Wall clock time and date at job start Tue Mar 31 2020 11:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00035 * 2 1 4 4 H 1.48499 * 109.47220 * 240.00384 * 3 2 1 5 5 H 1.48500 * 109.47013 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46812 * 120.00675 * 3 2 1 7 7 C 1.37878 * 120.00171 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00507 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99934 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47313 * 180.02562 * 9 7 2 11 11 N 1.46902 * 109.47066 * 180.02562 * 10 9 7 12 12 C 1.46896 * 110.99794 * 180.02562 * 11 10 9 13 13 C 1.50705 * 109.47265 * 179.97438 * 12 11 10 14 14 C 1.38287 * 119.96934 * 270.01919 * 13 12 11 15 15 C 1.38248 * 120.10851 * 180.02562 * 14 13 12 16 16 C 1.38158 * 120.05474 * 359.67964 * 15 14 13 17 17 C 1.38712 * 119.94828 * 0.57353 * 16 15 14 18 18 O 1.35898 * 120.05946 * 179.71931 * 17 16 15 19 19 C 1.42894 * 116.99927 * 359.73028 * 18 17 16 20 20 C 1.53002 * 109.47240 * 179.97438 * 19 18 17 21 21 C 1.52997 * 109.46817 * 64.99822 * 20 19 18 22 22 C 1.52999 * 109.47317 * 179.97438 * 21 20 19 23 23 C 1.53005 * 109.47159 * 300.00546 * 22 21 20 24 24 C 1.52997 * 109.47452 * 59.99536 * 23 22 21 25 25 C 1.53000 * 109.47233 * 184.99627 * 20 19 18 26 26 C 1.38119 * 119.97274 * 89.99408 * 13 12 11 27 27 H 0.96998 * 119.99975 * 359.97438 * 1 2 3 28 28 H 1.09006 * 109.46667 * 60.00539 * 9 7 2 29 29 H 1.08997 * 109.47134 * 300.00974 * 9 7 2 30 30 H 1.08992 * 109.47314 * 60.00129 * 10 9 7 31 31 H 1.08999 * 109.46835 * 300.00175 * 10 9 7 32 32 H 1.00902 * 110.99890 * 303.95017 * 11 10 9 33 33 H 1.08997 * 109.47637 * 59.99327 * 12 11 10 34 34 H 1.09006 * 109.47105 * 299.99269 * 12 11 10 35 35 H 1.08004 * 119.94799 * 359.97438 * 14 13 12 36 36 H 1.07999 * 119.96785 * 179.97438 * 15 14 13 37 37 H 1.08003 * 120.02744 * 180.29971 * 16 15 14 38 38 H 1.09008 * 109.47321 * 59.99692 * 19 18 17 39 39 H 1.08997 * 109.47221 * 299.99622 * 19 18 17 40 40 H 1.09002 * 109.47070 * 305.00002 * 20 19 18 41 41 H 1.08996 * 109.47853 * 300.00202 * 21 20 19 42 42 H 1.09002 * 109.47153 * 60.00231 * 21 20 19 43 43 H 1.09000 * 109.47486 * 180.02562 * 22 21 20 44 44 H 1.09002 * 109.46716 * 60.00091 * 22 21 20 45 45 H 1.09002 * 109.46935 * 299.99411 * 23 22 21 46 46 H 1.09001 * 109.46812 * 179.97438 * 23 22 21 47 47 H 1.08993 * 109.47194 * 179.97438 * 24 23 22 48 48 H 1.09002 * 109.46695 * 59.99734 * 24 23 22 49 49 H 1.08992 * 109.47399 * 300.00166 * 25 20 19 50 50 H 1.09004 * 109.46724 * 60.00652 * 25 20 19 51 51 H 1.07999 * 120.02746 * 0.02646 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1030 1.6962 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5107 -4.9343 -0.0012 12 6 2.4352 -6.0759 -0.0006 13 6 1.6472 -7.3605 -0.0006 14 6 1.2852 -7.9489 1.1974 15 6 0.5627 -9.1275 1.2007 16 6 0.1950 -9.7171 0.0066 17 6 0.5614 -9.1317 -1.1964 18 8 0.2057 -9.7127 -2.3724 19 6 -0.5404 -10.9290 -2.2955 20 6 -0.8472 -11.4293 -3.7084 21 6 0.4594 -11.7997 -4.4131 22 6 0.1526 -12.3007 -5.8259 23 6 -0.7505 -13.5331 -5.7451 24 6 -2.0571 -13.1627 -5.0404 25 6 -1.7505 -12.6616 -3.6282 26 6 1.2867 -7.9489 -1.1971 27 1 -0.4850 0.8400 0.0004 28 1 0.6241 -2.5567 -0.8904 29 1 0.6246 -2.5571 0.8896 30 1 2.8719 -3.6044 0.8894 31 1 2.8719 -3.6043 -0.8905 32 1 0.8741 -4.9846 0.7800 33 1 3.0626 -6.0350 0.8898 34 1 3.0638 -6.0349 -0.8902 35 1 1.5680 -7.4872 2.1319 36 1 0.2816 -9.5853 2.1376 37 1 -0.3736 -10.6353 0.0097 38 1 -1.4745 -10.7492 -1.7632 39 1 0.0428 -11.6799 -1.7624 40 1 -1.3530 -10.6440 -4.2701 41 1 1.1030 -10.9219 -4.4703 42 1 0.9651 -12.5851 -3.8514 43 1 1.0834 -12.5650 -6.3278 44 1 -0.3534 -11.5156 -6.3878 45 1 -0.2445 -14.3181 -5.1832 46 1 -0.9694 -13.8897 -6.7517 47 1 -2.7006 -14.0405 -4.9834 48 1 -2.5630 -12.3776 -5.6024 49 1 -1.2447 -13.4469 -3.0666 50 1 -2.6813 -12.3976 -3.1262 51 1 1.5697 -7.4889 -2.1324 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000541380499.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:33 Heat of formation + Delta-G solvation = -70.854554 kcal Electronic energy + Delta-G solvation = -25267.474207 eV Core-core repulsion = 21743.315097 eV Total energy + Delta-G solvation = -3524.159110 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.22850 -39.70753 -38.53080 -37.15524 -35.07859 -33.14261 -32.87684 -31.65221 -31.04658 -30.33352 -27.36910 -26.69961 -24.98500 -23.67382 -23.33819 -22.64233 -22.46124 -21.43363 -20.67504 -18.73332 -18.47624 -17.25466 -17.03830 -16.89039 -16.66700 -16.38710 -16.10067 -15.61382 -15.22413 -15.05722 -15.00745 -14.96052 -14.60836 -14.21822 -14.16496 -13.85445 -13.54121 -13.40593 -13.14900 -13.05832 -12.92488 -12.81732 -12.65294 -12.53137 -12.39837 -12.14709 -12.02254 -11.92937 -11.75151 -11.67452 -11.41109 -11.35028 -11.26674 -11.05187 -10.90389 -10.56111 -9.84063 -9.32524 -9.10583 -8.19978 -6.31971 0.34212 0.51231 1.40510 1.44216 1.52127 2.21617 2.40821 2.76148 3.13158 3.51835 3.64592 3.73809 3.83305 3.88292 3.91837 4.14205 4.15047 4.21748 4.27020 4.37527 4.39047 4.41430 4.49707 4.50196 4.54913 4.60673 4.62181 4.64252 4.69042 4.72021 4.78659 4.86714 5.00458 5.05783 5.08705 5.16395 5.23874 5.24016 5.27990 5.34392 5.38936 5.43505 5.44873 5.48979 5.56550 5.64936 5.67850 5.77064 5.84782 6.11790 6.25088 6.49815 6.51031 6.85082 7.37237 8.92039 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.018256 B = 0.001849 C = 0.001753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.356665 B =15140.307050 C =15972.608706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.001 4.001 3 Si 0.969 3.031 4 H -0.267 1.267 5 H -0.283 1.283 6 H -0.265 1.265 7 C -0.546 4.546 8 H 0.062 0.938 9 C 0.031 3.969 10 C 0.084 3.916 11 N -0.694 5.694 12 C 0.099 3.901 13 C -0.047 4.047 14 C -0.160 4.160 15 C -0.079 4.079 16 C -0.211 4.211 17 C 0.118 3.882 18 O -0.330 6.330 19 C 0.059 3.941 20 C -0.083 4.083 21 C -0.112 4.112 22 C -0.121 4.121 23 C -0.119 4.119 24 C -0.118 4.118 25 C -0.108 4.108 26 C -0.153 4.153 27 H 0.264 0.736 28 H -0.008 1.008 29 H -0.008 1.008 30 H 0.025 0.975 31 H 0.059 0.941 32 H 0.339 0.661 33 H 0.049 0.951 34 H 0.077 0.923 35 H 0.133 0.867 36 H 0.153 0.847 37 H 0.149 0.851 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.050 0.950 42 H 0.066 0.934 43 H 0.064 0.936 44 H 0.055 0.945 45 H 0.066 0.934 46 H 0.066 0.934 47 H 0.075 0.925 48 H 0.058 0.942 49 H 0.074 0.926 50 H 0.071 0.929 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.329 -32.447 -4.864 32.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.199 4.199 3 Si 0.793 3.207 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.190 1.190 7 C -0.584 4.584 8 H 0.081 0.919 9 C -0.007 4.007 10 C -0.045 4.045 11 N -0.325 5.325 12 C -0.029 4.029 13 C -0.048 4.048 14 C -0.179 4.179 15 C -0.096 4.096 16 C -0.229 4.229 17 C 0.073 3.927 18 O -0.244 6.244 19 C -0.016 4.016 20 C -0.102 4.102 21 C -0.149 4.149 22 C -0.158 4.158 23 C -0.156 4.156 24 C -0.156 4.156 25 C -0.145 4.145 26 C -0.172 4.172 27 H 0.073 0.927 28 H 0.010 0.990 29 H 0.010 0.990 30 H 0.043 0.957 31 H 0.078 0.922 32 H 0.157 0.843 33 H 0.068 0.932 34 H 0.095 0.905 35 H 0.151 0.849 36 H 0.171 0.829 37 H 0.167 0.833 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.086 0.914 41 H 0.069 0.931 42 H 0.085 0.915 43 H 0.083 0.917 44 H 0.074 0.926 45 H 0.085 0.915 46 H 0.085 0.915 47 H 0.094 0.906 48 H 0.076 0.924 49 H 0.092 0.908 50 H 0.090 0.910 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -1.510 -32.285 -5.759 32.829 hybrid contribution 0.414 1.208 0.874 1.547 sum -1.095 -31.077 -4.886 31.477 Atomic orbital electron populations 1.70110 1.07884 1.27886 1.51323 1.26014 0.95797 1.03494 0.94594 0.85442 0.78199 0.77803 0.79226 1.19188 1.20816 1.18987 1.21591 0.93607 0.92161 1.51070 0.91949 1.18928 0.94348 0.92373 0.95022 1.21808 0.95614 0.87990 0.99060 1.60534 1.20134 1.01471 1.50355 1.20899 0.93331 0.87030 1.01679 1.19618 0.97298 0.95013 0.92825 1.21205 1.01706 0.97434 0.97507 1.21229 0.95481 0.94458 0.98480 1.21477 1.06408 1.03405 0.91658 1.19076 0.95257 0.92928 0.85468 1.86047 1.70282 1.39816 1.28266 1.23084 0.95315 0.83919 0.99233 1.21177 0.97305 0.98208 0.93461 1.21524 0.96395 1.00590 0.96414 1.21545 0.99952 0.98072 0.96253 1.21552 0.95844 0.97347 1.00896 1.21512 0.97485 1.01277 0.95314 1.21484 0.99060 0.95949 0.98043 1.20342 1.02822 0.95368 0.98689 0.92737 0.98969 0.98976 0.95727 0.92249 0.84307 0.93244 0.90470 0.84863 0.82928 0.83347 0.91280 0.90857 0.91391 0.93139 0.91534 0.91705 0.92601 0.91530 0.91481 0.90625 0.92352 0.90758 0.91007 0.86434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.03 13.29 21.45 0.28 -57.74 16 2 C 0.00 -0.06 5.46 84.66 0.46 0.40 16 3 Si 0.97 44.87 29.54 68.60 2.03 46.90 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 6 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 7 C -0.55 -31.80 9.11 25.60 0.23 -31.57 16 8 H 0.06 3.44 7.74 -2.91 -0.02 3.42 16 9 C 0.03 1.69 5.23 29.85 0.16 1.85 16 10 C 0.08 3.64 5.62 86.30 0.49 4.12 16 11 N -0.69 -26.07 6.49 -517.94 -3.36 -29.43 16 12 C 0.10 2.98 5.81 85.56 0.50 3.48 16 13 C -0.05 -1.31 5.39 -19.88 -0.11 -1.42 16 14 C -0.16 -3.78 9.70 22.28 0.22 -3.57 16 15 C -0.08 -1.57 10.04 22.25 0.22 -1.35 16 16 C -0.21 -4.36 9.04 22.36 0.20 -4.16 16 17 C 0.12 3.03 6.69 22.51 0.15 3.18 16 18 O -0.33 -8.02 9.67 -92.40 -0.89 -8.91 16 19 C 0.06 0.96 4.12 71.98 0.30 1.26 16 20 C -0.08 -1.20 2.43 -10.79 -0.03 -1.22 16 21 C -0.11 -1.67 5.10 30.59 0.16 -1.51 16 22 C -0.12 -1.54 5.92 30.60 0.18 -1.36 16 23 C -0.12 -1.18 5.92 30.60 0.18 -1.00 16 24 C -0.12 -1.13 5.92 30.58 0.18 -0.95 16 25 C -0.11 -1.08 5.20 30.58 0.16 -0.92 16 26 C -0.15 -4.45 9.64 22.37 0.22 -4.24 16 27 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 28 H -0.01 -0.50 8.14 -2.38 -0.02 -0.52 16 29 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 30 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 32 H 0.34 12.47 8.72 -89.69 -0.78 11.69 16 33 H 0.05 1.35 8.08 -2.39 -0.02 1.34 16 34 H 0.08 2.31 8.09 -2.38 -0.02 2.29 16 35 H 0.13 2.75 8.06 -2.91 -0.02 2.73 16 36 H 0.15 2.07 8.06 -2.91 -0.02 2.04 16 37 H 0.15 2.21 6.30 -2.91 -0.02 2.19 16 38 H 0.07 1.00 7.65 -2.38 -0.02 0.98 16 39 H 0.07 0.99 7.67 -2.39 -0.02 0.97 16 40 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.05 0.96 7.82 -2.39 -0.02 0.94 16 42 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 44 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 45 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 46 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 47 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 48 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 49 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 50 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 51 H 0.12 3.59 8.06 -2.91 -0.02 3.57 16 Total: -1.00 -67.97 405.20 2.01 -65.96 By element: Atomic # 1 Polarization: 22.11 SS G_CDS: 0.09 Total: 22.20 kcal Atomic # 6 Polarization: -42.84 SS G_CDS: 3.86 Total: -38.98 kcal Atomic # 7 Polarization: -84.09 SS G_CDS: -3.08 Total: -87.17 kcal Atomic # 8 Polarization: -8.02 SS G_CDS: -0.89 Total: -8.91 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -67.97 2.01 -65.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541380499.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.899 kcal (2) G-P(sol) polarization free energy of solvation -67.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds