10 8 24 24 C 1.54259 * 110.32345 * 109.40861 * 8 7 6 25 25 C 1.53005 * 110.32106 * 237.79186 * 24 8 7 26 26 C 1.52998 * 110.32585 * 359.97438 * 24 8 7 27 27 C 1.38166 * 120.05266 * 359.67086 * 7 6 5 28 28 H 1.09001 * 109.47125 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46919 * 299.99741 * 1 2 3 30 30 H 1.08997 * 109.47477 * 60.00063 * 1 2 3 31 31 H 1.08004 * 120.03090 * 359.97438 * 4 3 2 32 32 H 1.08004 * 119.97029 * 180.02562 * 5 4 3 33 33 H 1.08003 * 119.94764 * 180.02562 * 6 5 4 34 34 H 1.09006 * 110.41003 * 336.03485 * 10 8 7 35 35 H 1.09000 * 110.41118 * 98.46870 * 10 8 7 36 36 H 1.09002 * 109.47336 * 194.57969 * 12 11 10 37 37 H 1.08998 * 109.47044 * 314.58471 * 12 11 10 38 38 H 1.08994 * 109.47184 * 299.99728 * 13 12 11 39 39 H 1.08998 * 109.47050 * 60.00332 * 13 12 11 40 40 H 1.09000 * 109.47301 * 300.00384 * 14 13 12 41 41 H 1.09006 * 109.46648 * 59.99642 * 14 13 12 42 42 H 0.96996 * 120.00262 * 179.97438 * 18 17 15 43 43 H 1.09002 * 110.41426 * 201.74298 * 23 11 10 44 44 H 1.09000 * 110.51387 * 79.34878 * 23 11 10 45 45 H 1.09007 * 109.46988 * 60.00038 * 25 24 8 46 46 H 1.09003 * 109.47347 * 180.02562 * 25 24 8 47 47 H 1.08998 * 109.47009 * 299.99877 * 25 24 8 48 48 H 1.09005 * 109.46557 * 66.98661 * 26 24 8 49 49 H 1.08998 * 109.47080 * 186.98408 * 26 24 8 50 50 H 1.09000 * 109.47346 * 306.98751 * 26 24 8 51 51 H 1.08005 * 120.02775 * 180.30098 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3752 -0.0005 5 6 1.9209 3.6047 -0.0011 6 6 3.3019 3.6758 -0.0005 7 6 4.0560 2.5171 -0.0005 8 6 5.5608 2.5982 -0.0005 9 1 5.8845 3.6144 -0.2255 10 6 6.1513 1.6056 -1.0249 11 7 7.3840 1.0881 -0.3772 12 6 7.7910 -0.1936 -0.9683 13 6 8.4077 0.0534 -2.3466 14 6 8.8311 -1.2816 -2.9626 15 6 9.4378 -1.0385 -4.3204 16 1 9.5143 -0.0323 -4.7053 17 6 9.8954 -2.1005 -5.0712 18 7 9.8019 -3.3258 -4.6027 19 14 10.6482 -1.7989 -6.7539 20 1 11.8369 -0.9199 -6.6142 21 1 11.0579 -3.0948 -7.3524 22 1 9.6477 -1.1425 -7.6334 23 6 7.0038 0.9198 1.0490 24 6 6.1216 2.1469 1.3639 25 6 6.9646 3.2616 1.9868 26 6 4.9802 1.7544 2.3041 27 6 3.4311 1.2849 0.0058 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 0.2127 2.3203 -0.0014 32 1 1.3340 4.5114 -0.0011 33 1 3.7922 4.6381 -0.0005 34 1 5.4506 0.7921 -1.2134 35 1 6.3971 2.1196 -1.9541 36 1 8.5257 -0.6746 -0.3224 37 1 6.9191 -0.8396 -1.0708 38 1 7.6731 0.5343 -2.9924 39 1 9.2796 0.6994 -2.2440 40 1 9.5655 -1.7631 -2.3169 41 1 7.9588 -1.9273 -3.0651 42 1 10.1234 -4.0730 -5.1310 43 1 7.8916 0.9175 1.6815 44 1 6.4373 -0.0011 1.1872 45 1 6.3458 4.1472 2.1319 46 1 7.3539 2.9284 2.9488 47 1 7.7949 3.5032 1.3233 48 1 4.4901 0.8573 1.9256 49 1 5.3802 1.5576 3.2987 50 1 4.2573 2.5684 2.3576 51 1 4.0206 0.3799 0.0107 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000528626742.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:40 Heat of formation + Delta-G solvation = -25.057769 kcal Electronic energy + Delta-G solvation = -27042.317534 eV Core-core repulsion = 23520.144322 eV Total energy + Delta-G solvation = -3522.173212 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.88238 -39.51028 -37.38511 -35.16713 -33.20164 -32.03667 -31.10806 -30.67810 -28.49249 -27.66823 -27.00682 -26.70575 -24.77953 -23.58277 -22.48730 -21.50316 -20.77318 -19.95927 -18.88761 -17.75920 -16.49675 -16.25552 -16.16077 -15.96214 -15.46012 -15.16248 -14.48797 -14.43256 -14.23009 -13.99474 -13.80854 -13.70491 -13.43187 -13.00805 -12.71216 -12.54404 -12.43536 -12.19662 -12.04360 -11.94377 -11.70712 -11.43094 -11.38372 -11.31431 -11.15005 -10.90979 -10.72576 -10.69731 -10.62408 -10.56756 -10.46142 -10.31487 -9.55781 -9.25147 -9.00564 -8.85917 -8.35172 -8.28700 -8.14467 -5.94132 -3.95935 1.14251 1.29715 3.05905 3.37566 3.41296 3.44344 3.56727 4.17829 4.47190 4.51399 4.59665 4.65618 4.69240 4.82849 4.85846 4.87412 5.02193 5.12770 5.18569 5.26336 5.33960 5.35222 5.39189 5.41501 5.45498 5.59437 5.64310 5.69455 5.77777 5.83431 5.86748 5.95658 5.97693 6.05578 6.10826 6.14065 6.15811 6.22415 6.25486 6.33428 6.39705 6.50425 6.60057 6.74126 6.84845 7.11018 7.21337 7.27744 7.43580 7.74828 7.90633 8.06808 8.50457 9.11158 9.67657 11.17380 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.013099 B = 0.002900 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.982019 B = 9652.942741 C =10747.581767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.317 6.317 3 C 0.127 3.873 4 C -0.216 4.216 5 C -0.080 4.080 6 C -0.155 4.155 7 C -0.021 4.021 8 C -0.049 4.049 9 H 0.090 0.910 10 C 0.039 3.961 11 N -0.507 5.507 12 C 0.045 3.955 13 C -0.101 4.101 14 C 0.022 3.978 15 C -0.518 4.518 16 H 0.054 0.946 17 C 0.056 3.944 18 N -0.897 5.897 19 Si 0.892 3.108 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.277 1.277 23 C 0.038 3.962 24 C -0.057 4.057 25 C -0.132 4.132 26 C -0.143 4.143 27 C -0.143 4.143 28 H 0.099 0.901 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.124 0.876 32 H 0.122 0.878 33 H 0.123 0.877 34 H 0.050 0.950 35 H 0.084 0.916 36 H 0.069 0.931 37 H 0.031 0.969 38 H 0.045 0.955 39 H 0.055 0.945 40 H 0.015 0.985 41 H 0.013 0.987 42 H 0.260 0.740 43 H 0.079 0.921 44 H 0.042 0.958 45 H 0.051 0.949 46 H 0.053 0.947 47 H 0.065 0.935 48 H 0.061 0.939 49 H 0.051 0.949 50 H 0.058 0.942 51 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.566 13.541 15.478 27.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.231 6.231 3 C 0.082 3.918 4 C -0.235 4.235 5 C -0.098 4.098 6 C -0.173 4.173 7 C -0.022 4.022 8 C -0.068 4.068 9 H 0.109 0.891 10 C -0.089 4.089 11 N -0.231 5.231 12 C -0.082 4.082 13 C -0.139 4.139 14 C -0.016 4.016 15 C -0.556 4.556 16 H 0.073 0.927 17 C -0.145 4.145 18 N -0.537 5.537 19 Si 0.719 3.281 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.090 4.090 24 C -0.058 4.058 25 C -0.190 4.190 26 C -0.200 4.200 27 C -0.162 4.162 28 H 0.117 0.883 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.142 0.858 32 H 0.140 0.860 33 H 0.141 0.859 34 H 0.068 0.932 35 H 0.102 0.898 36 H 0.087 0.913 37 H 0.049 0.951 38 H 0.064 0.936 39 H 0.073 0.927 40 H 0.033 0.967 41 H 0.031 0.969 42 H 0.070 0.930 43 H 0.098 0.902 44 H 0.060 0.940 45 H 0.070 0.930 46 H 0.073 0.927 47 H 0.084 0.916 48 H 0.080 0.920 49 H 0.070 0.930 50 H 0.077 0.923 51 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -17.975 13.502 15.362 27.229 hybrid contribution -0.601 -0.476 -0.928 1.204 sum -18.576 13.026 14.434 26.891 Atomic orbital electron populations 1.23036 0.78524 1.03918 1.01177 1.86100 1.21263 1.26998 1.88700 1.18988 0.92228 0.84138 0.96440 1.21174 0.99800 0.92469 1.10017 1.20869 0.94531 0.96824 0.97589 1.20942 0.93612 0.97940 1.04819 1.19533 0.95108 0.92081 0.95450 1.21106 0.89421 1.00940 0.95332 0.89118 1.23274 0.91127 0.97070 0.97458 1.65443 1.29145 1.27035 1.01435 1.22461 0.99090 0.88608 0.98061 1.21573 0.99257 1.00760 0.92313 1.19073 0.96229 0.91091 0.95178 1.21225 1.39370 0.93006 1.01992 0.92744 1.25024 0.96130 0.95199 0.98156 1.69956 1.47427 0.98406 1.37902 0.86667 0.79706 0.77274 0.84403 1.20228 1.21344 1.20280 1.23258 0.98353 0.95950 0.91435 1.21256 0.94926 0.95691 0.93903 1.21823 0.99619 0.97103 1.00417 1.22130 0.97617 1.01690 0.98567 1.20291 0.91133 0.98495 1.06235 0.88272 0.92808 0.92688 0.85804 0.85984 0.85948 0.93183 0.89794 0.91276 0.95056 0.93631 0.92653 0.96677 0.96893 0.93027 0.90225 0.93980 0.92969 0.92746 0.91611 0.92006 0.92959 0.92344 0.85269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.20 16 2 O -0.32 -3.65 10.50 -19.43 -0.20 -3.85 16 3 C 0.13 1.47 6.69 -39.22 -0.26 1.21 16 4 C -0.22 -2.09 9.04 -39.43 -0.36 -2.45 16 5 C -0.08 -0.73 10.04 -39.61 -0.40 -1.12 16 6 C -0.15 -1.52 9.57 -39.56 -0.38 -1.90 16 7 C -0.02 -0.24 3.23 -104.65 -0.34 -0.57 16 8 C -0.05 -0.56 2.93 -90.39 -0.26 -0.83 16 9 H 0.09 0.99 7.54 -51.93 -0.39 0.59 16 10 C 0.04 0.55 5.32 -2.19 -0.01 0.54 16 11 N -0.51 -7.81 5.34 -229.97 -1.23 -9.04 16 12 C 0.05 0.82 4.83 -3.82 -0.02 0.80 16 13 C -0.10 -2.18 5.27 -26.73 -0.14 -2.32 16 14 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 15 C -0.52 -15.11 9.11 -34.44 -0.31 -15.42 16 16 H 0.05 1.55 7.74 -52.48 -0.41 1.14 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 18 N -0.90 -27.60 13.29 55.43 0.74 -26.86 16 19 Si 0.89 22.16 29.54 -169.99 -5.02 17.14 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 C 0.04 0.49 5.55 -2.18 -0.01 0.48 16 24 C -0.06 -0.62 1.02 -153.13 -0.16 -0.78 16 25 C -0.13 -1.29 8.23 37.16 0.31 -0.98 16 26 C -0.14 -1.45 7.20 37.16 0.27 -1.18 16 27 C -0.14 -1.74 6.42 -39.43 -0.25 -1.99 16 28 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.05 0.31 7.66 -51.93 -0.40 -0.08 16 30 H 0.05 0.34 7.66 -51.93 -0.40 -0.05 16 31 H 0.12 0.93 6.30 -52.48 -0.33 0.60 16 32 H 0.12 0.81 8.06 -52.48 -0.42 0.39 16 33 H 0.12 1.00 8.00 -52.48 -0.42 0.58 16 34 H 0.05 0.75 5.70 -51.93 -0.30 0.45 16 35 H 0.08 1.25 7.85 -51.93 -0.41 0.84 16 36 H 0.07 1.25 8.08 -51.93 -0.42 0.83 16 37 H 0.03 0.57 7.77 -51.93 -0.40 0.17 16 38 H 0.04 0.98 7.47 -51.93 -0.39 0.59 16 39 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.01 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 43 H 0.08 1.00 7.86 -51.93 -0.41 0.59 16 44 H 0.04 0.55 7.57 -51.93 -0.39 0.16 16 45 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.06 0.68 5.61 -51.93 -0.29 0.39 16 49 H 0.05 0.48 8.13 -51.93 -0.42 0.06 16 50 H 0.06 0.59 7.08 -51.93 -0.37 0.22 16 51 H 0.13 1.69 6.52 -52.48 -0.34 1.35 16 LS Contribution 392.57 15.07 5.92 5.92 Total: -1.00 -31.75 392.57 -10.38 -42.12 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -9.00 Total: -2.10 kcal Atomic # 6 Polarization: -21.76 SS G_CDS: -1.57 Total: -23.33 kcal Atomic # 7 Polarization: -35.40 SS G_CDS: -0.49 Total: -35.90 kcal Atomic # 8 Polarization: -3.65 SS G_CDS: -0.20 Total: -3.85 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.75 -10.38 -42.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528626742.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.067 kcal (2) G-P(sol) polarization free energy of solvation -31.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds