Wall clock time and date at job start Tue Mar 31 2020 11:48:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35897 * 116.99870 * 2 1 4 4 C 1.38752 * 120.05935 * 0.02562 * 3 2 1 5 5 C 1.38119 * 119.94772 * 180.02562 * 4 3 2 6 6 C 1.38292 * 120.05285 * 0.02562 * 5 4 3 7 7 C 1.38245 * 120.10969 * 359.95925 * 6 5 4 8 8 C 1.50708 * 119.96861 * 180.02562 * 7 6 5 9 9 H 1.09000 * 110.28252 * 193.44657 * 8 7 6 10 10 C 1.54381 * 110.32421 * 315.57104 * 8 7 6 11 11 N 1.48554 * 104.59447 * 142.84921 * 10 8 7 12 12 C 1.46902 * 111.00332 * 200.95885 * 11 10 8 13 13 C 1.52996 * 109.46945 * 290.13202 * 12 11 10 14 14 C 1.53002 * 109.46739 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.47337 * 180.02562 * 14 13 12 16 16 H 1.08003 * 119.99803 * 359.97438 * 15 14 13 17 17 C 1.37875 * 120.00186 * 180.02562 * 15 14 13 18 18 N 1.31513 * 119.99950 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99867 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47469 * 89.99740 * 19 17 15 21 21 H 1.48500 * 109.46958 * 209.99657 * 19 17 15 22 22 H 1.48501 * 109.47130 * 329.99497 * 19 17 15 23 23 C 1.48560 * 104.22590 * 320.52410 * 11 10 8 24 24 C 1.54256 * 110.41315 * 71.26112 * 8 7 6 25 25 C 1.53001 * 110.32065 * 359.95705 * 24 8 7 26 26 C 1.52999 * 110.32507 * 122.16149 * 24 8 7 27 27 C 1.38157 * 120.05633 * 0.27565 * 7 6 5 28 28 H 1.08998 * 109.47328 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47184 * 300.00365 * 1 2 3 30 30 H 1.09005 * 109.47006 * 59.99842 * 1 2 3 31 31 H 1.08003 * 120.02807 * 0.03380 * 4 3 2 32 32 H 1.07992 * 119.97532 * 179.97438 * 5 4 3 33 33 H 1.07998 * 119.94469 * 179.97438 * 6 5 4 34 34 H 1.08997 * 110.41371 * 261.63426 * 10 8 7 35 35 H 1.09005 * 110.40824 * 23.95666 * 10 8 7 36 36 H 1.08999 * 109.46509 * 50.13084 * 12 11 10 37 37 H 1.08995 * 109.47023 * 170.13008 * 12 11 10 38 38 H 1.08999 * 109.47420 * 299.99324 * 13 12 11 39 39 H 1.08995 * 109.47419 * 60.00048 * 13 12 11 40 40 H 1.08997 * 109.47381 * 299.99862 * 14 13 12 41 41 H 1.09003 * 109.47469 * 59.99871 * 14 13 12 42 42 H 0.97008 * 119.99461 * 180.02562 * 18 17 15 43 43 H 1.08995 * 110.41495 * 158.25790 * 23 11 10 44 44 H 1.09006 * 110.40834 * 280.58288 * 23 11 10 45 45 H 1.09002 * 109.47513 * 53.41459 * 25 24 8 46 46 H 1.09011 * 109.47129 * 173.41458 * 25 24 8 47 47 H 1.09002 * 109.47271 * 293.40879 * 25 24 8 48 48 H 1.08995 * 109.46942 * 59.99956 * 26 24 8 49 49 H 1.08998 * 109.47148 * 180.02562 * 26 24 8 50 50 H 1.09010 * 109.47180 * 300.00437 * 26 24 8 51 51 H 1.08007 * 120.02657 * 179.74959 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2915 2.3753 0.0005 5 6 1.9209 3.6047 0.0000 6 6 3.3020 3.6757 -0.0016 7 6 4.0560 2.5170 -0.0018 8 6 5.5609 2.5981 -0.0030 9 1 5.9915 1.6254 -0.2408 10 6 6.0399 3.6589 -1.0171 11 7 7.2123 4.2973 -0.3653 12 6 7.4794 5.6215 -0.9426 13 6 8.0058 5.4588 -2.3699 14 6 8.2834 6.8380 -2.9713 15 6 8.8013 6.6779 -4.3775 16 1 8.9210 5.6910 -4.7998 17 6 9.1234 7.7911 -5.1244 18 7 8.9782 8.9927 -4.6100 19 14 9.7661 7.5925 -6.8671 20 1 8.6256 7.5908 -7.8182 21 1 10.6780 8.7193 -7.1898 22 1 10.5057 6.3096 -6.9788 23 6 6.8201 4.4085 1.0633 24 6 6.0742 3.0912 1.3655 25 6 4.8999 3.3504 2.3115 26 6 7.0323 2.0656 1.9747 27 6 3.4311 1.2848 -0.0062 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 0.2128 2.3204 0.0015 32 1 1.3341 4.5113 0.0000 33 1 3.7923 4.6380 -0.0024 34 1 6.3366 3.1842 -1.9523 35 1 5.2556 4.3943 -1.1970 36 1 6.5577 6.2031 -0.9593 37 1 8.2242 6.1382 -0.3373 38 1 8.9275 4.8772 -2.3532 39 1 7.2611 4.9421 -2.9752 40 1 7.3615 7.4193 -2.9882 41 1 9.0280 7.3551 -2.3662 42 1 9.2045 9.7759 -5.1358 43 1 7.7043 4.4981 1.6944 44 1 6.1604 5.2636 1.2109 45 1 4.2712 2.4614 2.3624 46 1 5.2794 3.5845 3.3062 47 1 4.3125 4.1901 1.9399 48 1 7.8818 1.9209 1.3073 49 1 7.3858 2.4274 2.9402 50 1 6.5115 1.1177 2.1106 51 1 4.0206 0.3799 -0.0105 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000528626744.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:43 Heat of formation + Delta-G solvation = -25.639498 kcal Electronic energy + Delta-G solvation = -26870.904963 eV Core-core repulsion = 23348.706526 eV Total energy + Delta-G solvation = -3522.198438 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.86433 -39.59561 -37.37042 -35.18327 -33.21449 -32.03034 -31.14677 -30.70311 -28.51964 -27.55543 -27.14934 -26.75752 -24.73233 -23.39973 -22.72830 -21.55471 -20.76692 -19.95579 -18.93800 -17.61943 -16.47167 -16.32570 -16.26783 -16.00199 -15.44607 -15.18009 -14.65551 -14.42881 -14.15774 -13.93914 -13.85401 -13.69885 -13.38834 -13.11093 -12.70963 -12.57758 -12.41409 -12.31368 -12.10011 -11.97437 -11.63037 -11.51142 -11.29867 -11.26293 -11.12546 -10.98522 -10.73686 -10.73279 -10.64961 -10.56203 -10.46732 -10.32228 -9.59055 -9.27629 -9.01213 -8.91746 -8.34491 -8.30770 -8.14608 -5.96138 -3.97794 1.15093 1.29306 3.00198 3.34708 3.40670 3.44780 3.56980 4.18058 4.46255 4.50697 4.57361 4.67149 4.68018 4.80562 4.82212 4.88024 5.00902 5.11790 5.15365 5.19463 5.26735 5.35662 5.39234 5.39780 5.54948 5.59728 5.65146 5.69065 5.77353 5.79227 5.84456 5.93794 5.96797 6.03981 6.10579 6.12672 6.13734 6.21938 6.28781 6.31211 6.36367 6.51696 6.59814 6.72294 6.82631 7.08057 7.17682 7.25574 7.41498 7.72858 7.88047 8.04728 8.48433 9.09440 9.65971 11.15356 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.015059 B = 0.002666 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.945757 B =10498.866558 C =11533.387336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.320 6.320 3 C 0.126 3.874 4 C -0.215 4.215 5 C -0.079 4.079 6 C -0.147 4.147 7 C -0.020 4.020 8 C -0.050 4.050 9 H 0.089 0.911 10 C 0.040 3.960 11 N -0.508 5.508 12 C 0.046 3.954 13 C -0.103 4.103 14 C 0.022 3.978 15 C -0.517 4.517 16 H 0.055 0.945 17 C 0.055 3.945 18 N -0.897 5.897 19 Si 0.891 3.109 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 C 0.039 3.961 24 C -0.057 4.057 25 C -0.142 4.142 26 C -0.133 4.133 27 C -0.150 4.150 28 H 0.098 0.902 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.124 0.876 32 H 0.123 0.877 33 H 0.124 0.876 34 H 0.084 0.916 35 H 0.050 0.950 36 H 0.030 0.970 37 H 0.070 0.930 38 H 0.055 0.945 39 H 0.045 0.955 40 H 0.013 0.987 41 H 0.015 0.985 42 H 0.260 0.740 43 H 0.079 0.921 44 H 0.042 0.958 45 H 0.058 0.942 46 H 0.051 0.949 47 H 0.061 0.939 48 H 0.065 0.935 49 H 0.054 0.946 50 H 0.052 0.948 51 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.358 -16.120 15.559 27.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.233 6.233 3 C 0.081 3.919 4 C -0.234 4.234 5 C -0.097 4.097 6 C -0.165 4.165 7 C -0.021 4.021 8 C -0.069 4.069 9 H 0.108 0.892 10 C -0.088 4.088 11 N -0.231 5.231 12 C -0.081 4.081 13 C -0.141 4.141 14 C -0.016 4.016 15 C -0.555 4.555 16 H 0.073 0.927 17 C -0.146 4.146 18 N -0.537 5.537 19 Si 0.719 3.281 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.198 1.198 23 C -0.089 4.089 24 C -0.057 4.057 25 C -0.199 4.199 26 C -0.190 4.190 27 C -0.168 4.168 28 H 0.116 0.884 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.142 0.858 32 H 0.141 0.859 33 H 0.141 0.859 34 H 0.102 0.898 35 H 0.068 0.932 36 H 0.048 0.952 37 H 0.088 0.912 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.031 0.969 41 H 0.034 0.966 42 H 0.069 0.931 43 H 0.098 0.902 44 H 0.060 0.940 45 H 0.077 0.923 46 H 0.070 0.930 47 H 0.080 0.920 48 H 0.084 0.916 49 H 0.073 0.927 50 H 0.071 0.929 51 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -15.744 -16.426 15.442 27.498 hybrid contribution -0.743 0.772 -0.952 1.433 sum -16.487 -15.654 14.491 26.961 Atomic orbital electron populations 1.23032 0.78542 1.03789 1.01314 1.86063 1.21256 1.27132 1.88864 1.18969 0.92243 0.84031 0.96695 1.21167 0.99791 0.92450 1.09995 1.20900 0.94515 0.96949 0.97346 1.20969 0.93573 0.98317 1.03686 1.19521 0.95111 0.92056 0.95406 1.21099 0.89832 1.00581 0.95349 0.89231 1.23250 0.92217 0.95846 0.97513 1.65439 1.34663 1.21502 1.01520 1.22450 0.99538 0.88056 0.98093 1.21593 0.99818 1.00841 0.91804 1.19076 0.96646 0.90599 0.95273 1.21257 1.42928 0.92515 0.98798 0.92696 1.25028 0.95879 0.95359 0.98290 1.69971 1.49112 0.97544 1.37047 0.86605 0.78813 0.77698 0.84966 1.20726 1.21258 1.19847 1.23252 0.98746 0.95539 0.91402 1.21246 0.95118 0.95475 0.93882 1.22111 0.97408 1.01913 0.98510 1.21826 0.99021 0.97713 1.00464 1.20266 0.91176 0.98127 1.07253 0.88360 0.92756 0.92675 0.85809 0.85878 0.85854 0.89779 0.93154 0.95197 0.91188 0.92611 0.93597 0.96911 0.96641 0.93087 0.90246 0.94001 0.92338 0.92956 0.92041 0.91603 0.92740 0.92931 0.85352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.32 -3.27 10.50 -19.42 -0.20 -3.47 16 3 C 0.13 1.36 6.69 -39.22 -0.26 1.10 16 4 C -0.22 -2.10 9.04 -39.44 -0.36 -2.45 16 5 C -0.08 -0.79 10.04 -39.60 -0.40 -1.19 16 6 C -0.15 -1.62 6.53 -39.56 -0.26 -1.88 16 7 C -0.02 -0.23 3.22 -104.65 -0.34 -0.57 16 8 C -0.05 -0.57 2.92 -90.39 -0.26 -0.84 16 9 H 0.09 1.01 7.55 -51.93 -0.39 0.62 16 10 C 0.04 0.55 5.14 -2.18 -0.01 0.54 16 11 N -0.51 -7.67 5.37 -229.98 -1.24 -8.91 16 12 C 0.05 0.82 4.81 -3.83 -0.02 0.80 16 13 C -0.10 -2.18 5.21 -26.73 -0.14 -2.32 16 14 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 15 C -0.52 -14.95 9.11 -34.44 -0.31 -15.27 16 16 H 0.05 1.55 7.74 -52.48 -0.41 1.15 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 18 N -0.90 -27.38 13.29 55.43 0.74 -26.64 16 19 Si 0.89 22.05 29.54 -169.99 -5.02 17.02 16 20 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 23 C 0.04 0.49 5.58 -2.18 -0.01 0.47 16 24 C -0.06 -0.61 1.02 -153.13 -0.16 -0.76 16 25 C -0.14 -1.40 7.21 37.16 0.27 -1.13 16 26 C -0.13 -1.31 8.23 37.16 0.31 -1.00 16 27 C -0.15 -1.66 9.51 -39.44 -0.37 -2.04 16 28 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 0.28 7.66 -51.93 -0.40 -0.11 16 30 H 0.05 0.31 7.66 -51.93 -0.40 -0.09 16 31 H 0.12 0.94 6.30 -52.48 -0.33 0.61 16 32 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 33 H 0.12 1.38 6.52 -52.49 -0.34 1.04 16 34 H 0.08 1.24 7.76 -51.93 -0.40 0.84 16 35 H 0.05 0.72 5.71 -51.93 -0.30 0.42 16 36 H 0.03 0.53 7.88 -51.93 -0.41 0.12 16 37 H 0.07 1.24 8.13 -51.93 -0.42 0.82 16 38 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.05 0.97 7.25 -51.93 -0.38 0.59 16 40 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 43 H 0.08 0.97 7.86 -51.93 -0.41 0.56 16 44 H 0.04 0.53 7.58 -51.93 -0.39 0.13 16 45 H 0.06 0.59 7.10 -51.93 -0.37 0.22 16 46 H 0.05 0.47 8.14 -51.92 -0.42 0.05 16 47 H 0.06 0.62 5.68 -51.93 -0.29 0.33 16 48 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 49 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 50 H 0.05 0.47 8.14 -51.92 -0.42 0.05 16 51 H 0.13 1.32 8.01 -52.48 -0.42 0.90 16 LS Contribution 392.41 15.07 5.91 5.91 Total: -1.00 -31.39 392.41 -10.38 -41.77 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -9.00 Total: -2.28 kcal Atomic # 6 Polarization: -21.83 SS G_CDS: -1.57 Total: -23.41 kcal Atomic # 7 Polarization: -35.05 SS G_CDS: -0.50 Total: -35.55 kcal Atomic # 8 Polarization: -3.27 SS G_CDS: -0.20 Total: -3.47 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.39 -10.38 -41.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528626744.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.131 kcal (2) G-P(sol) polarization free energy of solvation -31.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds