Wall clock time and date at job start Tue Mar 31 2020 12:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47035 * 2 1 4 4 C 1.53005 * 109.46784 * 240.00686 * 2 1 3 5 5 C 1.50701 * 109.47435 * 120.00479 * 2 1 3 6 6 C 1.38231 * 120.00181 * 59.99978 * 5 2 1 7 7 C 1.38233 * 119.99917 * 180.02562 * 6 5 2 8 8 C 1.38234 * 120.00115 * 0.02562 * 7 6 5 9 9 C 1.50695 * 120.00022 * 179.97438 * 8 7 6 10 10 C 1.52999 * 109.47546 * 305.94244 * 9 8 7 11 11 C 1.52998 * 109.47315 * 185.93830 * 9 8 7 12 12 C 1.50705 * 109.47190 * 65.93920 * 9 8 7 13 13 O 1.21279 * 119.99879 * 355.58398 * 12 9 8 14 14 N 1.34777 * 120.00241 * 175.30019 * 12 9 8 15 15 C 1.46494 * 119.99993 * 180.02562 * 14 12 9 16 16 C 1.53005 * 109.46873 * 180.02562 * 15 14 12 17 17 C 1.50705 * 109.46733 * 180.02562 * 16 15 14 18 18 H 1.07998 * 120.00626 * 359.97438 * 17 16 15 19 19 C 1.37879 * 119.99796 * 180.02562 * 17 16 15 20 20 N 1.31522 * 119.99821 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99988 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47307 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47308 * 119.99834 * 21 19 17 24 24 H 1.48503 * 109.46935 * 239.99784 * 21 19 17 25 25 C 1.38234 * 119.99991 * 0.24974 * 8 7 6 26 26 C 1.38235 * 119.99988 * 359.49838 * 25 8 7 27 27 H 1.09009 * 109.46831 * 299.99517 * 1 2 3 28 28 H 1.08999 * 109.47767 * 59.99702 * 1 2 3 29 29 H 1.09003 * 109.47408 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47039 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47555 * 300.00467 * 3 2 1 32 32 H 1.08995 * 109.46969 * 60.00462 * 3 2 1 33 33 H 1.09008 * 109.46797 * 299.99409 * 4 2 1 34 34 H 1.08996 * 109.47781 * 59.99365 * 4 2 1 35 35 H 1.09006 * 109.46869 * 180.02562 * 4 2 1 36 36 H 1.08002 * 119.99706 * 359.97438 * 6 5 2 37 37 H 1.07996 * 119.99732 * 179.97438 * 7 6 5 38 38 H 1.08990 * 109.47815 * 180.02562 * 10 9 8 39 39 H 1.09008 * 109.46701 * 300.00124 * 10 9 8 40 40 H 1.09003 * 109.47221 * 59.99597 * 10 9 8 41 41 H 1.08996 * 109.47340 * 300.00242 * 11 9 8 42 42 H 1.09008 * 109.47104 * 60.00411 * 11 9 8 43 43 H 1.09000 * 109.47314 * 179.97438 * 11 9 8 44 44 H 0.96999 * 119.99430 * 0.02562 * 14 12 9 45 45 H 1.09000 * 109.47675 * 300.00599 * 15 14 12 46 46 H 1.09005 * 109.47337 * 60.00431 * 15 14 12 47 47 H 1.09000 * 109.46726 * 299.99610 * 16 15 14 48 48 H 1.08989 * 109.47107 * 60.00211 * 16 15 14 49 49 H 0.97004 * 119.99347 * 180.02562 * 20 19 17 50 50 H 1.07994 * 120.00155 * 179.72429 * 25 8 7 51 51 H 1.07996 * 120.00535 * 180.22709 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 2.0324 -0.7105 1.2304 6 6 1.6985 -2.0339 1.4491 7 6 2.1589 -2.6854 2.5780 8 6 2.9528 -2.0134 3.4884 9 6 3.4543 -2.7235 4.7193 10 6 2.2712 -3.3325 5.4745 11 6 4.1779 -1.7249 5.6250 12 6 4.4085 -3.8174 4.3145 13 8 4.5955 -4.0550 3.1400 14 7 5.0583 -4.5280 5.2576 15 6 5.9863 -5.5910 4.8640 16 6 6.5844 -6.2352 6.1163 17 6 7.5396 -7.3284 5.7113 18 1 7.7033 -7.5425 4.6655 19 6 8.2037 -8.0559 6.6761 20 7 8.0039 -7.7955 7.9497 21 14 9.3881 -9.4104 6.1742 22 1 9.4354 -9.5029 4.6929 23 1 10.7439 -9.1005 6.6948 24 1 8.9262 -10.7051 6.7361 25 6 3.2820 -0.6882 3.2726 26 6 2.8259 -0.0382 2.1411 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6765 -1.7489 -1.2494 34 1 1.6765 -0.2074 -2.1393 35 1 3.1299 -0.7215 -1.2492 36 1 1.0772 -2.5586 0.7383 37 1 1.8977 -3.7193 2.7490 38 1 2.6337 -3.8457 6.3650 39 1 1.5809 -2.5412 5.7673 40 1 1.7556 -4.0439 4.8293 41 1 5.0207 -1.2911 5.0871 42 1 3.4877 -0.9337 5.9179 43 1 4.5402 -2.2385 6.5156 44 1 4.9115 -4.3354 6.1968 45 1 5.4511 -6.3457 4.2878 46 1 6.7857 -5.1685 4.2552 47 1 7.1197 -5.4807 6.6926 48 1 5.7849 -6.6578 6.7246 49 1 8.4715 -8.3071 8.6284 50 1 3.8985 -0.1619 3.9861 51 1 3.0860 0.9960 1.9706 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000542382285.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:14 Heat of formation + Delta-G solvation = -47.834224 kcal Electronic energy + Delta-G solvation = -26595.273225 eV Core-core repulsion = 23072.112352 eV Total energy + Delta-G solvation = -3523.160873 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.59215 -39.23140 -36.90304 -34.83390 -34.51405 -32.76024 -31.22581 -29.75972 -28.78561 -27.92954 -27.46578 -27.14170 -25.04226 -23.88824 -22.29785 -21.87085 -20.88897 -19.60690 -18.96642 -17.09199 -16.54269 -16.21704 -15.39711 -15.34440 -14.91010 -14.60523 -14.50122 -14.46995 -14.33450 -13.81377 -13.58782 -13.54433 -13.23922 -12.88514 -12.74415 -12.46357 -12.31273 -12.26375 -12.22049 -12.01164 -11.99314 -11.90006 -11.71134 -11.28222 -11.18226 -11.13405 -11.09693 -11.03032 -10.65843 -10.59534 -10.48277 -10.32278 -9.73746 -9.40665 -9.12381 -8.79744 -8.52976 -8.45848 -8.33633 -6.10112 -4.12652 1.37671 1.51007 3.04762 3.27779 3.35315 3.40325 3.58922 3.96604 4.38103 4.41668 4.53748 4.55767 4.77463 4.78241 4.91602 5.05060 5.09229 5.14968 5.18418 5.27038 5.32494 5.38576 5.43825 5.48699 5.52009 5.59839 5.63878 5.64514 5.66243 5.70639 5.74464 5.81465 5.84446 5.98753 6.01764 6.08353 6.09413 6.10422 6.14264 6.35648 6.36589 6.52915 6.65119 6.70866 6.74594 6.95135 7.06518 7.51788 7.61453 7.88511 8.04727 8.27903 8.69485 8.93642 9.52200 11.01485 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.024516 B = 0.002336 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.816783 B =11983.365341 C =12503.561082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.029 4.029 3 C -0.143 4.143 4 C -0.139 4.139 5 C -0.075 4.075 6 C -0.117 4.117 7 C -0.084 4.084 8 C -0.058 4.058 9 C -0.045 4.045 10 C -0.137 4.137 11 C -0.144 4.144 12 C 0.515 3.485 13 O -0.541 6.541 14 N -0.720 5.720 15 C 0.122 3.878 16 C 0.013 3.987 17 C -0.520 4.520 18 H 0.059 0.941 19 C 0.058 3.942 20 N -0.894 5.894 21 Si 0.896 3.104 22 H -0.271 1.271 23 H -0.283 1.283 24 H -0.283 1.283 25 C -0.114 4.114 26 C -0.125 4.125 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.117 0.883 37 H 0.118 0.882 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.062 0.938 41 H 0.064 0.936 42 H 0.069 0.931 43 H 0.066 0.934 44 H 0.396 0.604 45 H 0.055 0.945 46 H 0.055 0.945 47 H 0.022 0.978 48 H 0.022 0.978 49 H 0.261 0.739 50 H 0.124 0.876 51 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.170 18.841 -10.073 26.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.029 4.029 3 C -0.200 4.200 4 C -0.196 4.196 5 C -0.075 4.075 6 C -0.135 4.135 7 C -0.102 4.102 8 C -0.058 4.058 9 C -0.048 4.048 10 C -0.195 4.195 11 C -0.201 4.201 12 C 0.300 3.700 13 O -0.418 6.418 14 N -0.370 5.370 15 C 0.000 4.000 16 C -0.025 4.025 17 C -0.559 4.559 18 H 0.078 0.922 19 C -0.144 4.144 20 N -0.533 5.533 21 Si 0.724 3.276 22 H -0.196 1.196 23 H -0.209 1.209 24 H -0.209 1.209 25 C -0.132 4.132 26 C -0.143 4.143 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.135 0.865 37 H 0.136 0.864 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.088 0.912 43 H 0.085 0.915 44 H 0.230 0.770 45 H 0.073 0.927 46 H 0.073 0.927 47 H 0.040 0.960 48 H 0.040 0.960 49 H 0.071 0.929 50 H 0.142 0.858 51 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -15.958 18.584 -10.751 26.750 hybrid contribution 0.729 -0.815 0.355 1.150 sum -15.228 17.769 -10.395 25.607 Atomic orbital electron populations 1.21879 0.93867 1.02034 1.01647 1.19483 0.95540 0.94953 0.92948 1.21953 1.01283 0.95056 1.01714 1.21893 1.01449 1.00245 0.96012 1.19733 0.97998 0.94103 0.95660 1.20864 1.00888 0.94233 0.97508 1.20876 0.96444 0.99189 0.93653 1.19294 0.97571 0.93681 0.95258 1.19742 0.95746 0.94718 0.94631 1.21869 0.96474 1.01071 1.00041 1.21957 1.00505 0.98684 0.98951 1.20275 0.81170 0.82411 0.86176 1.90685 1.64734 1.68488 1.17890 1.46310 1.44783 1.36645 1.09285 1.21707 0.90650 0.87519 1.00119 1.19324 0.95994 0.95705 0.91457 1.21092 1.24579 1.17018 0.93187 0.92236 1.25004 0.96959 0.97489 0.94901 1.69969 1.42782 1.40947 0.99601 0.86462 0.80681 0.81614 0.78851 1.19596 1.20927 1.20933 1.21108 1.00007 0.94317 0.97800 1.21057 0.98846 0.99982 0.94393 0.92567 0.92538 0.92433 0.92238 0.92564 0.92320 0.92384 0.92548 0.92396 0.86514 0.86442 0.91438 0.91416 0.91892 0.91678 0.91248 0.91454 0.76999 0.92675 0.92669 0.95969 0.95962 0.92916 0.85819 0.85957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 8.29 37.15 0.31 -0.72 16 2 C -0.03 -0.25 0.85 -155.66 -0.13 -0.39 16 3 C -0.14 -1.06 7.13 37.16 0.26 -0.79 16 4 C -0.14 -1.19 8.29 37.16 0.31 -0.88 16 5 C -0.07 -0.82 4.76 -104.62 -0.50 -1.32 16 6 C -0.12 -1.40 8.71 -39.59 -0.34 -1.75 16 7 C -0.08 -1.13 8.15 -39.58 -0.32 -1.45 16 8 C -0.06 -0.77 4.33 -104.63 -0.45 -1.22 16 9 C -0.05 -0.58 0.72 -156.81 -0.11 -0.69 16 10 C -0.14 -1.49 8.17 37.16 0.30 -1.19 16 11 C -0.14 -1.53 7.00 37.16 0.26 -1.27 16 12 C 0.52 8.87 6.40 -10.98 -0.07 8.80 16 13 O -0.54 -11.39 15.33 5.56 0.09 -11.31 16 14 N -0.72 -12.65 5.38 -60.29 -0.32 -12.97 16 15 C 0.12 2.63 5.61 -4.04 -0.02 2.61 16 16 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 17 C -0.52 -14.48 9.11 -34.44 -0.31 -14.79 16 18 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 20 N -0.89 -26.10 13.29 55.43 0.74 -25.36 16 21 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 22 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 C -0.11 -1.37 8.99 -39.58 -0.36 -1.73 16 26 C -0.12 -1.38 8.98 -39.58 -0.36 -1.74 16 27 H 0.06 0.43 8.14 -51.92 -0.42 0.00 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.44 7.39 -51.93 -0.38 0.05 16 30 H 0.06 0.46 7.52 -51.93 -0.39 0.07 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.41 7.51 -51.93 -0.39 0.02 16 33 H 0.06 0.51 7.39 -51.92 -0.38 0.12 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.12 1.22 7.10 -52.49 -0.37 0.84 16 37 H 0.12 1.61 7.23 -52.49 -0.38 1.23 16 38 H 0.07 0.69 7.90 -51.93 -0.41 0.28 16 39 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16 40 H 0.06 0.71 7.08 -51.93 -0.37 0.34 16 41 H 0.06 0.73 7.25 -51.93 -0.38 0.35 16 42 H 0.07 0.60 7.78 -51.92 -0.40 0.19 16 43 H 0.07 0.68 7.31 -51.93 -0.38 0.30 16 44 H 0.40 6.05 7.37 -40.82 -0.30 5.75 16 45 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 46 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 47 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 49 H 0.26 7.18 8.31 -40.82 -0.34 6.85 16 50 H 0.12 1.27 5.91 -52.49 -0.31 0.96 16 51 H 0.12 1.11 5.90 -52.49 -0.31 0.80 16 LS Contribution 398.99 15.07 6.01 6.01 Total: -1.00 -31.92 398.99 -9.21 -41.14 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -8.93 Total: 2.88 kcal Atomic # 6 Polarization: -15.05 SS G_CDS: -1.78 Total: -16.82 kcal Atomic # 7 Polarization: -38.75 SS G_CDS: 0.41 Total: -38.33 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.09 Total: -11.31 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -31.92 -9.21 -41.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542382285.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.697 kcal (2) G-P(sol) polarization free energy of solvation -31.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds