Wall clock time and date at job start Tue Mar 31 2020 11:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38141 * 120.02996 * 2 1 4 4 C 1.38274 * 120.05552 * 179.70225 * 3 2 1 5 5 C 1.38261 * 120.10990 * 0.30244 * 4 3 2 6 6 C 1.38149 * 120.05703 * 359.97438 * 5 4 3 7 7 C 1.50701 * 120.02698 * 180.02562 * 6 5 4 8 8 C 1.38729 * 119.94477 * 359.97438 * 6 5 4 9 9 O 1.35898 * 120.05792 * 179.97438 * 8 6 5 10 10 C 1.42898 * 117.00366 * 90.00136 * 9 8 6 11 11 C 1.53001 * 109.47612 * 180.02562 * 10 9 8 12 12 C 1.52993 * 109.46994 * 180.02562 * 11 10 9 13 13 N 1.46909 * 109.46758 * 180.02562 * 12 11 10 14 14 C 1.46851 * 110.99565 * 294.20800 * 13 12 11 15 15 C 1.53039 * 109.52118 * 174.16035 * 14 13 12 16 16 C 1.53121 * 109.27636 * 59.17770 * 15 14 13 17 17 C 1.50699 * 109.57340 * 182.40784 * 16 15 14 18 18 H 1.08005 * 119.99913 * 119.71688 * 17 16 15 19 19 C 1.37884 * 120.00215 * 299.71671 * 17 16 15 20 20 N 1.31508 * 119.99650 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99879 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.46823 * 60.00232 * 21 19 17 23 23 H 1.48502 * 109.46874 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.47148 * 300.00054 * 21 19 17 25 25 C 1.53115 * 109.16412 * 302.34451 * 16 15 14 26 26 C 1.46844 * 111.00059 * 170.00207 * 13 12 11 27 27 H 1.09000 * 109.47072 * 89.98949 * 1 2 3 28 28 H 1.08998 * 109.47473 * 209.99832 * 1 2 3 29 29 H 1.09000 * 109.46857 * 329.99816 * 1 2 3 30 30 H 1.08002 * 119.97550 * 359.97438 * 3 2 1 31 31 H 1.07998 * 119.94363 * 180.27764 * 4 3 2 32 32 H 1.07996 * 119.97484 * 179.97438 * 5 4 3 33 33 H 1.08998 * 109.47189 * 89.99754 * 7 6 5 34 34 H 1.09006 * 109.46628 * 209.99786 * 7 6 5 35 35 H 1.09001 * 109.47332 * 329.99143 * 7 6 5 36 36 H 1.09004 * 109.47027 * 300.00302 * 10 9 8 37 37 H 1.09002 * 109.46890 * 59.99711 * 10 9 8 38 38 H 1.08998 * 109.46611 * 300.00290 * 11 10 9 39 39 H 1.08995 * 109.46797 * 59.99598 * 11 10 9 40 40 H 1.08992 * 109.47270 * 299.99406 * 12 11 10 41 41 H 1.08995 * 109.47685 * 60.00131 * 12 11 10 42 42 H 1.08996 * 109.46433 * 294.17494 * 14 13 12 43 43 H 1.08998 * 109.46374 * 54.15045 * 14 13 12 44 44 H 1.09006 * 109.50268 * 299.24263 * 15 14 13 45 45 H 1.08995 * 109.50532 * 179.12154 * 15 14 13 46 46 H 1.09005 * 109.52220 * 62.25283 * 16 15 14 47 47 H 0.97003 * 120.00029 * 180.02562 * 20 19 17 48 48 H 1.08996 * 109.50812 * 297.71726 * 25 16 15 49 49 H 1.08997 * 109.50773 * 177.59510 * 25 16 15 50 50 H 1.09004 * 109.45788 * 305.85318 * 26 13 12 51 51 H 1.08995 * 109.46623 * 65.82709 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1960 0.0000 4 6 3.5811 1.1966 0.0062 5 6 4.2752 0.0009 0.0061 6 6 3.5885 -1.1979 0.0004 7 6 4.3458 -2.5008 0.0009 8 6 2.2012 -1.2012 -0.0048 9 8 1.5234 -2.3790 -0.0110 10 6 1.1950 -2.9453 1.2592 11 6 0.4398 -4.2597 1.0519 12 6 0.0877 -4.8656 2.4119 13 7 -0.6369 -6.1279 2.2127 14 6 -1.9415 -5.8917 1.5812 15 6 -2.6032 -7.2331 1.2573 16 6 -2.7785 -8.0354 2.5496 17 6 -3.3755 -9.3819 2.2309 18 1 -2.8348 -10.2841 2.4761 19 6 -4.6121 -9.4621 1.6263 20 7 -5.2703 -8.3635 1.3273 21 14 -5.3518 -11.1312 1.2306 22 1 -5.5142 -11.9103 2.4843 23 1 -6.6779 -10.9452 0.5886 24 1 -4.4516 -11.8646 0.3050 25 6 -1.4114 -8.2258 3.2124 26 6 -0.7843 -6.8556 3.4796 27 1 -0.3633 0.0002 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 1.6584 2.1313 -0.0004 31 1 4.1197 2.1327 0.0107 32 1 5.3552 0.0039 0.0106 33 1 4.5238 -2.8172 1.0286 34 1 3.7611 -3.2610 -0.5173 35 1 5.3001 -2.3666 -0.5085 36 1 2.1104 -3.1371 1.8191 37 1 0.5677 -2.2493 1.8161 38 1 -0.4755 -4.0682 0.4918 39 1 1.0675 -4.9554 0.4952 40 1 1.0028 -5.0570 2.9722 41 1 -0.5402 -4.1697 2.9682 42 1 -2.5783 -5.3279 2.2629 43 1 -1.8022 -5.3240 0.6612 44 1 -1.9735 -7.7917 0.5648 45 1 -3.5782 -7.0576 0.8028 46 1 -3.4396 -7.4950 3.2271 47 1 -6.1404 -8.4199 0.9023 48 1 -0.7629 -8.8000 2.5507 49 1 -1.5349 -8.7595 4.1547 50 1 0.1956 -6.9879 3.9384 51 1 -1.4265 -6.2874 4.1524 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000541949764.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:54 Heat of formation + Delta-G solvation = -49.959221 kcal Electronic energy + Delta-G solvation = -26321.633923 eV Core-core repulsion = 22798.380903 eV Total energy + Delta-G solvation = -3523.253020 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.19088 -39.92217 -38.37687 -36.18807 -34.52045 -34.19018 -32.40648 -31.58894 -31.45089 -28.42131 -27.60393 -27.54585 -25.66818 -23.99257 -23.37631 -22.65096 -21.82716 -21.79347 -20.35790 -18.66945 -18.42217 -17.60575 -17.07828 -16.51528 -16.26761 -16.20872 -15.76837 -15.52445 -15.08058 -14.87674 -14.78738 -14.45465 -14.32212 -14.09137 -14.03157 -13.87671 -13.79922 -13.59370 -13.17803 -12.94252 -12.84172 -12.83210 -12.61396 -12.55629 -12.40791 -12.33190 -12.20050 -11.98367 -11.87533 -11.84020 -11.77014 -11.28906 -10.79897 -10.76759 -10.61844 -10.36618 -9.53816 -9.45095 -9.19062 -8.07397 -6.20756 0.23726 0.37158 1.41381 1.42940 1.50392 2.37521 2.44138 2.84963 3.17375 3.20225 3.81744 3.87279 3.92868 4.09636 4.11463 4.14230 4.28184 4.33379 4.34986 4.38157 4.40453 4.48577 4.52194 4.55602 4.64078 4.66734 4.70114 4.72956 4.77202 4.77971 4.86653 4.89990 4.92126 4.97003 5.05227 5.15463 5.17567 5.23487 5.30117 5.32934 5.36068 5.52349 5.52738 5.57255 5.62893 5.63318 5.88912 6.00853 6.03163 6.29128 6.34530 6.41420 6.62825 6.90813 7.46779 8.97001 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.026426 B = 0.002141 C = 0.002068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.326999 B =13075.960876 C =13537.436002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.117 4.117 3 C -0.122 4.122 4 C -0.119 4.119 5 C -0.120 4.120 6 C -0.115 4.115 7 C -0.111 4.111 8 C 0.069 3.931 9 O -0.346 6.346 10 C 0.078 3.922 11 C -0.106 4.106 12 C 0.063 3.937 13 N -0.543 5.543 14 C 0.068 3.932 15 C -0.096 4.096 16 C 0.043 3.957 17 C -0.533 4.533 18 H 0.051 0.949 19 C 0.010 3.990 20 N -0.918 5.918 21 Si 0.953 3.047 22 H -0.271 1.271 23 H -0.284 1.284 24 H -0.272 1.272 25 C -0.100 4.100 26 C 0.066 3.934 27 H 0.071 0.929 28 H 0.057 0.943 29 H 0.082 0.918 30 H 0.145 0.855 31 H 0.151 0.849 32 H 0.147 0.853 33 H 0.075 0.925 34 H 0.059 0.941 35 H 0.082 0.918 36 H 0.063 0.937 37 H 0.054 0.946 38 H 0.060 0.940 39 H 0.073 0.927 40 H 0.092 0.908 41 H 0.034 0.966 42 H 0.013 0.987 43 H 0.072 0.928 44 H 0.029 0.971 45 H 0.060 0.940 46 H -0.013 1.013 47 H 0.260 0.740 48 H 0.051 0.949 49 H 0.054 0.946 50 H 0.091 0.909 51 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.373 20.362 -0.482 28.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.117 4.117 3 C -0.140 4.140 4 C -0.137 4.137 5 C -0.138 4.138 6 C -0.115 4.115 7 C -0.168 4.168 8 C 0.026 3.974 9 O -0.264 6.264 10 C 0.003 3.997 11 C -0.143 4.143 12 C -0.065 4.065 13 N -0.268 5.268 14 C -0.060 4.060 15 C -0.134 4.134 16 C 0.025 3.975 17 C -0.572 4.572 18 H 0.069 0.931 19 C -0.188 4.188 20 N -0.558 5.558 21 Si 0.779 3.221 22 H -0.196 1.196 23 H -0.210 1.210 24 H -0.197 1.197 25 C -0.138 4.138 26 C -0.061 4.061 27 H 0.090 0.910 28 H 0.076 0.924 29 H 0.101 0.899 30 H 0.162 0.838 31 H 0.169 0.831 32 H 0.165 0.835 33 H 0.094 0.906 34 H 0.078 0.922 35 H 0.101 0.899 36 H 0.082 0.918 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.091 0.909 40 H 0.110 0.890 41 H 0.052 0.948 42 H 0.032 0.968 43 H 0.090 0.910 44 H 0.048 0.952 45 H 0.078 0.922 46 H 0.005 0.995 47 H 0.069 0.931 48 H 0.070 0.930 49 H 0.073 0.927 50 H 0.109 0.891 51 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 19.413 20.005 -1.014 27.895 hybrid contribution -1.469 -0.459 0.315 1.571 sum 17.944 19.547 -0.699 26.544 Atomic orbital electron populations 1.20720 0.90343 1.02983 1.02727 1.20493 0.97345 0.92956 1.00952 1.21239 0.94849 0.97291 1.00574 1.21510 0.94137 0.99072 0.98982 1.21259 1.01022 0.91115 1.00434 1.20508 0.92821 0.97489 1.00700 1.20720 0.99881 0.93381 1.02818 1.18658 0.90160 0.85147 1.03483 1.85974 1.74906 1.35318 1.30186 1.22606 0.98987 0.94130 0.83941 1.21385 1.00371 0.94854 0.97740 1.21955 0.98681 0.89606 0.96237 1.61901 1.19318 1.20770 1.24780 1.22067 0.88579 0.97427 0.97919 1.21423 0.98739 0.94053 0.99185 1.18668 0.91797 0.94238 0.92842 1.21569 1.02966 0.93390 1.39231 0.93053 1.25765 0.97546 0.99836 0.95653 1.70011 1.14133 1.28619 1.43012 0.85684 0.77474 0.80414 0.78519 1.19647 1.20987 1.19726 1.21550 0.96906 0.95826 0.99541 1.22056 1.00226 0.94359 0.89465 0.91039 0.92449 0.89920 0.83758 0.83110 0.83524 0.90619 0.92204 0.89885 0.91845 0.92746 0.92169 0.90870 0.88984 0.94804 0.96832 0.90958 0.95203 0.92184 0.99464 0.93113 0.93025 0.92705 0.89078 0.95995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.05 9.79 71.24 0.70 -1.35 16 2 C -0.12 -2.37 5.89 -19.77 -0.12 -2.48 16 3 C -0.12 -1.91 9.70 22.26 0.22 -1.70 16 4 C -0.12 -1.62 10.04 22.28 0.22 -1.40 16 5 C -0.12 -1.82 9.70 22.25 0.22 -1.60 16 6 C -0.11 -2.22 5.89 -19.77 -0.12 -2.34 16 7 C -0.11 -1.84 9.79 71.24 0.70 -1.14 16 8 C 0.07 1.56 5.67 22.51 0.13 1.69 16 9 O -0.35 -8.69 8.33 -92.40 -0.77 -9.46 16 10 C 0.08 1.70 5.69 71.98 0.41 2.11 16 11 C -0.11 -2.64 5.51 30.59 0.17 -2.47 16 12 C 0.06 1.63 4.96 86.30 0.43 2.06 16 13 N -0.54 -18.62 4.66 -896.37 -4.17 -22.79 16 14 C 0.07 2.69 5.29 86.33 0.46 3.15 16 15 C -0.10 -4.71 5.12 30.65 0.16 -4.55 16 16 C 0.04 2.22 2.16 -11.46 -0.02 2.20 16 17 C -0.53 -30.22 8.56 25.60 0.22 -30.00 16 18 H 0.05 2.85 7.74 -2.91 -0.02 2.83 16 19 C 0.01 0.58 5.31 84.66 0.45 1.03 16 20 N -0.92 -54.17 11.37 21.45 0.24 -53.93 16 21 Si 0.95 44.54 29.54 68.60 2.03 46.57 16 22 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 23 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 24 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 25 C -0.10 -4.23 5.32 30.65 0.16 -4.06 16 26 C 0.07 2.29 5.46 86.33 0.47 2.76 16 27 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.06 1.18 6.31 -2.39 -0.02 1.17 16 29 H 0.08 1.17 8.09 -2.39 -0.02 1.15 16 30 H 0.14 1.58 8.06 -2.91 -0.02 1.56 16 31 H 0.15 1.15 8.06 -2.91 -0.02 1.13 16 32 H 0.15 1.45 8.06 -2.91 -0.02 1.43 16 33 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.06 1.17 7.53 -2.38 -0.02 1.16 16 35 H 0.08 1.05 8.09 -2.39 -0.02 1.03 16 36 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.05 1.13 7.23 -2.39 -0.02 1.11 16 38 H 0.06 1.68 6.43 -2.39 -0.02 1.66 16 39 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.09 2.01 7.99 -2.39 -0.02 1.99 16 41 H 0.03 0.86 8.12 -2.39 -0.02 0.84 16 42 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 43 H 0.07 2.66 6.21 -2.39 -0.01 2.65 16 44 H 0.03 1.50 8.14 -2.38 -0.02 1.48 16 45 H 0.06 3.33 6.17 -2.39 -0.01 3.31 16 46 H -0.01 -0.73 8.14 -2.38 -0.02 -0.75 16 47 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 48 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 49 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 50 H 0.09 2.56 8.02 -2.38 -0.02 2.54 16 51 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -65.03 396.90 3.04 -61.98 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: 0.87 Total: 15.72 kcal Atomic # 6 Polarization: -42.94 SS G_CDS: 4.84 Total: -38.10 kcal Atomic # 7 Polarization: -72.79 SS G_CDS: -3.93 Total: -76.72 kcal Atomic # 8 Polarization: -8.69 SS G_CDS: -0.77 Total: -9.46 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -65.03 3.04 -61.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541949764.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.025 kcal (2) G-P(sol) polarization free energy of solvation -65.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds