Wall clock time and date at job start Tue Mar 31 2020 11:48:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35902 * 116.99965 * 2 1 4 4 C 1.38746 * 120.05522 * 359.97438 * 3 2 1 5 5 C 1.38126 * 119.94247 * 180.02562 * 4 3 2 6 6 C 1.38284 * 120.05876 * 359.97272 * 5 4 3 7 7 C 1.38247 * 120.11057 * 0.05373 * 6 5 4 8 8 C 1.50698 * 119.97360 * 179.97438 * 7 6 5 9 9 H 1.09002 * 110.28604 * 347.28164 * 8 7 6 10 10 C 1.54379 * 110.32451 * 225.04157 * 8 7 6 11 11 N 1.48555 * 104.59819 * 217.25150 * 10 8 7 12 12 C 1.46894 * 111.00377 * 159.03898 * 11 10 8 13 13 C 1.53005 * 109.46808 * 74.58142 * 12 11 10 14 14 C 1.53006 * 109.47134 * 180.02562 * 13 12 11 15 15 C 1.50696 * 109.47402 * 179.97438 * 14 13 12 16 16 H 1.08004 * 119.99657 * 0.02562 * 15 14 13 17 17 C 1.37876 * 119.99909 * 180.02562 * 15 14 13 18 18 N 1.31512 * 120.00468 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99561 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47308 * 60.00031 * 19 17 15 21 21 H 1.48501 * 109.47038 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47170 * 299.99984 * 19 17 15 23 23 C 1.48561 * 104.22130 * 39.48363 * 11 10 8 24 24 C 1.54259 * 110.32345 * 109.40861 * 8 7 6 25 25 C 1.53005 * 110.32106 * 237.79186 * 24 8 7 26 26 C 1.52998 * 110.32585 * 359.97438 * 24 8 7 27 27 C 1.38166 * 120.05266 * 359.67086 * 7 6 5 28 28 H 1.09001 * 109.47125 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46919 * 299.99741 * 1 2 3 30 30 H 1.08997 * 109.47477 * 60.00063 * 1 2 3 31 31 H 1.08004 * 120.03090 * 359.97438 * 4 3 2 32 32 H 1.08004 * 119.97029 * 180.02562 * 5 4 3 33 33 H 1.08003 * 119.94764 * 180.02562 * 6 5 4 34 34 H 1.09006 * 110.41003 * 336.03485 * 10 8 7 35 35 H 1.09000 * 110.41118 * 98.46870 * 10 8 7 36 36 H 1.09002 * 109.47336 * 194.57969 * 12 11 10 37 37 H 1.08998 * 109.47044 * 314.58471 * 12 11 10 38 38 H 1.08994 * 109.47184 * 299.99728 * 13 12 11 39 39 H 1.08998 * 109.47050 * 60.00332 * 13 12 11 40 40 H 1.09000 * 109.47301 * 300.00384 * 14 13 12 41 41 H 1.09006 * 109.46648 * 59.99642 * 14 13 12 42 42 H 0.96996 * 120.00262 * 179.97438 * 18 17 15 43 43 H 1.09002 * 110.41426 * 201.74298 * 23 11 10 44 44 H 1.09000 * 110.51387 * 79.34878 * 23 11 10 45 45 H 1.09007 * 109.46988 * 60.00038 * 25 24 8 46 46 H 1.09003 * 109.47347 * 180.02562 * 25 24 8 47 47 H 1.08998 * 109.47009 * 299.99877 * 25 24 8 48 48 H 1.09005 * 109.46557 * 66.98661 * 26 24 8 49 49 H 1.08998 * 109.47080 * 186.98408 * 26 24 8 50 50 H 1.09000 * 109.47346 * 306.98751 * 26 24 8 51 51 H 1.08005 * 120.02775 * 180.30098 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3752 -0.0005 5 6 1.9209 3.6047 -0.0011 6 6 3.3019 3.6758 -0.0005 7 6 4.0560 2.5171 -0.0005 8 6 5.5608 2.5982 -0.0005 9 1 5.8845 3.6144 -0.2255 10 6 6.1513 1.6056 -1.0249 11 7 7.3840 1.0881 -0.3772 12 6 7.7910 -0.1936 -0.9683 13 6 8.4077 0.0534 -2.3466 14 6 8.8311 -1.2816 -2.9626 15 6 9.4378 -1.0385 -4.3204 16 1 9.5143 -0.0323 -4.7053 17 6 9.8954 -2.1005 -5.0712 18 7 9.8019 -3.3258 -4.6027 19 14 10.6482 -1.7989 -6.7539 20 1 11.8369 -0.9199 -6.6142 21 1 11.0579 -3.0948 -7.3524 22 1 9.6477 -1.1425 -7.6334 23 6 7.0038 0.9198 1.0490 24 6 6.1216 2.1469 1.3639 25 6 6.9646 3.2616 1.9868 26 6 4.9802 1.7544 2.3041 27 6 3.4311 1.2849 0.0058 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 0.2127 2.3203 -0.0014 32 1 1.3340 4.5114 -0.0011 33 1 3.7922 4.6381 -0.0005 34 1 5.4506 0.7921 -1.2134 35 1 6.3971 2.1196 -1.9541 36 1 8.5257 -0.6746 -0.3224 37 1 6.9191 -0.8396 -1.0708 38 1 7.6731 0.5343 -2.9924 39 1 9.2796 0.6994 -2.2440 40 1 9.5655 -1.7631 -2.3169 41 1 7.9588 -1.9273 -3.0651 42 1 10.1234 -4.0730 -5.1310 43 1 7.8916 0.9175 1.6815 44 1 6.4373 -0.0011 1.1872 45 1 6.3458 4.1472 2.1319 46 1 7.3539 2.9284 2.9488 47 1 7.7949 3.5032 1.3233 48 1 4.4901 0.8573 1.9256 49 1 5.3802 1.5576 3.2987 50 1 4.2573 2.5684 2.3576 51 1 4.0206 0.3799 0.0107 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528626742.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:39 Heat of formation + Delta-G solvation = -42.840711 kcal Electronic energy + Delta-G solvation = -27043.088661 eV Core-core repulsion = 23520.144322 eV Total energy + Delta-G solvation = -3522.944338 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.76326 -40.40436 -38.27403 -36.62512 -35.08153 -32.95211 -32.85761 -31.45608 -29.61718 -28.44199 -28.33222 -27.66321 -26.12582 -24.92655 -23.52062 -22.75644 -21.88446 -21.54170 -19.83254 -18.60218 -18.45568 -17.29584 -16.93383 -16.73236 -16.63710 -16.46932 -16.25021 -15.75981 -15.14258 -15.07771 -14.82804 -14.61059 -14.42572 -14.28128 -13.90298 -13.82946 -13.70737 -13.39141 -13.11730 -13.01087 -12.76292 -12.68150 -12.65161 -12.51629 -12.33849 -12.23440 -12.17989 -12.00923 -11.83176 -11.58870 -11.55804 -11.45053 -11.35676 -11.30227 -11.03711 -10.55892 -9.68356 -9.42984 -9.11917 -8.20771 -6.32258 0.36031 0.51838 1.38820 1.42692 1.50591 2.38175 2.40431 2.78147 3.00664 3.11955 3.51382 3.71105 3.75321 3.90341 4.05452 4.13020 4.19823 4.26597 4.28864 4.37024 4.37338 4.38152 4.45923 4.49256 4.55467 4.63887 4.70144 4.70527 4.71635 4.78709 4.84877 4.89267 4.91216 5.01557 5.05852 5.07343 5.13981 5.16037 5.23564 5.28512 5.35214 5.36890 5.49670 5.50474 5.53087 5.70332 5.71245 5.83941 5.84977 5.95085 6.03500 6.26174 6.48138 6.84013 7.36869 8.91185 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.013099 B = 0.002900 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.982019 B = 9652.942741 C =10747.581767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.345 6.345 3 C 0.110 3.890 4 C -0.215 4.215 5 C -0.077 4.077 6 C -0.156 4.156 7 C -0.028 4.028 8 C -0.040 4.040 9 H 0.103 0.897 10 C 0.036 3.964 11 N -0.511 5.511 12 C 0.058 3.942 13 C -0.084 4.084 14 C 0.027 3.973 15 C -0.544 4.544 16 H 0.059 0.941 17 C -0.001 4.001 18 N -0.934 5.934 19 Si 0.967 3.033 20 H -0.265 1.265 21 H -0.281 1.281 22 H -0.267 1.267 23 C 0.036 3.964 24 C -0.050 4.050 25 C -0.128 4.128 26 C -0.135 4.135 27 C -0.162 4.162 28 H 0.112 0.888 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.147 0.853 32 H 0.153 0.847 33 H 0.143 0.857 34 H 0.036 0.964 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.022 0.978 38 H 0.044 0.956 39 H 0.053 0.947 40 H -0.008 1.008 41 H -0.013 1.013 42 H 0.264 0.736 43 H 0.086 0.914 44 H 0.035 0.965 45 H 0.068 0.932 46 H 0.063 0.937 47 H 0.055 0.945 48 H 0.047 0.953 49 H 0.062 0.938 50 H 0.063 0.937 51 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.620 16.146 15.733 29.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.260 6.260 3 C 0.065 3.935 4 C -0.234 4.234 5 C -0.095 4.095 6 C -0.175 4.175 7 C -0.029 4.029 8 C -0.059 4.059 9 H 0.121 0.879 10 C -0.092 4.092 11 N -0.234 5.234 12 C -0.071 4.071 13 C -0.122 4.122 14 C -0.011 4.011 15 C -0.582 4.582 16 H 0.077 0.923 17 C -0.199 4.199 18 N -0.575 5.575 19 Si 0.791 3.209 20 H -0.190 1.190 21 H -0.207 1.207 22 H -0.192 1.192 23 C -0.092 4.092 24 C -0.051 4.051 25 C -0.185 4.185 26 C -0.192 4.192 27 C -0.180 4.180 28 H 0.130 0.870 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.164 0.836 32 H 0.171 0.829 33 H 0.161 0.839 34 H 0.054 0.946 35 H 0.093 0.907 36 H 0.086 0.914 37 H 0.040 0.960 38 H 0.063 0.937 39 H 0.072 0.928 40 H 0.010 0.990 41 H 0.005 0.995 42 H 0.073 0.927 43 H 0.104 0.896 44 H 0.053 0.947 45 H 0.087 0.913 46 H 0.082 0.918 47 H 0.074 0.926 48 H 0.066 0.934 49 H 0.081 0.919 50 H 0.082 0.918 51 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -19.041 16.122 15.632 29.442 hybrid contribution -0.346 -1.334 -0.985 1.694 sum -19.388 14.788 14.647 28.445 Atomic orbital electron populations 1.23303 0.76496 1.05280 1.02315 1.86060 1.23531 1.27511 1.88867 1.19182 0.92254 0.84954 0.97107 1.21469 1.00941 0.91970 1.08985 1.21253 0.94499 0.97685 0.96038 1.21208 0.94129 0.98093 1.04025 1.19489 0.94739 0.92309 0.96316 1.21046 0.89870 1.00434 0.94561 0.87922 1.23282 0.90445 0.97334 0.98101 1.65381 1.30165 1.24962 1.02872 1.22173 0.98520 0.90028 0.96345 1.21301 0.99214 0.97696 0.93985 1.18963 0.94392 0.93024 0.94703 1.21656 1.39938 0.93465 1.03166 0.92283 1.26012 0.96403 0.94776 1.02711 1.70094 1.48181 0.99438 1.39750 0.85479 0.79088 0.77560 0.78803 1.19020 1.20653 1.19169 1.23352 0.99051 0.97003 0.89761 1.21231 0.94891 0.95042 0.93936 1.21793 0.99246 0.97085 1.00418 1.22039 0.97245 1.01235 0.98681 1.20233 0.91691 0.98182 1.07932 0.86989 0.91303 0.91769 0.83570 0.82938 0.83912 0.94588 0.90711 0.91361 0.95991 0.93726 0.92779 0.98952 0.99498 0.92723 0.89587 0.94688 0.91309 0.91842 0.92604 0.93434 0.91927 0.91770 0.87615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 113.37 1.11 1.38 16 2 O -0.35 -8.06 10.50 -92.45 -0.97 -9.03 16 3 C 0.11 2.53 6.69 22.51 0.15 2.68 16 4 C -0.22 -3.73 9.04 22.36 0.20 -3.53 16 5 C -0.08 -1.17 10.04 22.25 0.22 -0.94 16 6 C -0.16 -2.68 9.57 22.28 0.21 -2.47 16 7 C -0.03 -0.60 3.23 -19.88 -0.06 -0.67 16 8 C -0.04 -0.89 2.93 -10.65 -0.03 -0.93 16 9 H 0.10 2.04 7.54 -2.39 -0.02 2.02 16 10 C 0.04 1.06 5.32 86.45 0.46 1.52 16 11 N -0.51 -16.03 5.34 -881.50 -4.70 -20.74 16 12 C 0.06 2.18 4.83 86.31 0.42 2.60 16 13 C -0.08 -3.76 5.27 30.60 0.16 -3.60 16 14 C 0.03 1.50 4.97 29.85 0.15 1.65 16 15 C -0.54 -32.46 9.11 25.60 0.23 -32.23 16 16 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 17 C 0.00 -0.09 5.46 84.65 0.46 0.38 16 18 N -0.93 -58.72 13.29 21.45 0.28 -58.44 16 19 Si 0.97 45.60 29.54 68.60 2.03 47.62 16 20 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 21 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 22 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 23 C 0.04 0.94 5.55 86.45 0.48 1.42 16 24 C -0.05 -1.04 1.02 -51.29 -0.05 -1.10 16 25 C -0.13 -2.21 8.23 71.98 0.59 -1.62 16 26 C -0.13 -2.59 7.20 71.98 0.52 -2.07 16 27 C -0.16 -4.03 6.42 22.37 0.14 -3.89 16 28 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.07 0.69 7.66 -2.39 -0.02 0.67 16 30 H 0.06 0.71 7.66 -2.39 -0.02 0.70 16 31 H 0.15 1.78 6.30 -2.91 -0.02 1.76 16 32 H 0.15 1.37 8.06 -2.91 -0.02 1.34 16 33 H 0.14 1.83 8.00 -2.91 -0.02 1.81 16 34 H 0.04 1.15 5.70 -2.38 -0.01 1.14 16 35 H 0.07 2.28 7.85 -2.39 -0.02 2.26 16 36 H 0.07 2.57 8.08 -2.39 -0.02 2.55 16 37 H 0.02 0.86 7.77 -2.39 -0.02 0.84 16 38 H 0.04 1.98 7.47 -2.39 -0.02 1.96 16 39 H 0.05 2.42 8.14 -2.39 -0.02 2.40 16 40 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 41 H -0.01 -0.81 8.14 -2.38 -0.02 -0.82 16 42 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 43 H 0.09 2.11 7.86 -2.39 -0.02 2.10 16 44 H 0.03 0.96 7.57 -2.39 -0.02 0.94 16 45 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 46 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 47 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 48 H 0.05 1.06 5.61 -2.38 -0.01 1.05 16 49 H 0.06 1.06 8.13 -2.39 -0.02 1.04 16 50 H 0.06 1.17 7.08 -2.39 -0.02 1.15 16 51 H 0.11 3.04 6.52 -2.91 -0.02 3.02 16 Total: -1.00 -70.04 392.57 2.88 -67.16 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: 0.88 Total: 14.84 kcal Atomic # 6 Polarization: -46.79 SS G_CDS: 5.37 Total: -41.42 kcal Atomic # 7 Polarization: -74.75 SS G_CDS: -4.42 Total: -79.17 kcal Atomic # 8 Polarization: -8.06 SS G_CDS: -0.97 Total: -9.03 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.62 kcal Total: -70.04 2.88 -67.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528626742.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.315 kcal (2) G-P(sol) polarization free energy of solvation -70.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds