Wall clock time and date at job start Tue Mar 31 2020 11:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38141 * 120.02996 * 2 1 4 4 C 1.38274 * 120.05552 * 179.70225 * 3 2 1 5 5 C 1.38261 * 120.10990 * 0.30244 * 4 3 2 6 6 C 1.38149 * 120.05703 * 359.97438 * 5 4 3 7 7 C 1.50701 * 120.02698 * 180.02562 * 6 5 4 8 8 C 1.38729 * 119.94477 * 359.97438 * 6 5 4 9 9 O 1.35898 * 120.05792 * 179.97438 * 8 6 5 10 10 C 1.42898 * 117.00366 * 90.00136 * 9 8 6 11 11 C 1.53001 * 109.47612 * 180.02562 * 10 9 8 12 12 C 1.52993 * 109.46994 * 180.02562 * 11 10 9 13 13 N 1.46909 * 109.46758 * 180.02562 * 12 11 10 14 14 C 1.46851 * 110.99565 * 294.20800 * 13 12 11 15 15 C 1.53039 * 109.52118 * 174.16035 * 14 13 12 16 16 C 1.53121 * 109.27636 * 59.17770 * 15 14 13 17 17 C 1.50699 * 109.57340 * 182.40784 * 16 15 14 18 18 H 1.08005 * 119.99913 * 119.71688 * 17 16 15 19 19 C 1.37884 * 120.00215 * 299.71671 * 17 16 15 20 20 N 1.31508 * 119.99650 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99879 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.46823 * 60.00232 * 21 19 17 23 23 H 1.48502 * 109.46874 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.47148 * 300.00054 * 21 19 17 25 25 C 1.53115 * 109.16412 * 302.34451 * 16 15 14 26 26 C 1.46844 * 111.00059 * 170.00207 * 13 12 11 27 27 H 1.09000 * 109.47072 * 89.98949 * 1 2 3 28 28 H 1.08998 * 109.47473 * 209.99832 * 1 2 3 29 29 H 1.09000 * 109.46857 * 329.99816 * 1 2 3 30 30 H 1.08002 * 119.97550 * 359.97438 * 3 2 1 31 31 H 1.07998 * 119.94363 * 180.27764 * 4 3 2 32 32 H 1.07996 * 119.97484 * 179.97438 * 5 4 3 33 33 H 1.08998 * 109.47189 * 89.99754 * 7 6 5 34 34 H 1.09006 * 109.46628 * 209.99786 * 7 6 5 35 35 H 1.09001 * 109.47332 * 329.99143 * 7 6 5 36 36 H 1.09004 * 109.47027 * 300.00302 * 10 9 8 37 37 H 1.09002 * 109.46890 * 59.99711 * 10 9 8 38 38 H 1.08998 * 109.46611 * 300.00290 * 11 10 9 39 39 H 1.08995 * 109.46797 * 59.99598 * 11 10 9 40 40 H 1.08992 * 109.47270 * 299.99406 * 12 11 10 41 41 H 1.08995 * 109.47685 * 60.00131 * 12 11 10 42 42 H 1.08996 * 109.46433 * 294.17494 * 14 13 12 43 43 H 1.08998 * 109.46374 * 54.15045 * 14 13 12 44 44 H 1.09006 * 109.50268 * 299.24263 * 15 14 13 45 45 H 1.08995 * 109.50532 * 179.12154 * 15 14 13 46 46 H 1.09005 * 109.52220 * 62.25283 * 16 15 14 47 47 H 0.97003 * 120.00029 * 180.02562 * 20 19 17 48 48 H 1.08996 * 109.50812 * 297.71726 * 25 16 15 49 49 H 1.08997 * 109.50773 * 177.59510 * 25 16 15 50 50 H 1.09004 * 109.45788 * 305.85318 * 26 13 12 51 51 H 1.08995 * 109.46623 * 65.82709 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1960 0.0000 4 6 3.5811 1.1966 0.0062 5 6 4.2752 0.0009 0.0061 6 6 3.5885 -1.1979 0.0004 7 6 4.3458 -2.5008 0.0009 8 6 2.2012 -1.2012 -0.0048 9 8 1.5234 -2.3790 -0.0110 10 6 1.1950 -2.9453 1.2592 11 6 0.4398 -4.2597 1.0519 12 6 0.0877 -4.8656 2.4119 13 7 -0.6369 -6.1279 2.2127 14 6 -1.9415 -5.8917 1.5812 15 6 -2.6032 -7.2331 1.2573 16 6 -2.7785 -8.0354 2.5496 17 6 -3.3755 -9.3819 2.2309 18 1 -2.8348 -10.2841 2.4761 19 6 -4.6121 -9.4621 1.6263 20 7 -5.2703 -8.3635 1.3273 21 14 -5.3518 -11.1312 1.2306 22 1 -5.5142 -11.9103 2.4843 23 1 -6.6779 -10.9452 0.5886 24 1 -4.4516 -11.8646 0.3050 25 6 -1.4114 -8.2258 3.2124 26 6 -0.7843 -6.8556 3.4796 27 1 -0.3633 0.0002 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 1.6584 2.1313 -0.0004 31 1 4.1197 2.1327 0.0107 32 1 5.3552 0.0039 0.0106 33 1 4.5238 -2.8172 1.0286 34 1 3.7611 -3.2610 -0.5173 35 1 5.3001 -2.3666 -0.5085 36 1 2.1104 -3.1371 1.8191 37 1 0.5677 -2.2493 1.8161 38 1 -0.4755 -4.0682 0.4918 39 1 1.0675 -4.9554 0.4952 40 1 1.0028 -5.0570 2.9722 41 1 -0.5402 -4.1697 2.9682 42 1 -2.5783 -5.3279 2.2629 43 1 -1.8022 -5.3240 0.6612 44 1 -1.9735 -7.7917 0.5648 45 1 -3.5782 -7.0576 0.8028 46 1 -3.4396 -7.4950 3.2271 47 1 -6.1404 -8.4199 0.9023 48 1 -0.7629 -8.8000 2.5507 49 1 -1.5349 -8.7595 4.1547 50 1 0.1956 -6.9879 3.9384 51 1 -1.4265 -6.2874 4.1524 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000541949764.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:55 Heat of formation + Delta-G solvation = -35.843480 kcal Electronic energy + Delta-G solvation = -26321.021818 eV Core-core repulsion = 22798.380903 eV Total energy + Delta-G solvation = -3522.640915 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.44150 -38.43302 -37.51481 -34.57367 -33.83686 -32.56858 -31.33505 -30.31380 -29.77739 -27.43333 -26.89085 -26.11993 -24.24898 -22.40897 -22.03396 -21.66961 -21.13626 -20.50712 -18.57475 -17.86044 -16.80148 -16.38036 -15.88475 -15.48760 -15.23145 -14.79127 -14.38929 -14.32947 -14.13740 -13.60822 -13.55053 -13.38026 -13.23891 -13.10014 -12.93236 -12.62294 -12.42489 -12.38547 -12.15788 -11.87744 -11.82945 -11.56993 -11.46306 -11.33460 -11.03896 -10.87482 -10.77418 -10.63910 -10.42794 -10.18226 -9.94463 -9.91739 -9.38269 -8.93489 -8.86093 -8.73502 -8.66466 -8.26300 -7.75145 -5.94359 -3.99574 0.94730 1.05337 3.14716 3.34887 3.39289 3.42203 3.67211 4.43438 4.47863 4.52722 4.55402 4.68587 4.88854 4.97781 5.10536 5.14449 5.18069 5.26782 5.31790 5.35643 5.37582 5.39309 5.45599 5.49566 5.55578 5.58659 5.72766 5.76896 5.86215 5.91090 6.01231 6.09047 6.16218 6.18425 6.18669 6.23344 6.31517 6.33533 6.33713 6.55108 6.65414 6.66741 6.88111 7.10656 7.19175 7.42155 7.47487 7.64010 7.71459 7.85895 8.08110 8.19066 8.51462 9.03836 9.64541 11.11826 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.026426 B = 0.002141 C = 0.002068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.326999 B =13075.960876 C =13537.436002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.099 4.099 3 C -0.117 4.117 4 C -0.121 4.121 5 C -0.117 4.117 6 C -0.100 4.100 7 C -0.114 4.114 8 C 0.097 3.903 9 O -0.330 6.330 10 C 0.071 3.929 11 C -0.114 4.114 12 C 0.060 3.940 13 N -0.535 5.535 14 C 0.054 3.946 15 C -0.104 4.104 16 C 0.048 3.952 17 C -0.510 4.510 18 H 0.054 0.946 19 C 0.060 3.940 20 N -0.892 5.892 21 Si 0.890 3.110 22 H -0.278 1.278 23 H -0.288 1.288 24 H -0.277 1.277 25 C -0.106 4.106 26 C 0.061 3.939 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.124 0.876 31 H 0.123 0.877 32 H 0.124 0.876 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.066 0.934 36 H 0.052 0.948 37 H 0.050 0.950 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.068 0.932 41 H 0.027 0.973 42 H 0.021 0.979 43 H 0.059 0.941 44 H 0.043 0.957 45 H 0.092 0.908 46 H 0.020 0.980 47 H 0.259 0.741 48 H 0.057 0.943 49 H 0.049 0.951 50 H 0.057 0.943 51 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.250 19.140 -0.973 25.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.100 4.100 3 C -0.135 4.135 4 C -0.139 4.139 5 C -0.135 4.135 6 C -0.100 4.100 7 C -0.171 4.171 8 C 0.053 3.947 9 O -0.247 6.247 10 C -0.004 4.004 11 C -0.152 4.152 12 C -0.069 4.069 13 N -0.260 5.260 14 C -0.073 4.073 15 C -0.143 4.143 16 C 0.029 3.971 17 C -0.549 4.549 18 H 0.072 0.928 19 C -0.141 4.141 20 N -0.532 5.532 21 Si 0.718 3.282 22 H -0.204 1.204 23 H -0.214 1.214 24 H -0.203 1.203 25 C -0.144 4.144 26 C -0.066 4.066 27 H 0.092 0.908 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.142 0.858 31 H 0.141 0.859 32 H 0.142 0.858 33 H 0.087 0.913 34 H 0.095 0.905 35 H 0.085 0.915 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.094 0.906 39 H 0.099 0.901 40 H 0.086 0.914 41 H 0.046 0.954 42 H 0.040 0.960 43 H 0.077 0.923 44 H 0.062 0.938 45 H 0.110 0.890 46 H 0.038 0.962 47 H 0.069 0.931 48 H 0.075 0.925 49 H 0.068 0.932 50 H 0.075 0.925 51 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 17.274 18.779 -1.512 25.561 hybrid contribution -0.842 -0.135 0.478 0.978 sum 16.432 18.644 -1.034 24.873 Atomic orbital electron populations 1.20729 0.90539 1.02817 1.02845 1.20277 0.96877 0.92516 1.00310 1.20934 0.94196 0.97114 1.01233 1.21126 0.94237 0.98024 1.00521 1.20931 0.99772 0.91523 1.01282 1.20264 0.93078 0.96284 1.00397 1.20728 0.99600 0.94330 1.02424 1.18375 0.89397 0.85270 1.01626 1.86010 1.74483 1.34525 1.29697 1.22721 0.98679 0.95035 0.83921 1.21522 1.01029 0.94107 0.98569 1.21894 0.98278 0.91329 0.95392 1.61963 1.20725 1.18528 1.24748 1.22342 0.87684 1.00113 0.97138 1.21663 1.00254 0.92020 1.00316 1.18682 0.90209 0.95506 0.92694 1.21175 1.02372 0.92310 1.39000 0.92818 1.24973 0.97035 0.96287 0.95759 1.69865 1.13964 1.26724 1.42607 0.86692 0.78279 0.84667 0.78545 1.20408 1.21394 1.20301 1.21680 0.99249 0.93539 0.99965 1.22110 0.98793 0.96416 0.89316 0.90769 0.91129 0.91612 0.85775 0.85899 0.85794 0.91290 0.90526 0.91497 0.93019 0.93126 0.90646 0.90084 0.91367 0.95444 0.96048 0.92298 0.93806 0.88981 0.96231 0.93065 0.92454 0.93195 0.92491 0.95863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.06 9.79 36.01 0.35 -0.71 16 2 C -0.10 -1.05 5.89 -104.47 -0.62 -1.66 16 3 C -0.12 -1.04 9.70 -39.60 -0.38 -1.42 16 4 C -0.12 -0.99 10.04 -39.56 -0.40 -1.39 16 5 C -0.12 -1.02 9.70 -39.61 -0.38 -1.41 16 6 C -0.10 -1.03 5.89 -104.47 -0.62 -1.65 16 7 C -0.11 -1.01 9.79 36.01 0.35 -0.66 16 8 C 0.10 1.13 5.67 -39.22 -0.22 0.91 16 9 O -0.33 -4.15 8.33 -19.42 -0.16 -4.31 16 10 C 0.07 0.80 5.69 37.16 0.21 1.02 16 11 C -0.11 -1.48 5.51 -26.73 -0.15 -1.62 16 12 C 0.06 0.83 4.96 -3.82 -0.02 0.81 16 13 N -0.53 -9.48 4.66 -234.67 -1.09 -10.57 16 14 C 0.05 1.07 5.29 -3.83 -0.02 1.05 16 15 C -0.10 -2.48 5.12 -26.65 -0.14 -2.62 16 16 C 0.05 1.19 2.16 -91.65 -0.20 1.00 16 17 C -0.51 -14.12 8.56 -34.44 -0.29 -14.41 16 18 H 0.05 1.47 7.74 -52.48 -0.41 1.06 16 19 C 0.06 1.68 5.31 -17.82 -0.09 1.58 16 20 N -0.89 -25.57 11.37 55.43 0.63 -24.94 16 21 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 C -0.11 -2.25 5.32 -26.65 -0.14 -2.39 16 26 C 0.06 1.10 5.46 -3.83 -0.02 1.08 16 27 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.07 0.72 6.31 -51.93 -0.33 0.39 16 29 H 0.06 0.50 8.09 -51.93 -0.42 0.08 16 30 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 31 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 32 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.08 0.76 7.53 -51.93 -0.39 0.37 16 35 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 36 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.05 0.55 7.23 -51.93 -0.38 0.17 16 38 H 0.07 1.05 6.43 -51.93 -0.33 0.72 16 39 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.07 0.86 7.99 -51.93 -0.41 0.44 16 41 H 0.03 0.38 8.12 -51.93 -0.42 -0.04 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.06 1.07 6.21 -51.93 -0.32 0.75 16 44 H 0.04 1.07 8.14 -51.93 -0.42 0.65 16 45 H 0.09 2.43 6.17 -51.93 -0.32 2.11 16 46 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 47 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 48 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 49 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 50 H 0.06 0.90 8.02 -51.93 -0.42 0.48 16 51 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 396.90 15.07 5.98 5.98 Total: -1.00 -29.37 396.90 -11.64 -41.01 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -9.20 Total: -1.12 kcal Atomic # 6 Polarization: -19.71 SS G_CDS: -2.78 Total: -22.49 kcal Atomic # 7 Polarization: -35.05 SS G_CDS: -0.46 Total: -35.51 kcal Atomic # 8 Polarization: -4.15 SS G_CDS: -0.16 Total: -4.31 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -29.37 -11.64 -41.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541949764.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.171 kcal (2) G-P(sol) polarization free energy of solvation -29.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds