Wall clock time and date at job start Tue Mar 31 2020 11:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 112.84782 * 2 1 4 4 C 1.53777 * 113.61502 * 131.19884 * 2 1 3 5 5 C 1.53780 * 87.08124 * 89.11430 * 4 2 1 6 6 C 1.53006 * 113.61097 * 139.98215 * 5 4 2 7 7 N 1.46900 * 109.47078 * 176.52997 * 6 5 4 8 8 C 1.46896 * 111.00195 * 179.97438 * 7 6 5 9 9 C 1.50697 * 109.47382 * 179.97438 * 8 7 6 10 10 C 1.38284 * 119.97210 * 269.97968 * 9 8 7 11 11 C 1.38250 * 120.10839 * 180.02562 * 10 9 8 12 12 C 1.38161 * 120.05581 * 359.68103 * 11 10 9 13 13 C 1.38710 * 119.94432 * 0.61525 * 12 11 10 14 14 O 1.35900 * 120.05544 * 179.67631 * 13 12 11 15 15 C 1.42898 * 117.00172 * 359.72769 * 14 13 12 16 16 C 1.52997 * 109.47319 * 179.97438 * 15 14 13 17 17 C 1.50697 * 109.47466 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99890 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00428 * 179.97438 * 17 16 15 20 20 N 1.31519 * 119.99563 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00432 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46838 * 89.99826 * 21 19 17 23 23 H 1.48497 * 109.47419 * 209.99978 * 21 19 17 24 24 H 1.48499 * 109.47011 * 330.00539 * 21 19 17 25 25 C 1.38129 * 119.97079 * 90.00085 * 9 8 7 26 26 C 1.53783 * 87.17295 * 25.39363 * 5 4 2 27 27 H 1.09001 * 109.47688 * 288.79988 * 1 2 3 28 28 H 1.09007 * 109.47410 * 48.80488 * 1 2 3 29 29 H 1.09003 * 109.47003 * 168.80009 * 1 2 3 30 30 H 1.08996 * 109.47216 * 191.19524 * 3 2 1 31 31 H 1.09000 * 109.47556 * 311.19941 * 3 2 1 32 32 H 1.09005 * 109.47339 * 71.19682 * 3 2 1 33 33 H 1.09008 * 113.61177 * 334.56684 * 4 2 1 34 34 H 1.08997 * 113.61500 * 203.67112 * 4 2 1 35 35 H 1.09000 * 113.61795 * 270.80117 * 5 4 2 36 36 H 1.08996 * 109.47046 * 56.52666 * 6 5 4 37 37 H 1.09006 * 109.46798 * 296.52934 * 6 5 4 38 38 H 1.00901 * 111.00271 * 303.95429 * 7 6 5 39 39 H 1.09005 * 109.46944 * 59.99947 * 8 7 6 40 40 H 1.09002 * 109.47398 * 300.00389 * 8 7 6 41 41 H 1.07994 * 119.94418 * 0.02562 * 10 9 8 42 42 H 1.08002 * 119.97138 * 179.97438 * 11 10 9 43 43 H 1.08006 * 120.02996 * 180.29325 * 12 11 10 44 44 H 1.09002 * 109.47259 * 300.00149 * 15 14 13 45 45 H 1.09001 * 109.47074 * 60.00171 * 15 14 13 46 46 H 1.09002 * 109.47153 * 300.00307 * 16 15 14 47 47 H 1.08998 * 109.47533 * 59.99936 * 16 15 14 48 48 H 0.97002 * 119.99731 * 180.02562 * 20 19 17 49 49 H 1.07998 * 120.02418 * 0.02613 * 25 9 8 50 50 H 1.08995 * 113.61261 * 89.15352 * 26 5 4 51 51 H 1.09003 * 113.61050 * 220.06122 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1240 1.4099 0.0000 4 6 2.1460 -0.9281 1.0602 5 6 2.0929 -2.0425 0.0019 6 6 3.3264 -2.9478 0.0028 7 7 3.1446 -4.0241 -0.9803 8 6 4.3123 -4.9149 -1.0077 9 6 4.0895 -6.0042 -2.0249 10 6 3.4848 -7.1890 -1.6471 11 6 3.2794 -8.1905 -2.5778 12 6 3.6722 -8.0070 -3.8897 13 6 4.2845 -6.8219 -4.2698 14 8 4.6776 -6.6417 -5.5582 15 6 4.4345 -7.7171 -6.4672 16 6 4.9405 -7.3329 -7.8590 17 6 4.6835 -8.4667 -8.8177 18 1 4.2066 -9.3709 -8.4693 19 6 5.0564 -8.3496 -10.1400 20 7 5.6368 -7.2483 -10.5643 21 14 4.7385 -9.7554 -11.3283 22 1 3.3999 -9.5859 -11.9487 23 1 5.7791 -9.7530 -12.3877 24 1 4.7835 -11.0448 -10.5930 25 6 4.4898 -5.8185 -3.3338 26 6 2.1448 -0.9317 -1.0603 27 1 -0.3634 0.3312 0.9728 28 1 -0.3634 0.6769 -0.7733 29 1 -0.3633 -1.0081 -0.1996 30 1 3.1941 1.3533 -0.1995 31 1 1.6414 2.0076 -0.7732 32 1 1.9599 1.8734 0.9728 33 1 1.4944 -1.1068 1.9156 34 1 3.1590 -0.6485 1.3496 35 1 1.1574 -2.6019 0.0033 36 1 3.4591 -3.3801 0.9945 37 1 4.2074 -2.3616 -0.2590 38 1 2.2984 -4.5423 -0.7969 39 1 4.4523 -5.3609 -0.0230 40 1 5.2000 -4.3422 -1.2766 41 1 3.1725 -7.3323 -0.6232 42 1 2.8073 -9.1151 -2.2802 43 1 3.5072 -8.7878 -4.6175 44 1 4.9582 -8.6091 -6.1232 45 1 3.3643 -7.9191 -6.5131 46 1 4.4164 -6.4410 -8.2027 47 1 6.0106 -7.1305 -7.8135 48 1 5.8987 -7.1657 -11.4946 49 1 4.9627 -4.8932 -3.6282 50 1 3.1575 -0.6532 -1.3517 51 1 1.4923 -1.1134 -1.9143 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000548045375.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:29 Heat of formation + Delta-G solvation = -36.945826 kcal Electronic energy + Delta-G solvation = -25149.916377 eV Core-core repulsion = 21627.227660 eV Total energy + Delta-G solvation = -3522.688717 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.09196 -40.67087 -38.86326 -36.64551 -35.46296 -32.97709 -32.58227 -31.27058 -30.50040 -28.27678 -27.55665 -26.88908 -26.55867 -24.82694 -23.52392 -23.23848 -21.80588 -21.30579 -19.14280 -19.04747 -18.14284 -17.11399 -16.94751 -16.88297 -16.55589 -16.45561 -16.32158 -15.72906 -15.28131 -15.05920 -14.72158 -14.50782 -14.33863 -14.31392 -14.20170 -14.01004 -13.58161 -13.47566 -13.08272 -13.01247 -12.83844 -12.67880 -12.66081 -12.60071 -12.54606 -12.40225 -12.20726 -11.86548 -11.64974 -11.58543 -11.54661 -11.40335 -11.34917 -10.88201 -10.78812 -10.63000 -9.82335 -9.30753 -9.07614 -8.27356 -6.41375 0.35171 0.53882 1.40285 1.42866 1.54019 2.27021 2.51236 2.75974 3.06831 3.33522 3.64773 3.78103 3.78606 3.85565 3.92205 4.04224 4.16494 4.22962 4.25610 4.28079 4.36436 4.42072 4.47860 4.55275 4.59909 4.65412 4.72210 4.75186 4.79797 4.82702 4.88219 4.89013 4.95556 5.03662 5.06097 5.07351 5.11276 5.21265 5.30604 5.31105 5.35714 5.44751 5.45294 5.52540 5.61009 5.61535 5.68112 5.70523 5.90240 6.06220 6.10366 6.48793 6.57898 6.73339 7.28729 8.85827 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.016271 B = 0.001907 C = 0.001768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.412766 B =14680.523297 C =15834.685234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.094 4.094 3 C -0.135 4.135 4 C -0.118 4.118 5 C -0.102 4.102 6 C 0.073 3.927 7 N -0.694 5.694 8 C 0.107 3.893 9 C -0.045 4.045 10 C -0.152 4.152 11 C -0.077 4.077 12 C -0.223 4.223 13 C 0.105 3.895 14 O -0.343 6.343 15 C 0.085 3.915 16 C 0.028 3.972 17 C -0.547 4.547 18 H 0.071 0.929 19 C 0.000 4.000 20 N -0.931 5.931 21 Si 0.978 3.022 22 H -0.270 1.270 23 H -0.281 1.281 24 H -0.259 1.259 25 C -0.153 4.153 26 C -0.123 4.123 27 H 0.064 0.936 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.041 0.959 37 H 0.067 0.933 38 H 0.346 0.654 39 H 0.061 0.939 40 H 0.076 0.924 41 H 0.151 0.849 42 H 0.152 0.848 43 H 0.126 0.874 44 H 0.060 0.940 45 H 0.059 0.941 46 H -0.003 1.003 47 H -0.002 1.002 48 H 0.267 0.733 49 H 0.118 0.882 50 H 0.073 0.927 51 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.814 9.602 28.992 31.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.094 4.094 3 C -0.192 4.192 4 C -0.156 4.156 5 C -0.121 4.121 6 C -0.055 4.055 7 N -0.326 5.326 8 C -0.021 4.021 9 C -0.045 4.045 10 C -0.171 4.171 11 C -0.095 4.095 12 C -0.242 4.242 13 C 0.060 3.940 14 O -0.258 6.258 15 C 0.011 3.989 16 C -0.010 4.010 17 C -0.584 4.584 18 H 0.089 0.911 19 C -0.198 4.198 20 N -0.570 5.570 21 Si 0.801 3.199 22 H -0.195 1.195 23 H -0.206 1.206 24 H -0.183 1.183 25 C -0.172 4.172 26 C -0.161 4.161 27 H 0.083 0.917 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.092 0.908 34 H 0.103 0.897 35 H 0.107 0.893 36 H 0.059 0.941 37 H 0.086 0.914 38 H 0.164 0.836 39 H 0.079 0.921 40 H 0.094 0.906 41 H 0.169 0.831 42 H 0.169 0.831 43 H 0.144 0.856 44 H 0.078 0.922 45 H 0.077 0.923 46 H 0.016 0.984 47 H 0.017 0.983 48 H 0.076 0.924 49 H 0.137 0.863 50 H 0.092 0.908 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.416 10.245 28.230 31.189 hybrid contribution 0.002 -1.000 -0.616 1.174 sum -8.413 9.245 27.614 30.312 Atomic orbital electron populations 1.21588 0.92978 1.01818 1.02068 1.21874 0.95794 0.94656 0.97094 1.21720 1.00352 0.95306 1.01847 1.23028 1.01387 0.94954 0.96244 1.22443 0.98041 0.94475 0.97131 1.21965 0.98142 0.92459 0.92957 1.60399 1.04752 1.14297 1.53172 1.20799 0.94372 0.91267 0.95650 1.19697 0.96551 0.95591 0.92696 1.21211 1.01955 0.93107 1.00801 1.21225 0.97097 0.99946 0.91263 1.21502 1.05780 0.97608 0.99346 1.19535 0.95116 0.95309 0.84087 1.86085 1.77976 1.44247 1.17501 1.22844 0.99838 0.87736 0.88468 1.18970 0.95483 0.96778 0.89724 1.21394 1.40645 1.01894 0.94487 0.91075 1.26074 0.94312 0.99006 1.00444 1.70130 1.41329 1.28598 1.16947 0.85258 0.78105 0.78744 0.77788 1.19530 1.20603 1.18271 1.20398 1.06056 0.98270 0.92498 1.23078 1.00500 0.96055 0.96418 0.91700 0.92657 0.92650 0.92741 0.92929 0.91982 0.90849 0.89719 0.89324 0.94105 0.91449 0.83570 0.92132 0.90557 0.83088 0.83068 0.85611 0.92208 0.92307 0.98449 0.98348 0.92428 0.86348 0.90838 0.92937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.51 9.07 71.98 0.65 -0.86 16 2 C -0.09 -1.20 1.39 -51.60 -0.07 -1.27 16 3 C -0.13 -1.61 9.20 71.98 0.66 -0.95 16 4 C -0.12 -1.31 6.79 31.12 0.21 -1.10 16 5 C -0.10 -1.37 3.54 -10.26 -0.04 -1.40 16 6 C 0.07 1.03 5.51 86.31 0.48 1.51 16 7 N -0.69 -12.18 6.49 -517.93 -3.36 -15.54 16 8 C 0.11 1.95 5.81 85.56 0.50 2.44 16 9 C -0.04 -1.07 5.39 -19.88 -0.11 -1.18 16 10 C -0.15 -3.15 9.70 22.28 0.22 -2.94 16 11 C -0.08 -1.82 10.04 22.25 0.22 -1.60 16 12 C -0.22 -6.98 9.04 22.36 0.20 -6.78 16 13 C 0.10 3.85 6.69 22.50 0.15 4.00 16 14 O -0.34 -15.34 10.14 -92.43 -0.94 -16.28 16 15 C 0.09 3.89 4.68 71.98 0.34 4.22 16 16 C 0.03 1.56 5.34 29.85 0.16 1.71 16 17 C -0.55 -31.39 9.11 25.60 0.23 -31.16 16 18 H 0.07 3.80 7.74 -2.91 -0.02 3.78 16 19 C 0.00 0.01 5.46 84.65 0.46 0.47 16 20 N -0.93 -57.43 13.29 21.45 0.28 -57.14 16 21 Si 0.98 43.96 29.54 68.60 2.03 45.99 16 22 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 23 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 24 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 25 C -0.15 -4.86 9.64 22.37 0.22 -4.64 16 26 C -0.12 -1.97 6.76 31.18 0.21 -1.76 16 27 H 0.06 0.64 8.14 -2.39 -0.02 0.63 16 28 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 29 H 0.05 0.68 7.34 -2.39 -0.02 0.66 16 30 H 0.05 0.66 7.96 -2.39 -0.02 0.64 16 31 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 33 H 0.07 0.71 8.10 -2.38 -0.02 0.69 16 34 H 0.08 0.89 8.06 -2.39 -0.02 0.87 16 35 H 0.09 1.19 7.66 -2.39 -0.02 1.18 16 36 H 0.04 0.48 8.14 -2.39 -0.02 0.46 16 37 H 0.07 1.03 7.88 -2.38 -0.02 1.01 16 38 H 0.35 5.52 8.72 -89.69 -0.78 4.74 16 39 H 0.06 0.84 8.08 -2.38 -0.02 0.82 16 40 H 0.08 1.46 8.09 -2.39 -0.02 1.44 16 41 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 42 H 0.15 2.57 8.06 -2.91 -0.02 2.55 16 43 H 0.13 3.91 6.30 -2.91 -0.02 3.89 16 44 H 0.06 2.55 7.67 -2.39 -0.02 2.53 16 45 H 0.06 2.52 7.65 -2.39 -0.02 2.50 16 46 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 47 H 0.00 -0.12 8.14 -2.39 -0.02 -0.13 16 48 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 49 H 0.12 3.85 8.06 -2.91 -0.02 3.83 16 50 H 0.07 1.27 7.75 -2.39 -0.02 1.25 16 51 H 0.05 0.99 8.10 -2.39 -0.02 0.97 16 Total: -1.00 -67.31 410.50 2.80 -64.51 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: 0.10 Total: 19.75 kcal Atomic # 6 Polarization: -45.98 SS G_CDS: 4.69 Total: -41.29 kcal Atomic # 7 Polarization: -69.61 SS G_CDS: -3.08 Total: -72.69 kcal Atomic # 8 Polarization: -15.34 SS G_CDS: -0.94 Total: -16.28 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -67.31 2.80 -64.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548045375.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.566 kcal (2) G-P(sol) polarization free energy of solvation -67.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds