Wall clock time and date at job start Tue Mar 31 2020 12:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46916 * 2 1 4 4 C 1.52999 * 109.47512 * 120.00028 * 2 1 3 5 5 C 1.53001 * 109.47445 * 174.02475 * 4 2 1 6 6 C 1.52997 * 109.47131 * 173.77927 * 5 4 2 7 7 C 1.53006 * 109.46843 * 184.99937 * 6 5 4 8 8 C 1.52992 * 109.46998 * 65.00106 * 7 6 5 9 9 C 1.52998 * 109.46793 * 185.00324 * 7 6 5 10 10 N 1.46505 * 109.46960 * 293.78204 * 5 4 2 11 11 C 1.34777 * 119.99635 * 154.99935 * 10 5 4 12 12 O 1.21583 * 120.00073 * 359.97438 * 11 10 5 13 13 C 1.47647 * 119.99505 * 180.02562 * 11 10 5 14 14 C 1.40009 * 119.89815 * 0.24278 * 13 11 10 15 15 C 1.36314 * 120.10872 * 180.25963 * 14 13 11 16 16 C 1.40884 * 119.88834 * 359.47625 * 15 14 13 17 17 C 1.41117 * 120.10317 * 180.29781 * 16 15 14 18 18 H 1.08005 * 119.99797 * 154.77820 * 17 16 15 19 19 C 1.40225 * 119.99712 * 334.77563 * 17 16 15 20 20 N 1.30637 * 120.00165 * 343.85019 * 19 17 16 21 21 Si 1.86801 * 119.99529 * 163.84854 * 19 17 16 22 22 H 1.48498 * 109.47297 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46884 * 120.00079 * 21 19 17 24 24 H 1.48496 * 109.47060 * 239.99859 * 21 19 17 25 25 C 1.40896 * 119.79468 * 0.27639 * 16 15 14 26 26 C 1.36312 * 119.89130 * 0.02562 * 25 16 15 27 27 H 1.08997 * 109.46855 * 184.23342 * 1 2 3 28 28 H 1.08997 * 109.46948 * 304.23373 * 1 2 3 29 29 H 1.09002 * 109.47312 * 64.23544 * 1 2 3 30 30 H 1.09000 * 109.47351 * 240.00573 * 2 1 3 31 31 H 1.08998 * 109.46977 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.46967 * 299.99810 * 3 2 1 33 33 H 1.09002 * 109.47034 * 60.00488 * 3 2 1 34 34 H 1.08995 * 109.46793 * 54.02538 * 4 2 1 35 35 H 1.09002 * 109.46974 * 294.02674 * 4 2 1 36 36 H 1.09001 * 109.46557 * 53.77835 * 5 4 2 37 37 H 1.08993 * 109.47140 * 304.99943 * 6 5 4 38 38 H 1.08998 * 109.46992 * 65.00161 * 6 5 4 39 39 H 1.08996 * 109.47052 * 304.99735 * 7 6 5 40 40 H 1.09005 * 109.47321 * 59.99957 * 8 7 6 41 41 H 1.09002 * 109.47054 * 179.97438 * 8 7 6 42 42 H 1.08993 * 109.47725 * 300.00111 * 8 7 6 43 43 H 1.08999 * 109.47797 * 59.99873 * 9 7 6 44 44 H 1.09002 * 109.46993 * 180.02562 * 9 7 6 45 45 H 1.09005 * 109.46973 * 299.99705 * 9 7 6 46 46 H 0.96996 * 119.99833 * 334.99730 * 10 5 4 47 47 H 1.08004 * 119.94663 * 0.03680 * 14 13 11 48 48 H 1.07995 * 120.05852 * 179.74894 * 15 14 13 49 49 H 0.97003 * 119.99787 * 179.97438 * 20 19 17 50 50 H 1.08004 * 120.05057 * 180.02562 * 25 16 15 51 51 H 1.07996 * 119.94578 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5627 -0.8526 1.1764 6 6 4.0880 -1.4325 2.4911 7 6 5.6178 -1.4478 2.4665 8 6 6.1415 -0.0111 2.4199 9 6 6.1411 -2.1409 3.7261 10 7 3.9236 -1.7435 0.0708 11 6 5.1329 -1.6354 -0.5145 12 8 5.9240 -0.7981 -0.1253 13 6 5.4964 -2.5329 -1.6290 14 6 4.5814 -3.4921 -2.0795 15 6 4.9145 -4.3265 -3.1047 16 6 6.1777 -4.2150 -3.7184 17 6 6.5249 -5.0723 -4.7843 18 1 7.2647 -4.7623 -5.5076 19 6 5.9095 -6.3265 -4.9042 20 7 5.2653 -6.8378 -3.8891 21 14 6.0107 -7.2663 -6.5154 22 1 6.7913 -6.4762 -7.5011 23 1 6.6808 -8.5715 -6.2859 24 1 4.6410 -7.4985 -7.0399 25 6 7.0932 -3.2448 -3.2650 26 6 6.7534 -2.4190 -2.2351 27 1 -0.3633 -1.0248 0.0759 28 1 -0.3633 0.5781 0.8496 29 1 -0.3634 0.4467 -0.9255 30 1 1.8934 -0.5137 -0.8900 31 1 3.1299 1.4426 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.5921 -1.7133 1.3043 35 1 1.7667 -0.1494 2.1360 36 1 4.0045 0.1299 1.0103 37 1 3.7442 -0.8174 3.3226 38 1 3.7164 -2.4498 2.6137 39 1 5.9616 -1.9887 1.5849 40 1 5.7977 0.5298 3.3017 41 1 7.2314 -0.0220 2.4029 42 1 5.7687 0.4827 1.5227 43 1 5.7680 -3.1645 3.7594 44 1 7.2310 -2.1515 3.7089 45 1 5.7973 -1.6001 4.6079 46 1 3.2924 -2.4112 -0.2399 47 1 3.6114 -3.5735 -1.6116 48 1 4.2096 -5.0688 -3.4489 49 1 4.8393 -7.7053 -3.9722 50 1 8.0626 -3.1555 -3.7328 51 1 7.4546 -1.6752 -1.8866 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000536104905.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:19 Heat of formation + Delta-G solvation = -60.941476 kcal Electronic energy + Delta-G solvation = -27390.521061 eV Core-core repulsion = 23866.791815 eV Total energy + Delta-G solvation = -3523.729246 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -39.74294 -37.69225 -36.61443 -35.55965 -33.84319 -33.42623 -30.65969 -29.46706 -29.24116 -27.23503 -26.83104 -26.20200 -25.82401 -22.53784 -21.40334 -20.90389 -19.89166 -19.58720 -19.40418 -17.51046 -16.74681 -15.95848 -15.50384 -15.21930 -14.94400 -14.36207 -14.04842 -13.94418 -13.79384 -13.45190 -13.28568 -13.18173 -12.77174 -12.49243 -12.27818 -12.20685 -12.14424 -12.05128 -11.90560 -11.85715 -11.52810 -11.42093 -11.33116 -11.25380 -11.03598 -10.93560 -10.70110 -10.64447 -10.63114 -10.31370 -10.15809 -10.02226 -9.94798 -9.54699 -9.34836 -8.79334 -8.40420 -7.70255 -7.50886 -7.00744 -4.59108 2.26206 2.91556 2.95545 3.01014 3.04970 3.75138 3.89162 3.91994 4.58685 4.62146 4.86614 4.89207 5.18260 5.24420 5.27843 5.42475 5.50925 5.58285 5.59647 5.63697 5.70062 5.73582 5.79681 5.84158 5.92891 5.93198 5.98797 6.05570 6.06911 6.10115 6.14568 6.18736 6.22864 6.32177 6.33585 6.36787 6.47485 6.55685 6.77739 6.81506 6.85264 6.90006 7.03837 7.15149 7.16767 7.45539 7.68074 7.82636 7.87903 8.09223 8.32664 8.42124 8.65216 8.77091 9.18166 9.90900 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.013749 B = 0.003371 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.024342 B = 8305.175091 C = 9330.081713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.099 4.099 3 C -0.148 4.148 4 C -0.122 4.122 5 C 0.142 3.858 6 C -0.123 4.123 7 C -0.096 4.096 8 C -0.134 4.134 9 C -0.146 4.146 10 N -0.733 5.733 11 C 0.571 3.429 12 O -0.564 6.564 13 C -0.282 4.282 14 C -0.064 4.064 15 C -0.177 4.177 16 C 0.128 3.872 17 C -0.444 4.444 18 H 0.084 0.916 19 C 0.074 3.926 20 N -0.775 5.775 21 Si 0.912 3.088 22 H -0.258 1.258 23 H -0.272 1.272 24 H -0.269 1.269 25 C -0.239 4.239 26 C -0.023 4.023 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.075 0.925 31 H 0.059 0.941 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.091 0.909 37 H 0.061 0.939 38 H 0.058 0.942 39 H 0.085 0.915 40 H 0.032 0.968 41 H 0.043 0.957 42 H 0.075 0.925 43 H 0.048 0.952 44 H 0.050 0.950 45 H 0.045 0.955 46 H 0.394 0.606 47 H 0.087 0.913 48 H 0.120 0.880 49 H 0.285 0.715 50 H 0.096 0.904 51 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.883 7.179 8.554 13.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.117 4.117 3 C -0.205 4.205 4 C -0.160 4.160 5 C 0.038 3.962 6 C -0.162 4.162 7 C -0.114 4.114 8 C -0.191 4.191 9 C -0.203 4.203 10 N -0.386 5.386 11 C 0.366 3.634 12 O -0.446 6.446 13 C -0.286 4.286 14 C -0.083 4.083 15 C -0.197 4.197 16 C 0.125 3.875 17 C -0.472 4.472 18 H 0.102 0.898 19 C -0.146 4.146 20 N -0.399 5.399 21 Si 0.736 3.264 22 H -0.181 1.181 23 H -0.197 1.197 24 H -0.194 1.194 25 C -0.258 4.258 26 C -0.042 4.042 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.094 0.906 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.109 0.891 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.103 0.897 40 H 0.051 0.949 41 H 0.062 0.938 42 H 0.094 0.906 43 H 0.067 0.933 44 H 0.069 0.931 45 H 0.065 0.935 46 H 0.229 0.771 47 H 0.105 0.895 48 H 0.138 0.862 49 H 0.096 0.904 50 H 0.115 0.885 51 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -7.459 7.563 8.922 13.872 hybrid contribution -0.348 -1.039 -0.710 1.306 sum -7.807 6.524 8.212 13.074 Atomic orbital electron populations 1.21840 0.95501 1.01538 1.01450 1.21114 0.95219 0.96583 0.98790 1.21879 1.01642 0.95805 1.01210 1.21948 0.94872 1.00851 0.98311 1.21032 0.93592 0.95203 0.86417 1.22066 0.96364 1.00814 0.96964 1.21155 0.94256 0.97485 0.98534 1.21794 1.00341 0.95989 1.00973 1.21863 1.00719 0.99902 0.97818 1.45982 1.17827 1.38635 1.36169 1.18494 0.80366 0.82992 0.81554 1.90625 1.50454 1.38026 1.65454 1.18968 0.98744 1.05795 1.05091 1.20482 0.96331 0.94834 0.96681 1.20997 0.97488 1.01421 0.99750 1.17789 0.90213 0.89572 0.89945 1.19871 1.19358 0.99025 1.08974 0.89795 1.26075 0.92815 0.97980 0.97774 1.69742 1.23873 1.16283 1.29953 0.86181 0.79296 0.79309 0.81612 1.18101 1.19696 1.19425 1.20726 0.99497 1.03427 1.02182 1.20352 0.94101 0.95909 0.93880 0.92784 0.92992 0.92856 0.90610 0.92152 0.92984 0.93031 0.91640 0.90970 0.89101 0.92056 0.92299 0.89660 0.94929 0.93767 0.90615 0.93329 0.93122 0.93546 0.77107 0.89459 0.86183 0.90381 0.88538 0.88165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.19 37.16 0.34 -1.00 16 2 C -0.10 -1.06 2.87 -90.62 -0.26 -1.32 16 3 C -0.15 -1.60 8.97 37.16 0.33 -1.26 16 4 C -0.12 -1.28 4.20 -26.73 -0.11 -1.39 16 5 C 0.14 1.88 2.06 -67.93 -0.14 1.74 16 6 C -0.12 -1.59 4.36 -26.73 -0.12 -1.71 16 7 C -0.10 -1.44 2.38 -90.62 -0.22 -1.66 16 8 C -0.13 -2.01 8.03 37.15 0.30 -1.71 16 9 C -0.15 -1.92 9.19 37.16 0.34 -1.58 16 10 N -0.73 -11.43 4.39 -54.81 -0.24 -11.67 16 11 C 0.57 11.22 6.32 -12.42 -0.08 11.14 16 12 O -0.56 -11.87 11.28 5.29 0.06 -11.81 16 13 C -0.28 -6.21 5.89 -104.73 -0.62 -6.83 16 14 C -0.06 -1.39 9.47 -39.61 -0.38 -1.77 16 15 C -0.18 -4.31 8.63 -39.27 -0.34 -4.65 16 16 C 0.13 3.25 5.57 -106.80 -0.60 2.65 16 17 C -0.44 -11.07 9.05 -37.74 -0.34 -11.41 16 18 H 0.08 2.01 7.90 -52.48 -0.41 1.59 16 19 C 0.07 1.73 5.17 -17.31 -0.09 1.64 16 20 N -0.77 -18.57 10.89 55.56 0.60 -17.97 16 21 Si 0.91 17.31 29.59 -169.99 -5.03 12.28 16 22 H -0.26 -4.87 7.11 56.52 0.40 -4.46 16 23 H -0.27 -5.10 7.11 56.52 0.40 -4.69 16 24 H -0.27 -5.02 7.11 56.52 0.40 -4.61 16 25 C -0.24 -5.75 9.73 -39.27 -0.38 -6.13 16 26 C -0.02 -0.54 9.52 -39.61 -0.38 -0.91 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.08 0.95 7.64 -51.93 -0.40 0.55 16 31 H 0.06 0.75 6.47 -51.93 -0.34 0.41 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.09 1.34 4.12 -51.93 -0.21 1.13 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.09 1.59 5.19 -51.93 -0.27 1.32 16 40 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.08 1.26 4.75 -51.93 -0.25 1.01 16 43 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.39 5.73 6.60 -40.82 -0.27 5.46 16 47 H 0.09 1.62 6.37 -52.48 -0.33 1.28 16 48 H 0.12 2.98 6.13 -52.49 -0.32 2.65 16 49 H 0.29 6.14 8.29 -40.82 -0.34 5.80 16 50 H 0.10 2.18 8.06 -52.48 -0.42 1.76 16 51 H 0.10 2.24 7.63 -52.49 -0.40 1.84 16 LS Contribution 391.23 15.07 5.90 5.90 Total: -1.00 -26.07 391.23 -10.11 -36.19 By element: Atomic # 1 Polarization: 21.92 SS G_CDS: -8.68 Total: 13.24 kcal Atomic # 6 Polarization: -23.44 SS G_CDS: -2.72 Total: -26.16 kcal Atomic # 7 Polarization: -30.00 SS G_CDS: 0.36 Total: -29.64 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: 0.06 Total: -11.81 kcal Atomic # 14 Polarization: 17.31 SS G_CDS: -5.03 Total: 12.28 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -26.07 -10.11 -36.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000536104905.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.756 kcal (2) G-P(sol) polarization free energy of solvation -26.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds