Wall clock time and date at job start Tue Mar 31 2020 11:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35897 * 116.99870 * 2 1 4 4 C 1.38752 * 120.05935 * 0.02562 * 3 2 1 5 5 C 1.38119 * 119.94772 * 180.02562 * 4 3 2 6 6 C 1.38292 * 120.05285 * 0.02562 * 5 4 3 7 7 C 1.38245 * 120.10969 * 359.95925 * 6 5 4 8 8 C 1.50708 * 119.96861 * 180.02562 * 7 6 5 9 9 H 1.09000 * 110.28252 * 193.44657 * 8 7 6 10 10 C 1.54381 * 110.32421 * 315.57104 * 8 7 6 11 11 N 1.48554 * 104.59447 * 142.84921 * 10 8 7 12 12 C 1.46902 * 111.00332 * 200.95885 * 11 10 8 13 13 C 1.52996 * 109.46945 * 290.13202 * 12 11 10 14 14 C 1.53002 * 109.46739 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.47337 * 180.02562 * 14 13 12 16 16 H 1.08003 * 119.99803 * 359.97438 * 15 14 13 17 17 C 1.37875 * 120.00186 * 180.02562 * 15 14 13 18 18 N 1.31513 * 119.99950 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99867 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47469 * 89.99740 * 19 17 15 21 21 H 1.48500 * 109.46958 * 209.99657 * 19 17 15 22 22 H 1.48501 * 109.47130 * 329.99497 * 19 17 15 23 23 C 1.48560 * 104.22590 * 320.52410 * 11 10 8 24 24 C 1.54256 * 110.41315 * 71.26112 * 8 7 6 25 25 C 1.53001 * 110.32065 * 359.95705 * 24 8 7 26 26 C 1.52999 * 110.32507 * 122.16149 * 24 8 7 27 27 C 1.38157 * 120.05633 * 0.27565 * 7 6 5 28 28 H 1.08998 * 109.47328 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47184 * 300.00365 * 1 2 3 30 30 H 1.09005 * 109.47006 * 59.99842 * 1 2 3 31 31 H 1.08003 * 120.02807 * 0.03380 * 4 3 2 32 32 H 1.07992 * 119.97532 * 179.97438 * 5 4 3 33 33 H 1.07998 * 119.94469 * 179.97438 * 6 5 4 34 34 H 1.08997 * 110.41371 * 261.63426 * 10 8 7 35 35 H 1.09005 * 110.40824 * 23.95666 * 10 8 7 36 36 H 1.08999 * 109.46509 * 50.13084 * 12 11 10 37 37 H 1.08995 * 109.47023 * 170.13008 * 12 11 10 38 38 H 1.08999 * 109.47420 * 299.99324 * 13 12 11 39 39 H 1.08995 * 109.47419 * 60.00048 * 13 12 11 40 40 H 1.08997 * 109.47381 * 299.99862 * 14 13 12 41 41 H 1.09003 * 109.47469 * 59.99871 * 14 13 12 42 42 H 0.97008 * 119.99461 * 180.02562 * 18 17 15 43 43 H 1.08995 * 110.41495 * 158.25790 * 23 11 10 44 44 H 1.09006 * 110.40834 * 280.58288 * 23 11 10 45 45 H 1.09002 * 109.47513 * 53.41459 * 25 24 8 46 46 H 1.09011 * 109.47129 * 173.41458 * 25 24 8 47 47 H 1.09002 * 109.47271 * 293.40879 * 25 24 8 48 48 H 1.08995 * 109.46942 * 59.99956 * 26 24 8 49 49 H 1.08998 * 109.47148 * 180.02562 * 26 24 8 50 50 H 1.09010 * 109.47180 * 300.00437 * 26 24 8 51 51 H 1.08007 * 120.02657 * 179.74959 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2915 2.3753 0.0005 5 6 1.9209 3.6047 0.0000 6 6 3.3020 3.6757 -0.0016 7 6 4.0560 2.5170 -0.0018 8 6 5.5609 2.5981 -0.0030 9 1 5.9915 1.6254 -0.2408 10 6 6.0399 3.6589 -1.0171 11 7 7.2123 4.2973 -0.3653 12 6 7.4794 5.6215 -0.9426 13 6 8.0058 5.4588 -2.3699 14 6 8.2834 6.8380 -2.9713 15 6 8.8013 6.6779 -4.3775 16 1 8.9210 5.6910 -4.7998 17 6 9.1234 7.7911 -5.1244 18 7 8.9782 8.9927 -4.6100 19 14 9.7661 7.5925 -6.8671 20 1 8.6256 7.5908 -7.8182 21 1 10.6780 8.7193 -7.1898 22 1 10.5057 6.3096 -6.9788 23 6 6.8201 4.4085 1.0633 24 6 6.0742 3.0912 1.3655 25 6 4.8999 3.3504 2.3115 26 6 7.0323 2.0656 1.9747 27 6 3.4311 1.2848 -0.0062 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 0.2128 2.3204 0.0015 32 1 1.3341 4.5113 0.0000 33 1 3.7923 4.6380 -0.0024 34 1 6.3366 3.1842 -1.9523 35 1 5.2556 4.3943 -1.1970 36 1 6.5577 6.2031 -0.9593 37 1 8.2242 6.1382 -0.3373 38 1 8.9275 4.8772 -2.3532 39 1 7.2611 4.9421 -2.9752 40 1 7.3615 7.4193 -2.9882 41 1 9.0280 7.3551 -2.3662 42 1 9.2045 9.7759 -5.1358 43 1 7.7043 4.4981 1.6944 44 1 6.1604 5.2636 1.2109 45 1 4.2712 2.4614 2.3624 46 1 5.2794 3.5845 3.3062 47 1 4.3125 4.1901 1.9399 48 1 7.8818 1.9209 1.3073 49 1 7.3858 2.4274 2.9402 50 1 6.5115 1.1177 2.1106 51 1 4.0206 0.3799 -0.0105 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528626744.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:42 Heat of formation + Delta-G solvation = -42.823999 kcal Electronic energy + Delta-G solvation = -26871.650139 eV Core-core repulsion = 23348.706526 eV Total energy + Delta-G solvation = -3522.943613 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.73731 -40.44322 -38.24906 -36.60691 -35.06941 -32.91995 -32.86947 -31.50805 -29.60224 -28.48754 -28.05493 -27.90481 -26.08562 -24.77491 -23.54611 -22.94051 -21.85750 -21.46728 -19.85752 -18.49207 -18.39829 -17.23422 -17.15576 -16.65546 -16.61673 -16.48180 -16.20912 -15.79336 -15.14622 -15.12916 -14.77566 -14.54937 -14.42544 -14.21160 -13.95301 -13.86082 -13.67096 -13.36956 -13.08827 -13.02434 -12.94220 -12.75483 -12.54283 -12.49255 -12.39862 -12.16780 -12.07196 -11.93040 -11.83767 -11.64576 -11.55516 -11.40831 -11.36822 -11.31048 -11.01963 -10.55542 -9.72538 -9.42479 -9.08225 -8.20508 -6.31327 0.35653 0.49168 1.39201 1.40752 1.52171 2.36581 2.40616 2.76536 3.04109 3.12435 3.51101 3.72246 3.76900 3.90899 4.05747 4.17675 4.18988 4.24121 4.28505 4.34265 4.38387 4.39929 4.42371 4.47199 4.57443 4.67394 4.72407 4.74015 4.77007 4.81311 4.85178 4.90003 4.94476 5.01796 5.05324 5.09076 5.14165 5.15543 5.24524 5.28653 5.33721 5.36479 5.49119 5.49749 5.51871 5.69010 5.73553 5.81069 5.85431 5.96762 6.06662 6.27536 6.47297 6.85072 7.37675 8.91438 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.015059 B = 0.002666 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.945757 B =10498.866558 C =11533.387336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.337 6.337 3 C 0.118 3.882 4 C -0.215 4.215 5 C -0.082 4.082 6 C -0.158 4.158 7 C -0.024 4.024 8 C -0.042 4.042 9 H 0.092 0.908 10 C 0.038 3.962 11 N -0.514 5.514 12 C 0.059 3.941 13 C -0.086 4.086 14 C 0.027 3.973 15 C -0.542 4.542 16 H 0.057 0.943 17 C -0.001 4.001 18 N -0.933 5.933 19 Si 0.965 3.035 20 H -0.272 1.272 21 H -0.280 1.280 22 H -0.264 1.264 23 C 0.038 3.962 24 C -0.050 4.050 25 C -0.135 4.135 26 C -0.130 4.130 27 C -0.162 4.162 28 H 0.117 0.883 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.147 0.853 32 H 0.141 0.859 33 H 0.117 0.883 34 H 0.071 0.929 35 H 0.045 0.955 36 H 0.027 0.973 37 H 0.068 0.932 38 H 0.050 0.950 39 H 0.045 0.955 40 H -0.010 1.010 41 H -0.008 1.008 42 H 0.264 0.736 43 H 0.085 0.915 44 H 0.043 0.957 45 H 0.057 0.943 46 H 0.063 0.937 47 H 0.057 0.943 48 H 0.054 0.946 49 H 0.065 0.935 50 H 0.062 0.938 51 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.417 -17.427 15.847 29.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.251 6.251 3 C 0.072 3.928 4 C -0.233 4.233 5 C -0.100 4.100 6 C -0.177 4.177 7 C -0.025 4.025 8 C -0.061 4.061 9 H 0.110 0.890 10 C -0.090 4.090 11 N -0.238 5.238 12 C -0.069 4.069 13 C -0.124 4.124 14 C -0.011 4.011 15 C -0.580 4.580 16 H 0.075 0.925 17 C -0.199 4.199 18 N -0.573 5.573 19 Si 0.789 3.211 20 H -0.197 1.197 21 H -0.205 1.205 22 H -0.188 1.188 23 C -0.090 4.090 24 C -0.051 4.051 25 C -0.192 4.192 26 C -0.187 4.187 27 C -0.180 4.180 28 H 0.136 0.864 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.164 0.836 32 H 0.159 0.841 33 H 0.135 0.865 34 H 0.089 0.911 35 H 0.063 0.937 36 H 0.045 0.955 37 H 0.087 0.913 38 H 0.069 0.931 39 H 0.064 0.936 40 H 0.008 0.992 41 H 0.011 0.989 42 H 0.073 0.927 43 H 0.103 0.897 44 H 0.061 0.939 45 H 0.076 0.924 46 H 0.082 0.918 47 H 0.076 0.924 48 H 0.073 0.927 49 H 0.084 0.916 50 H 0.081 0.919 51 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -16.815 -17.752 15.743 29.081 hybrid contribution -0.486 1.165 -1.021 1.624 sum -17.300 -16.587 14.722 28.128 Atomic orbital electron populations 1.23320 0.76557 1.05463 1.02175 1.86041 1.23380 1.26939 1.88754 1.19118 0.92348 0.84732 0.96561 1.21427 1.00981 0.91887 1.09030 1.21149 0.94250 0.97934 0.96667 1.21001 0.94252 0.97959 1.04448 1.19432 0.94655 0.92300 0.96090 1.21014 0.90383 0.99694 0.94997 0.89000 1.23245 0.91626 0.96309 0.97778 1.65371 1.35725 1.19611 1.03065 1.22163 0.99181 0.89620 0.95974 1.21324 0.99698 0.97515 0.93891 1.18967 0.94631 0.92848 0.94660 1.21676 1.43385 0.92855 1.00102 0.92456 1.25985 0.95909 0.94908 1.03070 1.70099 1.49846 0.98434 1.38965 0.85451 0.78427 0.78085 0.79126 1.19719 1.20545 1.18837 1.23334 0.99278 0.96751 0.89597 1.21218 0.95480 0.94622 0.93759 1.22035 0.96803 1.01718 0.98683 1.21801 0.98404 0.97904 1.00606 1.20367 0.91775 0.98149 1.07755 0.86450 0.91630 0.91984 0.83573 0.84076 0.86503 0.91057 0.93687 0.95481 0.91309 0.93081 0.93633 0.99198 0.98916 0.92749 0.89686 0.93917 0.92378 0.91837 0.92444 0.92715 0.91638 0.91918 0.85084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 113.37 1.11 1.31 16 2 O -0.34 -6.40 10.50 -92.39 -0.97 -7.37 16 3 C 0.12 2.40 6.69 22.51 0.15 2.55 16 4 C -0.21 -3.79 9.04 22.36 0.20 -3.59 16 5 C -0.08 -1.52 10.04 22.25 0.22 -1.29 16 6 C -0.16 -3.38 6.53 22.28 0.15 -3.24 16 7 C -0.02 -0.53 3.22 -19.88 -0.06 -0.59 16 8 C -0.04 -0.94 2.92 -10.64 -0.03 -0.98 16 9 H 0.09 2.02 7.55 -2.39 -0.02 2.00 16 10 C 0.04 1.08 5.14 86.45 0.44 1.52 16 11 N -0.51 -15.53 5.37 -881.53 -4.73 -20.26 16 12 C 0.06 2.12 4.81 86.30 0.41 2.53 16 13 C -0.09 -3.76 5.21 30.59 0.16 -3.60 16 14 C 0.03 1.45 4.97 29.85 0.15 1.60 16 15 C -0.54 -31.92 9.11 25.60 0.23 -31.69 16 16 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 17 C 0.00 -0.07 5.46 84.65 0.46 0.40 16 18 N -0.93 -57.85 13.29 21.45 0.28 -57.57 16 19 Si 0.96 45.27 29.54 68.60 2.03 47.29 16 20 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 21 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 22 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 23 C 0.04 0.93 5.58 86.45 0.48 1.41 16 24 C -0.05 -1.02 1.02 -51.29 -0.05 -1.07 16 25 C -0.14 -2.45 7.21 71.98 0.52 -1.93 16 26 C -0.13 -2.34 8.23 71.98 0.59 -1.75 16 27 C -0.16 -3.48 9.51 22.36 0.21 -3.26 16 28 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.07 0.52 7.66 -2.39 -0.02 0.51 16 30 H 0.06 0.55 7.66 -2.38 -0.02 0.53 16 31 H 0.15 1.83 6.30 -2.91 -0.02 1.81 16 32 H 0.14 2.02 8.06 -2.91 -0.02 2.00 16 33 H 0.12 2.60 6.52 -2.91 -0.02 2.59 16 34 H 0.07 2.16 7.76 -2.39 -0.02 2.14 16 35 H 0.04 1.31 5.71 -2.38 -0.01 1.30 16 36 H 0.03 0.98 7.88 -2.39 -0.02 0.96 16 37 H 0.07 2.48 8.13 -2.39 -0.02 2.46 16 38 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 39 H 0.04 1.96 7.25 -2.39 -0.02 1.94 16 40 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 41 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 42 H 0.26 15.29 8.31 -92.70 -0.77 14.52 16 43 H 0.08 1.98 7.86 -2.39 -0.02 1.96 16 44 H 0.04 1.04 7.58 -2.38 -0.02 1.02 16 45 H 0.06 1.08 7.10 -2.39 -0.02 1.06 16 46 H 0.06 1.00 8.14 -2.38 -0.02 0.99 16 47 H 0.06 1.09 5.68 -2.39 -0.01 1.08 16 48 H 0.05 1.11 8.14 -2.39 -0.02 1.10 16 49 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 50 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 51 H 0.13 2.63 8.01 -2.91 -0.02 2.61 16 Total: -1.00 -67.57 392.41 2.84 -64.73 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: 0.88 Total: 14.84 kcal Atomic # 6 Polarization: -47.03 SS G_CDS: 5.36 Total: -41.67 kcal Atomic # 7 Polarization: -73.38 SS G_CDS: -4.45 Total: -77.83 kcal Atomic # 8 Polarization: -6.40 SS G_CDS: -0.97 Total: -7.37 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.29 kcal Total: -67.57 2.84 -64.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528626744.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.909 kcal (2) G-P(sol) polarization free energy of solvation -67.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds