Wall clock time and date at job start Tue Mar 31 2020 11:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38261 * 119.97207 * 2 1 4 4 C 1.38270 * 120.11106 * 180.02562 * 3 2 1 5 5 C 1.50697 * 119.97222 * 180.02562 * 4 3 2 6 6 C 1.38143 * 120.05378 * 359.97438 * 4 3 2 7 7 C 1.38735 * 119.94455 * 359.97438 * 6 4 3 8 8 O 1.35903 * 120.05503 * 179.72940 * 7 6 4 9 9 C 1.42895 * 117.00049 * 179.97438 * 8 7 6 10 10 C 1.53003 * 109.47110 * 179.97438 * 9 8 7 11 11 C 1.53003 * 109.46803 * 180.02562 * 10 9 8 12 12 N 1.46909 * 109.46726 * 180.02562 * 11 10 9 13 13 C 1.46846 * 110.99666 * 294.20729 * 12 11 10 14 14 C 1.53037 * 109.52400 * 174.16666 * 13 12 11 15 15 C 1.53115 * 109.28166 * 59.17456 * 14 13 12 16 16 C 1.50701 * 109.57632 * 182.41166 * 15 14 13 17 17 H 1.07999 * 119.99371 * 119.71426 * 16 15 14 18 18 C 1.37875 * 120.00064 * 299.71533 * 16 15 14 19 19 N 1.31517 * 120.00036 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99744 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.47249 * 60.00490 * 20 18 16 22 22 H 1.48499 * 109.46713 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47318 * 300.00026 * 20 18 16 24 24 C 1.53116 * 109.16166 * 302.35208 * 15 14 13 25 25 C 1.46847 * 110.99650 * 170.00272 * 12 11 10 26 26 C 1.38146 * 119.97000 * 179.97438 * 2 1 3 27 27 H 1.08998 * 109.47217 * 89.99225 * 1 2 3 28 28 H 1.09002 * 109.47236 * 209.99803 * 1 2 3 29 29 H 1.08996 * 109.46954 * 329.99473 * 1 2 3 30 30 H 1.08000 * 119.94423 * 0.02562 * 3 2 1 31 31 H 1.09001 * 109.47019 * 269.98055 * 5 4 3 32 32 H 1.08993 * 109.47146 * 29.98173 * 5 4 3 33 33 H 1.09003 * 109.46814 * 149.98361 * 5 4 3 34 34 H 1.08000 * 120.02832 * 179.97438 * 6 4 3 35 35 H 1.09000 * 109.47202 * 299.99846 * 9 8 7 36 36 H 1.08999 * 109.47281 * 59.99918 * 9 8 7 37 37 H 1.09000 * 109.47280 * 300.00187 * 10 9 8 38 38 H 1.08996 * 109.47063 * 60.00458 * 10 9 8 39 39 H 1.08995 * 109.47326 * 299.99600 * 11 10 9 40 40 H 1.08999 * 109.47532 * 60.00342 * 11 10 9 41 41 H 1.09002 * 109.46145 * 294.17939 * 13 12 11 42 42 H 1.08997 * 109.46712 * 54.14538 * 13 12 11 43 43 H 1.09003 * 109.49712 * 299.23634 * 14 13 12 44 44 H 1.08998 * 109.50307 * 179.12425 * 14 13 12 45 45 H 1.08999 * 109.51875 * 62.25672 * 15 14 13 46 46 H 0.96990 * 119.99906 * 179.97438 * 19 18 16 47 47 H 1.08999 * 109.50320 * 297.71089 * 24 15 14 48 48 H 1.09001 * 109.50778 * 177.59231 * 24 15 14 49 49 H 1.09002 * 109.46008 * 305.84879 * 25 12 11 50 50 H 1.08998 * 109.46557 * 65.83223 * 25 12 11 51 51 H 1.07998 * 120.02730 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1978 1.1977 0.0000 4 6 3.5805 1.2011 -0.0005 5 6 4.3302 2.5083 0.0001 6 6 4.2752 0.0070 -0.0005 7 6 3.5844 -1.1961 0.0005 8 8 4.2656 -2.3721 -0.0050 9 6 3.4891 -3.5716 -0.0029 10 6 4.4228 -4.7836 -0.0105 11 6 3.5913 -6.0680 -0.0090 12 7 4.4879 -7.2317 -0.0156 13 6 5.2482 -7.3030 -1.2699 14 6 6.2721 -8.4371 -1.1836 15 6 5.5421 -9.7593 -0.9316 16 6 6.5482 -10.8718 -0.7865 17 1 6.5970 -11.4393 0.1311 18 6 7.4062 -11.1652 -1.8251 19 7 7.3470 -10.4738 -2.9423 20 14 8.6537 -12.5439 -1.6448 21 1 7.9441 -13.8238 -1.3934 22 1 9.4509 -12.6562 -2.8927 23 1 9.5583 -12.2471 -0.5051 24 6 4.7197 -9.6420 0.3546 25 6 3.7407 -8.4730 0.2236 26 6 2.1972 -1.1967 0.0005 27 1 -0.3633 0.0001 -1.0276 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5139 30 1 1.6564 2.1322 0.0004 31 1 4.5108 2.8240 -1.0275 32 1 3.7390 3.2660 0.5143 33 1 5.2830 2.3804 0.5137 34 1 5.3552 0.0101 -0.0014 35 1 2.8650 -3.5989 0.8903 36 1 2.8556 -3.5959 -0.8896 37 1 5.0466 -4.7562 -0.9040 38 1 5.0565 -4.7596 0.8760 39 1 2.9673 -6.0957 0.8842 40 1 2.9579 -6.0919 -0.8957 41 1 4.5654 -7.4925 -2.0982 42 1 5.7659 -6.3581 -1.4351 43 1 6.9637 -8.2413 -0.3641 44 1 6.8256 -8.4998 -2.1205 45 1 4.8791 -9.9747 -1.7696 46 1 7.9508 -10.6800 -3.6727 47 1 5.3868 -9.4652 1.1983 48 1 4.1639 -10.5656 0.5167 49 1 3.1635 -8.3779 1.1433 50 1 3.0652 -8.6571 -0.6118 51 1 1.6571 -2.1320 0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000541948140.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:51 Heat of formation + Delta-G solvation = -53.621207 kcal Electronic energy + Delta-G solvation = -25724.022744 eV Core-core repulsion = 22200.610928 eV Total energy + Delta-G solvation = -3523.411816 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.21651 -39.93931 -38.85028 -36.24127 -34.48450 -34.22811 -32.46636 -31.48975 -31.29314 -28.28488 -28.06898 -27.61615 -25.81989 -24.03738 -23.47055 -22.67213 -22.02392 -21.25449 -20.36204 -18.54080 -18.40950 -17.33052 -17.29355 -16.91157 -16.72606 -16.24883 -15.88631 -15.31513 -14.98091 -14.82326 -14.77121 -14.52308 -14.35943 -14.20905 -14.07415 -14.00041 -13.90546 -13.33765 -13.17747 -13.04568 -12.85694 -12.81752 -12.68787 -12.54664 -12.40432 -12.32837 -12.14994 -12.03494 -11.91234 -11.84351 -11.69427 -11.47186 -11.26782 -10.80411 -10.63275 -10.37194 -9.58453 -9.20074 -9.11501 -8.07882 -6.21303 0.34279 0.47948 1.41036 1.42645 1.50075 2.12342 2.43718 2.74950 3.08011 3.18904 3.77720 3.85132 3.86874 4.03923 4.08959 4.11731 4.22938 4.30332 4.33690 4.35670 4.39323 4.44147 4.49443 4.52919 4.57848 4.66262 4.68361 4.77073 4.80698 4.83323 4.85217 4.87495 4.95856 4.99415 5.03131 5.11271 5.15384 5.20616 5.26841 5.31562 5.35011 5.38004 5.56574 5.57085 5.62739 5.67429 5.90147 6.00271 6.02409 6.28092 6.33604 6.40857 6.47958 6.90333 7.46304 8.96496 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.026701 B = 0.001922 C = 0.001835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.389742 B =14566.457929 C =15255.986258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.051 4.051 3 C -0.169 4.169 4 C -0.049 4.049 5 C -0.113 4.113 6 C -0.184 4.184 7 C 0.119 3.881 8 O -0.334 6.334 9 C 0.068 3.932 10 C -0.109 4.109 11 C 0.063 3.937 12 N -0.544 5.544 13 C 0.067 3.933 14 C -0.096 4.096 15 C 0.043 3.957 16 C -0.533 4.533 17 H 0.051 0.949 18 C 0.010 3.990 19 N -0.918 5.918 20 Si 0.954 3.046 21 H -0.271 1.271 22 H -0.285 1.285 23 H -0.272 1.272 24 C -0.101 4.101 25 C 0.067 3.933 26 C -0.228 4.228 27 H 0.080 0.920 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.144 0.856 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.071 0.929 34 H 0.127 0.873 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.060 0.940 38 H 0.073 0.927 39 H 0.095 0.905 40 H 0.037 0.963 41 H 0.014 0.986 42 H 0.072 0.928 43 H 0.029 0.971 44 H 0.060 0.940 45 H -0.012 1.012 46 H 0.260 0.740 47 H 0.051 0.949 48 H 0.055 0.945 49 H 0.092 0.908 50 H 0.023 0.977 51 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.964 25.206 6.580 29.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.051 4.051 3 C -0.187 4.187 4 C -0.050 4.050 5 C -0.170 4.170 6 C -0.202 4.202 7 C 0.074 3.926 8 O -0.248 6.248 9 C -0.007 4.007 10 C -0.147 4.147 11 C -0.065 4.065 12 N -0.269 5.269 13 C -0.061 4.061 14 C -0.134 4.134 15 C 0.024 3.976 16 C -0.572 4.572 17 H 0.070 0.930 18 C -0.188 4.188 19 N -0.558 5.558 20 Si 0.779 3.221 21 H -0.196 1.196 22 H -0.210 1.210 23 H -0.198 1.198 24 C -0.138 4.138 25 C -0.061 4.061 26 C -0.247 4.247 27 H 0.099 0.901 28 H 0.091 0.909 29 H 0.101 0.899 30 H 0.162 0.838 31 H 0.099 0.901 32 H 0.102 0.898 33 H 0.090 0.910 34 H 0.145 0.855 35 H 0.096 0.904 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.092 0.908 39 H 0.113 0.887 40 H 0.055 0.945 41 H 0.033 0.967 42 H 0.090 0.910 43 H 0.048 0.952 44 H 0.078 0.922 45 H 0.006 0.994 46 H 0.069 0.931 47 H 0.069 0.931 48 H 0.073 0.927 49 H 0.110 0.890 50 H 0.041 0.959 51 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -13.347 25.217 6.791 29.329 hybrid contribution 0.377 -1.358 -1.024 1.742 sum -12.970 23.859 5.767 27.762 Atomic orbital electron populations 1.20872 0.89064 1.03873 1.03279 1.20072 0.97481 0.92180 0.95366 1.21137 0.93444 0.98404 1.05736 1.20026 0.94189 0.95075 0.95661 1.20862 1.00117 0.92628 1.03358 1.20503 1.00498 0.89945 1.09285 1.19261 0.91296 0.85898 0.96169 1.86034 1.37100 1.13068 1.88620 1.22772 0.93993 0.81542 1.02410 1.21420 0.98413 0.91396 1.03445 1.21956 0.93861 0.88800 1.01870 1.61891 1.27000 1.03134 1.34867 1.22078 0.95788 0.99051 0.89183 1.21423 0.97087 0.94303 1.00615 1.18670 0.93423 0.93040 0.92443 1.21569 1.18390 1.17021 1.00178 0.93049 1.25768 0.99263 0.98733 0.95063 1.70011 1.39151 1.41478 1.05144 0.85679 0.79136 0.79908 0.77333 1.19617 1.21003 1.19751 1.21552 0.97361 0.96325 0.98609 1.22059 0.94601 0.89087 1.00345 1.21320 0.92524 1.00013 1.10808 0.90149 0.90945 0.89938 0.83836 0.90054 0.89756 0.91038 0.85527 0.90373 0.91269 0.92083 0.90819 0.88685 0.94471 0.96735 0.90984 0.95235 0.92200 0.99410 0.93117 0.93059 0.92676 0.88986 0.95888 0.84548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.21 10.01 71.24 0.71 -0.50 16 2 C -0.05 -0.85 5.88 -19.88 -0.12 -0.97 16 3 C -0.17 -2.68 9.35 22.28 0.21 -2.47 16 4 C -0.05 -0.86 5.88 -19.88 -0.12 -0.98 16 5 C -0.11 -1.26 10.01 71.23 0.71 -0.55 16 6 C -0.18 -4.01 9.64 22.37 0.22 -3.79 16 7 C 0.12 2.82 6.69 22.51 0.15 2.97 16 8 O -0.33 -8.62 10.14 -92.45 -0.94 -9.56 16 9 C 0.07 1.42 4.74 71.98 0.34 1.77 16 10 C -0.11 -2.68 5.51 30.60 0.17 -2.51 16 11 C 0.06 1.59 4.96 86.30 0.43 2.01 16 12 N -0.54 -18.49 4.66 -896.33 -4.17 -22.67 16 13 C 0.07 2.64 5.29 86.33 0.46 3.10 16 14 C -0.10 -4.72 5.12 30.65 0.16 -4.56 16 15 C 0.04 2.20 2.16 -11.46 -0.02 2.18 16 16 C -0.53 -30.21 8.56 25.60 0.22 -29.99 16 17 H 0.05 2.85 7.74 -2.91 -0.02 2.83 16 18 C 0.01 0.57 5.31 84.65 0.45 1.02 16 19 N -0.92 -54.19 11.37 21.45 0.24 -53.95 16 20 Si 0.95 44.56 29.54 68.60 2.03 46.58 16 21 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 22 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 23 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 24 C -0.10 -4.22 5.32 30.65 0.16 -4.06 16 25 C 0.07 2.26 5.46 86.33 0.47 2.74 16 26 C -0.23 -4.53 8.69 22.36 0.19 -4.34 16 27 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.07 0.70 8.08 -2.39 -0.02 0.68 16 29 H 0.08 0.64 8.08 -2.39 -0.02 0.62 16 30 H 0.14 1.53 8.06 -2.91 -0.02 1.51 16 31 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.08 0.66 8.08 -2.39 -0.02 0.65 16 33 H 0.07 0.76 8.08 -2.39 -0.02 0.74 16 34 H 0.13 2.66 8.06 -2.91 -0.02 2.63 16 35 H 0.08 1.37 7.67 -2.39 -0.02 1.35 16 36 H 0.07 1.31 7.65 -2.39 -0.02 1.29 16 37 H 0.06 1.69 6.43 -2.39 -0.02 1.67 16 38 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.09 1.97 7.99 -2.39 -0.02 1.95 16 40 H 0.04 0.91 8.12 -2.39 -0.02 0.89 16 41 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 42 H 0.07 2.64 6.21 -2.39 -0.01 2.63 16 43 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 44 H 0.06 3.32 6.17 -2.39 -0.01 3.30 16 45 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 46 H 0.26 14.63 8.31 -92.72 -0.77 13.86 16 47 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 48 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 49 H 0.09 2.54 8.01 -2.39 -0.02 2.52 16 50 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 51 H 0.14 2.30 6.30 -2.91 -0.02 2.28 16 Total: -1.00 -65.66 397.96 2.82 -62.84 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: 0.87 Total: 15.68 kcal Atomic # 6 Polarization: -43.72 SS G_CDS: 4.79 Total: -38.93 kcal Atomic # 7 Polarization: -72.68 SS G_CDS: -3.93 Total: -76.62 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: -0.94 Total: -9.56 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.58 kcal Total: -65.66 2.82 -62.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541948140.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.222 kcal (2) G-P(sol) polarization free energy of solvation -65.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds