Wall clock time and date at job start Tue Mar 31 2020 12:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46916 * 2 1 4 4 C 1.52999 * 109.47512 * 120.00028 * 2 1 3 5 5 C 1.53001 * 109.47445 * 174.02475 * 4 2 1 6 6 C 1.52997 * 109.47131 * 173.77927 * 5 4 2 7 7 C 1.53006 * 109.46843 * 184.99937 * 6 5 4 8 8 C 1.52992 * 109.46998 * 65.00106 * 7 6 5 9 9 C 1.52998 * 109.46793 * 185.00324 * 7 6 5 10 10 N 1.46505 * 109.46960 * 293.78204 * 5 4 2 11 11 C 1.34777 * 119.99635 * 154.99935 * 10 5 4 12 12 O 1.21583 * 120.00073 * 359.97438 * 11 10 5 13 13 C 1.47647 * 119.99505 * 180.02562 * 11 10 5 14 14 C 1.40009 * 119.89815 * 0.24278 * 13 11 10 15 15 C 1.36314 * 120.10872 * 180.25963 * 14 13 11 16 16 C 1.40884 * 119.88834 * 359.47625 * 15 14 13 17 17 C 1.41117 * 120.10317 * 180.29781 * 16 15 14 18 18 H 1.08005 * 119.99797 * 154.77820 * 17 16 15 19 19 C 1.40225 * 119.99712 * 334.77563 * 17 16 15 20 20 N 1.30637 * 120.00165 * 343.85019 * 19 17 16 21 21 Si 1.86801 * 119.99529 * 163.84854 * 19 17 16 22 22 H 1.48498 * 109.47297 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46884 * 120.00079 * 21 19 17 24 24 H 1.48496 * 109.47060 * 239.99859 * 21 19 17 25 25 C 1.40896 * 119.79468 * 0.27639 * 16 15 14 26 26 C 1.36312 * 119.89130 * 0.02562 * 25 16 15 27 27 H 1.08997 * 109.46855 * 184.23342 * 1 2 3 28 28 H 1.08997 * 109.46948 * 304.23373 * 1 2 3 29 29 H 1.09002 * 109.47312 * 64.23544 * 1 2 3 30 30 H 1.09000 * 109.47351 * 240.00573 * 2 1 3 31 31 H 1.08998 * 109.46977 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.46967 * 299.99810 * 3 2 1 33 33 H 1.09002 * 109.47034 * 60.00488 * 3 2 1 34 34 H 1.08995 * 109.46793 * 54.02538 * 4 2 1 35 35 H 1.09002 * 109.46974 * 294.02674 * 4 2 1 36 36 H 1.09001 * 109.46557 * 53.77835 * 5 4 2 37 37 H 1.08993 * 109.47140 * 304.99943 * 6 5 4 38 38 H 1.08998 * 109.46992 * 65.00161 * 6 5 4 39 39 H 1.08996 * 109.47052 * 304.99735 * 7 6 5 40 40 H 1.09005 * 109.47321 * 59.99957 * 8 7 6 41 41 H 1.09002 * 109.47054 * 179.97438 * 8 7 6 42 42 H 1.08993 * 109.47725 * 300.00111 * 8 7 6 43 43 H 1.08999 * 109.47797 * 59.99873 * 9 7 6 44 44 H 1.09002 * 109.46993 * 180.02562 * 9 7 6 45 45 H 1.09005 * 109.46973 * 299.99705 * 9 7 6 46 46 H 0.96996 * 119.99833 * 334.99730 * 10 5 4 47 47 H 1.08004 * 119.94663 * 0.03680 * 14 13 11 48 48 H 1.07995 * 120.05852 * 179.74894 * 15 14 13 49 49 H 0.97003 * 119.99787 * 179.97438 * 20 19 17 50 50 H 1.08004 * 120.05057 * 180.02562 * 25 16 15 51 51 H 1.07996 * 119.94578 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5627 -0.8526 1.1764 6 6 4.0880 -1.4325 2.4911 7 6 5.6178 -1.4478 2.4665 8 6 6.1415 -0.0111 2.4199 9 6 6.1411 -2.1409 3.7261 10 7 3.9236 -1.7435 0.0708 11 6 5.1329 -1.6354 -0.5145 12 8 5.9240 -0.7981 -0.1253 13 6 5.4964 -2.5329 -1.6290 14 6 4.5814 -3.4921 -2.0795 15 6 4.9145 -4.3265 -3.1047 16 6 6.1777 -4.2150 -3.7184 17 6 6.5249 -5.0723 -4.7843 18 1 7.2647 -4.7623 -5.5076 19 6 5.9095 -6.3265 -4.9042 20 7 5.2653 -6.8378 -3.8891 21 14 6.0107 -7.2663 -6.5154 22 1 6.7913 -6.4762 -7.5011 23 1 6.6808 -8.5715 -6.2859 24 1 4.6410 -7.4985 -7.0399 25 6 7.0932 -3.2448 -3.2650 26 6 6.7534 -2.4190 -2.2351 27 1 -0.3633 -1.0248 0.0759 28 1 -0.3633 0.5781 0.8496 29 1 -0.3634 0.4467 -0.9255 30 1 1.8934 -0.5137 -0.8900 31 1 3.1299 1.4426 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.5921 -1.7133 1.3043 35 1 1.7667 -0.1494 2.1360 36 1 4.0045 0.1299 1.0103 37 1 3.7442 -0.8174 3.3226 38 1 3.7164 -2.4498 2.6137 39 1 5.9616 -1.9887 1.5849 40 1 5.7977 0.5298 3.3017 41 1 7.2314 -0.0220 2.4029 42 1 5.7687 0.4827 1.5227 43 1 5.7680 -3.1645 3.7594 44 1 7.2310 -2.1515 3.7089 45 1 5.7973 -1.6001 4.6079 46 1 3.2924 -2.4112 -0.2399 47 1 3.6114 -3.5735 -1.6116 48 1 4.2096 -5.0688 -3.4489 49 1 4.8393 -7.7053 -3.9722 50 1 8.0626 -3.1555 -3.7328 51 1 7.4546 -1.6752 -1.8866 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000536104905.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:18 Heat of formation + Delta-G solvation = -71.354487 kcal Electronic energy + Delta-G solvation = -27390.972604 eV Core-core repulsion = 23866.791815 eV Total energy + Delta-G solvation = -3524.180788 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.14840 -39.29370 -37.97852 -36.63861 -35.61675 -34.71198 -32.23422 -31.28297 -30.64159 -28.08066 -27.91271 -27.57487 -27.15807 -24.06758 -22.88039 -22.49486 -21.20667 -20.88550 -20.46218 -19.34448 -18.29526 -17.38429 -16.94940 -16.60901 -15.91446 -15.71586 -15.56580 -15.15798 -15.08500 -14.97288 -14.61825 -14.43280 -14.35052 -13.86684 -13.68903 -13.40930 -13.34145 -13.18698 -13.01393 -12.94847 -12.94099 -12.83550 -12.59285 -12.47915 -12.41153 -12.33534 -12.05266 -11.72886 -11.65155 -11.50255 -11.42345 -11.35722 -11.27043 -11.10714 -11.03167 -10.40370 -9.76212 -9.54269 -9.34810 -8.76305 -6.46817 0.50771 1.16470 1.38643 1.42103 1.54440 2.16414 2.24510 2.56210 2.85265 3.65716 3.72384 3.97530 4.05054 4.13885 4.19510 4.25674 4.31856 4.36011 4.46090 4.47750 4.60103 4.67778 4.79073 4.82184 4.86124 4.87491 4.92599 4.94447 4.95099 5.01816 5.04430 5.04878 5.09304 5.12929 5.15912 5.20222 5.25265 5.32729 5.37554 5.45043 5.49519 5.54128 5.59855 5.62295 5.71123 5.83335 5.89362 5.99318 6.01984 6.25652 6.56675 6.79616 6.85900 6.93046 7.65037 8.18722 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.013749 B = 0.003371 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.024342 B = 8305.175091 C = 9330.081713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.099 4.099 3 C -0.146 4.146 4 C -0.113 4.113 5 C 0.141 3.859 6 C -0.118 4.118 7 C -0.099 4.099 8 C -0.128 4.128 9 C -0.142 4.142 10 N -0.718 5.718 11 C 0.572 3.428 12 O -0.579 6.579 13 C -0.286 4.286 14 C -0.056 4.056 15 C -0.197 4.197 16 C 0.100 3.900 17 C -0.479 4.479 18 H 0.082 0.918 19 C 0.038 3.962 20 N -0.803 5.803 21 Si 0.986 3.014 22 H -0.258 1.258 23 H -0.264 1.264 24 H -0.260 1.260 25 C -0.254 4.254 26 C -0.034 4.034 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.051 0.949 30 H 0.053 0.947 31 H 0.038 0.962 32 H 0.050 0.950 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.094 0.906 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.064 0.936 39 H 0.044 0.956 40 H 0.057 0.943 41 H 0.028 0.972 42 H 0.055 0.945 43 H 0.050 0.950 44 H 0.042 0.958 45 H 0.068 0.932 46 H 0.401 0.599 47 H 0.121 0.879 48 H 0.113 0.887 49 H 0.295 0.705 50 H 0.100 0.900 51 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.083 7.137 9.985 15.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.118 4.118 3 C -0.204 4.204 4 C -0.151 4.151 5 C 0.037 3.963 6 C -0.157 4.157 7 C -0.118 4.118 8 C -0.185 4.185 9 C -0.199 4.199 10 N -0.369 5.369 11 C 0.365 3.635 12 O -0.463 6.463 13 C -0.291 4.291 14 C -0.075 4.075 15 C -0.216 4.216 16 C 0.097 3.903 17 C -0.507 4.507 18 H 0.100 0.900 19 C -0.180 4.180 20 N -0.427 5.427 21 Si 0.806 3.194 22 H -0.182 1.182 23 H -0.189 1.189 24 H -0.184 1.184 25 C -0.274 4.274 26 C -0.054 4.054 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.087 0.913 34 H 0.095 0.905 35 H 0.113 0.887 36 H 0.094 0.906 37 H 0.106 0.894 38 H 0.082 0.918 39 H 0.063 0.937 40 H 0.076 0.924 41 H 0.048 0.952 42 H 0.074 0.926 43 H 0.069 0.931 44 H 0.061 0.939 45 H 0.087 0.913 46 H 0.237 0.763 47 H 0.138 0.862 48 H 0.130 0.870 49 H 0.107 0.893 50 H 0.118 0.882 51 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -9.685 7.529 10.380 16.070 hybrid contribution 0.340 -0.922 -1.039 1.430 sum -9.345 6.607 9.341 14.773 Atomic orbital electron populations 1.21796 0.93929 1.02150 1.02021 1.21099 0.96493 0.96167 0.98020 1.21861 1.00184 0.96250 1.02074 1.21918 0.92295 1.01876 0.99016 1.21213 0.95677 0.93821 0.85574 1.22036 0.94566 1.01660 0.97400 1.21116 0.96007 0.96918 0.97714 1.21709 0.99349 0.96284 1.01126 1.21817 1.00252 1.00134 0.97684 1.45858 1.16287 1.38662 1.36126 1.18175 0.81561 0.82470 0.81279 1.90627 1.51333 1.38528 1.65780 1.19338 0.98296 1.05934 1.05484 1.20731 0.97537 0.93577 0.95668 1.21023 0.97229 1.02311 1.01046 1.18122 0.91009 0.90319 0.90811 1.20102 1.20749 1.00306 1.09516 0.90026 1.26879 0.91910 0.98167 1.01037 1.69762 1.24153 1.17096 1.31662 0.85088 0.79600 0.77773 0.76918 1.18179 1.18876 1.18395 1.20855 0.99777 1.03914 1.02825 1.20492 0.94965 0.95959 0.93950 0.92272 0.91645 0.93004 0.92862 0.94332 0.93040 0.91310 0.90484 0.88723 0.90560 0.89403 0.91754 0.93719 0.92435 0.95233 0.92568 0.93115 0.93910 0.91347 0.76333 0.86157 0.86955 0.89348 0.88220 0.88012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 9.19 71.98 0.66 -1.54 16 2 C -0.10 -1.92 2.87 -10.79 -0.03 -1.95 16 3 C -0.15 -2.93 8.97 71.98 0.65 -2.28 16 4 C -0.11 -2.01 4.20 30.59 0.13 -1.89 16 5 C 0.14 3.45 2.06 44.99 0.09 3.54 16 6 C -0.12 -2.73 4.36 30.60 0.13 -2.60 16 7 C -0.10 -2.87 2.38 -10.79 -0.03 -2.89 16 8 C -0.13 -3.73 8.03 71.98 0.58 -3.15 16 9 C -0.14 -3.49 9.19 71.98 0.66 -2.83 16 10 N -0.72 -21.66 4.39 -445.58 -1.96 -23.61 16 11 C 0.57 22.63 6.32 86.73 0.55 23.18 16 12 O -0.58 -24.93 11.28 -3.98 -0.04 -24.97 16 13 C -0.29 -12.84 5.89 -19.93 -0.12 -12.96 16 14 C -0.06 -2.46 9.47 22.25 0.21 -2.25 16 15 C -0.20 -9.81 8.63 22.47 0.19 -9.61 16 16 C 0.10 5.29 5.57 -21.27 -0.12 5.17 16 17 C -0.48 -24.68 9.05 23.46 0.21 -24.47 16 18 H 0.08 4.07 7.90 -2.91 -0.02 4.04 16 19 C 0.04 1.80 5.17 85.35 0.44 2.25 16 20 N -0.80 -38.89 10.89 21.87 0.24 -38.65 16 21 Si 0.99 35.42 29.59 68.60 2.03 37.45 16 22 H -0.26 -9.21 7.11 99.48 0.71 -8.50 16 23 H -0.26 -9.10 7.11 99.48 0.71 -8.40 16 24 H -0.26 -8.86 7.11 99.48 0.71 -8.15 16 25 C -0.25 -12.80 9.73 22.47 0.22 -12.58 16 26 C -0.03 -1.66 9.52 22.25 0.21 -1.44 16 27 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.05 1.27 7.64 -2.39 -0.02 1.25 16 31 H 0.04 0.93 6.47 -2.39 -0.02 0.92 16 32 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.08 2.17 4.12 -2.39 -0.01 2.16 16 37 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.04 1.67 5.19 -2.39 -0.01 1.66 16 40 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 41 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.06 1.87 4.75 -2.39 -0.01 1.85 16 43 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 45 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 46 H 0.40 10.99 6.60 -92.71 -0.61 10.38 16 47 H 0.12 4.33 6.37 -2.91 -0.02 4.31 16 48 H 0.11 5.71 6.13 -2.91 -0.02 5.69 16 49 H 0.30 12.69 8.29 -92.71 -0.77 11.92 16 50 H 0.10 4.77 8.06 -2.91 -0.02 4.74 16 51 H 0.10 4.75 7.63 -2.91 -0.02 4.73 16 Total: -1.00 -58.70 391.23 5.21 -53.49 By element: Atomic # 1 Polarization: 44.31 SS G_CDS: 0.30 Total: 44.60 kcal Atomic # 6 Polarization: -52.95 SS G_CDS: 4.65 Total: -48.31 kcal Atomic # 7 Polarization: -60.55 SS G_CDS: -1.72 Total: -62.27 kcal Atomic # 8 Polarization: -24.93 SS G_CDS: -0.04 Total: -24.97 kcal Atomic # 14 Polarization: 35.42 SS G_CDS: 2.03 Total: 37.45 kcal Total: -58.70 5.21 -53.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000536104905.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.866 kcal (2) G-P(sol) polarization free energy of solvation -58.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds