Wall clock time and date at job start Tue Mar 31 2020 11:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 112.84782 * 2 1 4 4 C 1.53777 * 113.61502 * 131.19884 * 2 1 3 5 5 C 1.53780 * 87.08124 * 89.11430 * 4 2 1 6 6 C 1.53006 * 113.61097 * 139.98215 * 5 4 2 7 7 N 1.46900 * 109.47078 * 176.52997 * 6 5 4 8 8 C 1.46896 * 111.00195 * 179.97438 * 7 6 5 9 9 C 1.50697 * 109.47382 * 179.97438 * 8 7 6 10 10 C 1.38284 * 119.97210 * 269.97968 * 9 8 7 11 11 C 1.38250 * 120.10839 * 180.02562 * 10 9 8 12 12 C 1.38161 * 120.05581 * 359.68103 * 11 10 9 13 13 C 1.38710 * 119.94432 * 0.61525 * 12 11 10 14 14 O 1.35900 * 120.05544 * 179.67631 * 13 12 11 15 15 C 1.42898 * 117.00172 * 359.72769 * 14 13 12 16 16 C 1.52997 * 109.47319 * 179.97438 * 15 14 13 17 17 C 1.50697 * 109.47466 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99890 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00428 * 179.97438 * 17 16 15 20 20 N 1.31519 * 119.99563 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00432 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46838 * 89.99826 * 21 19 17 23 23 H 1.48497 * 109.47419 * 209.99978 * 21 19 17 24 24 H 1.48499 * 109.47011 * 330.00539 * 21 19 17 25 25 C 1.38129 * 119.97079 * 90.00085 * 9 8 7 26 26 C 1.53783 * 87.17295 * 25.39363 * 5 4 2 27 27 H 1.09001 * 109.47688 * 288.79988 * 1 2 3 28 28 H 1.09007 * 109.47410 * 48.80488 * 1 2 3 29 29 H 1.09003 * 109.47003 * 168.80009 * 1 2 3 30 30 H 1.08996 * 109.47216 * 191.19524 * 3 2 1 31 31 H 1.09000 * 109.47556 * 311.19941 * 3 2 1 32 32 H 1.09005 * 109.47339 * 71.19682 * 3 2 1 33 33 H 1.09008 * 113.61177 * 334.56684 * 4 2 1 34 34 H 1.08997 * 113.61500 * 203.67112 * 4 2 1 35 35 H 1.09000 * 113.61795 * 270.80117 * 5 4 2 36 36 H 1.08996 * 109.47046 * 56.52666 * 6 5 4 37 37 H 1.09006 * 109.46798 * 296.52934 * 6 5 4 38 38 H 1.00901 * 111.00271 * 303.95429 * 7 6 5 39 39 H 1.09005 * 109.46944 * 59.99947 * 8 7 6 40 40 H 1.09002 * 109.47398 * 300.00389 * 8 7 6 41 41 H 1.07994 * 119.94418 * 0.02562 * 10 9 8 42 42 H 1.08002 * 119.97138 * 179.97438 * 11 10 9 43 43 H 1.08006 * 120.02996 * 180.29325 * 12 11 10 44 44 H 1.09002 * 109.47259 * 300.00149 * 15 14 13 45 45 H 1.09001 * 109.47074 * 60.00171 * 15 14 13 46 46 H 1.09002 * 109.47153 * 300.00307 * 16 15 14 47 47 H 1.08998 * 109.47533 * 59.99936 * 16 15 14 48 48 H 0.97002 * 119.99731 * 180.02562 * 20 19 17 49 49 H 1.07998 * 120.02418 * 0.02613 * 25 9 8 50 50 H 1.08995 * 113.61261 * 89.15352 * 26 5 4 51 51 H 1.09003 * 113.61050 * 220.06122 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1240 1.4099 0.0000 4 6 2.1460 -0.9281 1.0602 5 6 2.0929 -2.0425 0.0019 6 6 3.3264 -2.9478 0.0028 7 7 3.1446 -4.0241 -0.9803 8 6 4.3123 -4.9149 -1.0077 9 6 4.0895 -6.0042 -2.0249 10 6 3.4848 -7.1890 -1.6471 11 6 3.2794 -8.1905 -2.5778 12 6 3.6722 -8.0070 -3.8897 13 6 4.2845 -6.8219 -4.2698 14 8 4.6776 -6.6417 -5.5582 15 6 4.4345 -7.7171 -6.4672 16 6 4.9405 -7.3329 -7.8590 17 6 4.6835 -8.4667 -8.8177 18 1 4.2066 -9.3709 -8.4693 19 6 5.0564 -8.3496 -10.1400 20 7 5.6368 -7.2483 -10.5643 21 14 4.7385 -9.7554 -11.3283 22 1 3.3999 -9.5859 -11.9487 23 1 5.7791 -9.7530 -12.3877 24 1 4.7835 -11.0448 -10.5930 25 6 4.4898 -5.8185 -3.3338 26 6 2.1448 -0.9317 -1.0603 27 1 -0.3634 0.3312 0.9728 28 1 -0.3634 0.6769 -0.7733 29 1 -0.3633 -1.0081 -0.1996 30 1 3.1941 1.3533 -0.1995 31 1 1.6414 2.0076 -0.7732 32 1 1.9599 1.8734 0.9728 33 1 1.4944 -1.1068 1.9156 34 1 3.1590 -0.6485 1.3496 35 1 1.1574 -2.6019 0.0033 36 1 3.4591 -3.3801 0.9945 37 1 4.2074 -2.3616 -0.2590 38 1 2.2984 -4.5423 -0.7969 39 1 4.4523 -5.3609 -0.0230 40 1 5.2000 -4.3422 -1.2766 41 1 3.1725 -7.3323 -0.6232 42 1 2.8073 -9.1151 -2.2802 43 1 3.5072 -8.7878 -4.6175 44 1 4.9582 -8.6091 -6.1232 45 1 3.3643 -7.9191 -6.5131 46 1 4.4164 -6.4410 -8.2027 47 1 6.0106 -7.1305 -7.8135 48 1 5.8987 -7.1657 -11.4946 49 1 4.9627 -4.8932 -3.6282 50 1 3.1575 -0.6532 -1.3517 51 1 1.4923 -1.1134 -1.9143 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000548045375.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:30 Heat of formation + Delta-G solvation = -21.597226 kcal Electronic energy + Delta-G solvation = -25149.250812 eV Core-core repulsion = 21627.227660 eV Total energy + Delta-G solvation = -3522.023152 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.14419 -39.75272 -37.59305 -35.76820 -33.36781 -32.15392 -30.86658 -30.30795 -29.11568 -27.76384 -26.67101 -25.97438 -25.03806 -23.89827 -22.33759 -21.60847 -20.99977 -20.07964 -18.52984 -17.59045 -16.31918 -16.05045 -15.79712 -15.59695 -15.41733 -15.30634 -15.04371 -14.64556 -14.47591 -14.33113 -13.85854 -13.53803 -13.43112 -13.04583 -12.94034 -12.60323 -12.50827 -12.29994 -12.17274 -12.12927 -12.05372 -11.65004 -11.42388 -11.39567 -11.23636 -11.02555 -10.87350 -10.80852 -10.69403 -10.43166 -10.30947 -10.19221 -9.84323 -9.64621 -9.28869 -8.76459 -8.53716 -8.43799 -7.82048 -6.09364 -4.13979 1.46744 1.69705 3.27987 3.33841 3.36703 3.74814 3.86646 4.11850 4.22432 4.36216 4.37357 4.41688 4.64436 4.82647 4.87327 4.96783 5.05451 5.14003 5.19856 5.26911 5.26952 5.29387 5.30634 5.40996 5.42433 5.46580 5.48784 5.51313 5.55971 5.63404 5.64754 5.72605 5.73727 5.87658 5.89085 5.92075 6.05280 6.08325 6.17055 6.21311 6.27640 6.56529 6.59222 6.69575 6.74758 6.77961 7.01720 7.18078 7.52383 7.65677 7.82834 8.08796 8.25099 8.91593 9.50194 11.02190 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.016271 B = 0.001907 C = 0.001768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.412766 B =14680.523297 C =15834.685234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.094 4.094 3 C -0.135 4.135 4 C -0.127 4.127 5 C -0.106 4.106 6 C 0.069 3.931 7 N -0.681 5.681 8 C 0.103 3.897 9 C -0.051 4.051 10 C -0.167 4.167 11 C -0.081 4.081 12 C -0.211 4.211 13 C 0.145 3.855 14 O -0.315 6.315 15 C 0.065 3.935 16 C 0.025 3.975 17 C -0.526 4.526 18 H 0.058 0.942 19 C 0.060 3.940 20 N -0.889 5.889 21 Si 0.899 3.101 22 H -0.279 1.279 23 H -0.285 1.285 24 H -0.273 1.273 25 C -0.138 4.138 26 C -0.116 4.116 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.064 0.936 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.027 0.973 37 H 0.073 0.927 38 H 0.342 0.658 39 H 0.037 0.963 40 H 0.080 0.920 41 H 0.113 0.887 42 H 0.119 0.881 43 H 0.129 0.871 44 H 0.050 0.950 45 H 0.050 0.950 46 H 0.028 0.972 47 H 0.028 0.972 48 H 0.263 0.737 49 H 0.128 0.872 50 H 0.081 0.919 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.547 11.057 26.374 29.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.094 4.094 3 C -0.193 4.193 4 C -0.165 4.165 5 C -0.125 4.125 6 C -0.060 4.060 7 N -0.312 5.312 8 C -0.026 4.026 9 C -0.052 4.052 10 C -0.186 4.186 11 C -0.099 4.099 12 C -0.230 4.230 13 C 0.098 3.902 14 O -0.228 6.228 15 C -0.009 4.009 16 C -0.012 4.012 17 C -0.565 4.565 18 H 0.076 0.924 19 C -0.142 4.142 20 N -0.527 5.527 21 Si 0.726 3.274 22 H -0.205 1.205 23 H -0.210 1.210 24 H -0.198 1.198 25 C -0.158 4.158 26 C -0.153 4.153 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.099 0.901 35 H 0.106 0.894 36 H 0.045 0.955 37 H 0.091 0.909 38 H 0.160 0.840 39 H 0.055 0.945 40 H 0.099 0.901 41 H 0.131 0.869 42 H 0.137 0.863 43 H 0.147 0.853 44 H 0.068 0.932 45 H 0.068 0.932 46 H 0.046 0.954 47 H 0.046 0.954 48 H 0.073 0.927 49 H 0.146 0.854 50 H 0.099 0.901 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.138 11.696 25.578 29.017 hybrid contribution -0.379 -1.543 0.058 1.590 sum -7.517 10.152 25.635 28.579 Atomic orbital electron populations 1.21590 0.93328 1.01986 1.01606 1.21851 0.95502 0.94524 0.97567 1.21723 1.00533 0.95547 1.01448 1.23074 1.01024 0.95932 0.96425 1.22472 0.98220 0.94597 0.97186 1.21985 0.98192 0.92989 0.92831 1.60445 1.04779 1.13966 1.52028 1.20832 0.94299 0.91879 0.95565 1.19385 0.97861 0.94348 0.93568 1.20760 1.04200 0.94350 0.99286 1.20836 0.98084 0.98433 0.92541 1.21389 1.05372 0.98455 0.97807 1.19204 0.92463 0.93280 0.85286 1.86178 1.76568 1.44409 1.15682 1.23322 0.99675 0.87388 0.90485 1.19125 0.97629 0.97956 0.86511 1.20971 1.40499 1.01239 0.93751 0.92379 1.24996 0.94900 0.96036 0.98299 1.69980 1.40301 1.26172 1.16264 0.86483 0.78021 0.82246 0.80607 1.20501 1.21046 1.19781 1.20262 1.05244 0.98884 0.91362 1.23065 1.01150 0.94697 0.96384 0.92652 0.92403 0.92379 0.92556 0.92665 0.92837 0.91724 0.90128 0.89374 0.95452 0.90886 0.84033 0.94480 0.90124 0.86861 0.86272 0.85292 0.93175 0.93158 0.95372 0.95387 0.92711 0.85392 0.90057 0.91345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.83 9.07 37.16 0.34 -0.49 16 2 C -0.09 -0.65 1.39 -153.61 -0.21 -0.86 16 3 C -0.14 -0.87 9.20 37.15 0.34 -0.53 16 4 C -0.13 -0.82 6.79 -25.92 -0.18 -1.00 16 5 C -0.11 -0.78 3.54 -89.80 -0.32 -1.10 16 6 C 0.07 0.55 5.51 -3.82 -0.02 0.53 16 7 N -0.68 -6.59 6.49 -115.06 -0.75 -7.34 16 8 C 0.10 1.04 5.81 -4.98 -0.03 1.01 16 9 C -0.05 -0.65 5.39 -104.65 -0.56 -1.22 16 10 C -0.17 -2.03 9.70 -39.56 -0.38 -2.41 16 11 C -0.08 -1.06 10.04 -39.61 -0.40 -1.46 16 12 C -0.21 -3.36 9.04 -39.44 -0.36 -3.72 16 13 C 0.14 2.58 6.69 -39.22 -0.26 2.32 16 14 O -0.32 -6.65 10.14 -19.43 -0.20 -6.85 16 15 C 0.07 1.43 4.68 37.16 0.17 1.60 16 16 C 0.02 0.66 5.34 -27.89 -0.15 0.51 16 17 C -0.53 -14.80 9.11 -34.44 -0.31 -15.11 16 18 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 19 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 20 N -0.89 -26.62 13.29 55.43 0.74 -25.88 16 21 Si 0.90 21.39 29.54 -169.99 -5.02 16.36 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 25 C -0.14 -2.16 9.64 -39.43 -0.38 -2.54 16 26 C -0.12 -0.93 6.76 -25.82 -0.17 -1.11 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.37 8.14 -51.92 -0.42 -0.05 16 29 H 0.06 0.38 7.34 -51.93 -0.38 0.00 16 30 H 0.06 0.36 7.96 -51.93 -0.41 -0.05 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.40 8.10 -51.92 -0.42 -0.02 16 34 H 0.08 0.50 8.06 -51.93 -0.42 0.08 16 35 H 0.09 0.66 7.66 -51.93 -0.40 0.27 16 36 H 0.03 0.20 8.14 -51.93 -0.42 -0.22 16 37 H 0.07 0.60 7.88 -51.93 -0.41 0.20 16 38 H 0.34 3.14 8.72 -39.29 -0.34 2.80 16 39 H 0.04 0.33 8.08 -51.93 -0.42 -0.09 16 40 H 0.08 0.82 8.09 -51.93 -0.42 0.40 16 41 H 0.11 1.09 8.06 -52.49 -0.42 0.67 16 42 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 43 H 0.13 2.02 6.30 -52.48 -0.33 1.69 16 44 H 0.05 1.04 7.67 -51.93 -0.40 0.64 16 45 H 0.05 1.05 7.65 -51.93 -0.40 0.65 16 46 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 48 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 49 H 0.13 1.96 8.06 -52.49 -0.42 1.54 16 50 H 0.08 0.69 7.75 -51.93 -0.40 0.29 16 51 H 0.07 0.62 8.10 -51.93 -0.42 0.20 16 LS Contribution 410.50 15.07 6.19 6.19 Total: -1.00 -29.99 410.50 -11.37 -41.36 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -9.34 Total: 0.12 kcal Atomic # 6 Polarization: -20.98 SS G_CDS: -2.98 Total: -23.96 kcal Atomic # 7 Polarization: -33.21 SS G_CDS: -0.01 Total: -33.22 kcal Atomic # 8 Polarization: -6.65 SS G_CDS: -0.20 Total: -6.85 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -29.99 -11.37 -41.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548045375.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.765 kcal (2) G-P(sol) polarization free energy of solvation -29.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds