Wall clock time and date at job start Tue Mar 31 2020 12:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46753 * 2 1 4 4 C 1.53002 * 109.47064 * 240.00499 * 2 1 3 5 5 C 1.50694 * 109.47200 * 120.00520 * 2 1 3 6 6 C 1.38360 * 119.85722 * 60.00297 * 5 2 1 7 7 C 1.37957 * 120.14382 * 180.25691 * 6 5 2 8 8 C 1.39576 * 119.85528 * 359.51406 * 7 6 5 9 9 C 1.47845 * 120.14298 * 180.21013 * 8 7 6 10 10 O 1.21557 * 119.99523 * 180.29012 * 9 8 7 11 11 N 1.34771 * 120.00437 * 0.29770 * 9 8 7 12 12 C 1.46493 * 120.00235 * 179.97438 * 11 9 8 13 13 C 1.53008 * 109.47247 * 179.97438 * 12 11 9 14 14 C 1.53003 * 109.46889 * 299.99929 * 13 12 11 15 15 C 1.52998 * 109.46913 * 59.99958 * 13 12 11 16 16 C 1.52995 * 109.47067 * 180.02562 * 13 12 11 17 17 C 1.50697 * 109.47145 * 179.97438 * 16 13 12 18 18 H 1.08008 * 119.99817 * 359.97438 * 17 16 13 19 19 C 1.37877 * 120.00357 * 180.02562 * 17 16 13 20 20 N 1.31517 * 119.99788 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00078 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47299 * 60.00157 * 21 19 17 23 23 H 1.48504 * 109.46969 * 179.97438 * 21 19 17 24 24 H 1.48506 * 109.47300 * 299.99992 * 21 19 17 25 25 C 1.39579 * 119.70688 * 0.50129 * 8 7 6 26 26 C 1.37955 * 119.85778 * 359.73229 * 25 8 7 27 27 H 1.08992 * 109.47077 * 299.99285 * 1 2 3 28 28 H 1.08999 * 109.46905 * 59.99753 * 1 2 3 29 29 H 1.09000 * 109.46800 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46702 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47617 * 300.00369 * 3 2 1 32 32 H 1.09005 * 109.46855 * 60.00591 * 3 2 1 33 33 H 1.09000 * 109.47340 * 299.99704 * 4 2 1 34 34 H 1.09000 * 109.47010 * 59.99812 * 4 2 1 35 35 H 1.09003 * 109.46945 * 179.97438 * 4 2 1 36 36 H 1.08002 * 119.92305 * 359.97238 * 6 5 2 37 37 H 1.08004 * 120.06851 * 179.74094 * 7 6 5 38 38 H 0.97006 * 119.99552 * 359.97438 * 11 9 8 39 39 H 1.08998 * 109.47295 * 300.00129 * 12 11 9 40 40 H 1.09003 * 109.46891 * 60.00262 * 12 11 9 41 41 H 1.08999 * 109.46774 * 60.00064 * 14 13 12 42 42 H 1.09001 * 109.47116 * 179.97438 * 14 13 12 43 43 H 1.08994 * 109.47512 * 300.00426 * 14 13 12 44 44 H 1.08998 * 109.46850 * 60.00164 * 15 13 12 45 45 H 1.09001 * 109.46866 * 180.02562 * 15 13 12 46 46 H 1.08999 * 109.46974 * 300.00074 * 15 13 12 47 47 H 1.08998 * 109.47229 * 300.00162 * 16 13 12 48 48 H 1.09009 * 109.47303 * 59.99987 * 16 13 12 49 49 H 0.96998 * 119.99607 * 179.97438 * 20 19 17 50 50 H 1.08003 * 120.06670 * 179.70533 * 25 8 7 51 51 H 1.07997 * 119.92668 * 179.97438 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 2.0324 -0.7105 1.2303 6 6 1.6964 -2.0352 1.4462 7 6 2.1486 -2.6898 2.5732 8 6 2.9552 -2.0159 3.4916 9 6 3.4472 -2.7126 4.6992 10 8 4.1451 -2.1215 5.4999 11 7 3.1221 -4.0031 4.9122 12 6 3.6101 -4.6936 6.1084 13 6 3.1002 -6.1362 6.1083 14 6 1.5702 -6.1363 6.1079 15 6 3.6107 -6.8574 4.8592 16 6 3.6094 -6.8572 7.3580 17 6 3.1067 -8.2778 7.3583 18 1 2.4857 -8.6310 6.5482 19 6 3.4385 -9.1264 8.3930 20 7 4.1943 -8.6962 9.3796 21 14 2.8148 -10.8872 8.3936 22 1 3.3102 -11.5882 7.1819 23 1 3.3091 -11.5870 9.6065 24 1 1.3297 -10.8863 8.3926 25 6 3.2901 -0.6794 3.2679 26 6 2.8273 -0.0350 2.1394 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6767 1.9563 0.8901 33 1 1.6768 -1.7488 -1.2494 34 1 1.6767 -0.2072 -2.1392 35 1 3.1301 -0.7207 -1.2495 36 1 1.0749 -2.5565 0.7331 37 1 1.8822 -3.7227 2.7426 38 1 2.5649 -4.4747 4.2732 39 1 4.7001 -4.6931 6.1090 40 1 3.2460 -4.1800 6.9983 41 1 1.2072 -5.6225 5.2178 42 1 1.2069 -7.1640 6.1074 43 1 1.2065 -5.6224 6.9976 44 1 4.7006 -6.8573 4.8596 45 1 3.2470 -7.8850 4.8589 46 1 3.2475 -6.3436 3.9692 47 1 4.6994 -6.8570 7.3588 48 1 3.2454 -6.3432 8.2477 49 1 4.4274 -9.2931 10.1078 50 1 3.9099 -0.1509 3.9772 51 1 3.0854 0.9992 1.9654 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000554079420.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:59 Heat of formation + Delta-G solvation = -46.953366 kcal Electronic energy + Delta-G solvation = -26357.234504 eV Core-core repulsion = 22834.111828 eV Total energy + Delta-G solvation = -3523.122676 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.47649 -39.22146 -37.18488 -36.26875 -33.69771 -32.17861 -31.29756 -30.40694 -27.76186 -27.63007 -27.13600 -26.52639 -26.29292 -24.08724 -22.79121 -22.31342 -20.60521 -19.42177 -18.74179 -17.49301 -16.35347 -16.19667 -15.71072 -15.09001 -15.04384 -14.91622 -14.63732 -14.48554 -13.99453 -13.93350 -13.67082 -13.62256 -13.12961 -12.99818 -12.84311 -12.73543 -12.39670 -12.25634 -12.09306 -12.05510 -12.03415 -11.70149 -11.33060 -11.15966 -11.09789 -11.01083 -10.87538 -10.81925 -10.63870 -10.41136 -10.27569 -9.88500 -9.85386 -9.18167 -9.17852 -8.98777 -8.94068 -8.66451 -8.35859 -5.99949 -4.01395 0.72807 1.18937 2.90027 3.31792 3.37161 3.37497 3.42039 3.78363 4.17627 4.33760 4.44898 4.60017 4.69677 4.74002 4.85450 4.92153 5.14648 5.15560 5.23469 5.35301 5.35622 5.37318 5.46664 5.49028 5.49855 5.55554 5.61686 5.64821 5.72023 5.75937 5.79227 5.85814 5.90987 6.14517 6.15269 6.19120 6.22399 6.32246 6.34242 6.38244 6.54816 6.61630 6.68645 6.75908 7.04657 7.06312 7.11571 7.63419 7.73463 7.75959 7.98468 8.38267 8.42267 9.03031 9.61565 11.11437 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.027761 B = 0.002261 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.362818 B =12379.733833 C =13010.509915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.033 4.033 3 C -0.146 4.146 4 C -0.139 4.139 5 C -0.051 4.051 6 C -0.124 4.124 7 C -0.084 4.084 8 C -0.133 4.133 9 C 0.549 3.451 10 O -0.543 6.543 11 N -0.716 5.716 12 C 0.128 3.872 13 C -0.073 4.073 14 C -0.127 4.127 15 C -0.127 4.127 16 C 0.036 3.964 17 C -0.512 4.512 18 H 0.059 0.941 19 C 0.056 3.944 20 N -0.894 5.894 21 Si 0.890 3.110 22 H -0.278 1.278 23 H -0.288 1.288 24 H -0.278 1.278 25 C -0.059 4.059 26 C -0.131 4.131 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.057 0.943 36 H 0.126 0.874 37 H 0.126 0.874 38 H 0.397 0.603 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.027 0.973 42 H 0.067 0.933 43 H 0.048 0.952 44 H 0.048 0.952 45 H 0.067 0.933 46 H 0.027 0.973 47 H 0.019 0.981 48 H 0.019 0.981 49 H 0.261 0.739 50 H 0.135 0.865 51 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.791 17.729 -21.336 28.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.033 4.033 3 C -0.203 4.203 4 C -0.196 4.196 5 C -0.051 4.051 6 C -0.142 4.142 7 C -0.103 4.103 8 C -0.136 4.136 9 C 0.336 3.664 10 O -0.422 6.422 11 N -0.367 5.367 12 C 0.005 3.995 13 C -0.073 4.073 14 C -0.185 4.185 15 C -0.185 4.185 16 C -0.001 4.001 17 C -0.550 4.550 18 H 0.077 0.923 19 C -0.145 4.145 20 N -0.533 5.533 21 Si 0.718 3.282 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.203 1.203 25 C -0.078 4.078 26 C -0.149 4.149 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.144 0.856 37 H 0.144 0.856 38 H 0.234 0.766 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.046 0.954 42 H 0.086 0.914 43 H 0.067 0.933 44 H 0.067 0.933 45 H 0.086 0.914 46 H 0.046 0.954 47 H 0.037 0.963 48 H 0.037 0.963 49 H 0.070 0.930 50 H 0.153 0.847 51 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -6.203 18.059 -20.564 28.062 hybrid contribution -0.547 -1.342 -0.114 1.454 sum -6.750 16.717 -20.678 27.433 Atomic orbital electron populations 1.21898 0.93432 1.02270 1.02029 1.19566 0.95899 0.95171 0.92658 1.21983 1.01339 0.94851 1.02092 1.21899 1.01390 1.00298 0.96044 1.20013 0.95920 0.93864 0.95306 1.20891 1.01162 0.94385 0.97714 1.21319 0.95769 0.99618 0.93571 1.20071 1.01710 0.95495 0.96293 1.18304 0.80529 0.82013 0.85529 1.90761 1.38323 1.66324 1.46810 1.46139 1.52958 1.11411 1.26196 1.21667 0.99024 0.92857 0.85962 1.20912 0.95468 0.91642 0.99278 1.21768 0.95279 1.02232 0.99185 1.21766 1.00626 1.01084 0.94988 1.19086 0.96384 0.94582 0.90063 1.21137 1.31266 0.95948 1.06641 0.92322 1.25019 0.95331 0.98459 0.95730 1.69957 1.36885 1.35920 1.10582 0.86701 0.79126 0.85077 0.77320 1.20340 1.21407 1.20336 1.21294 0.96866 0.93074 0.96543 1.21165 0.98906 1.00525 0.94267 0.92356 0.92238 0.92264 0.92111 0.92273 0.92115 0.92260 0.92240 0.92358 0.85613 0.85638 0.76630 0.91645 0.91651 0.95366 0.91359 0.93286 0.93285 0.91362 0.95359 0.96307 0.96309 0.92978 0.84711 0.85074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.82 8.29 37.16 0.31 -0.52 16 2 C -0.03 -0.21 0.85 -155.66 -0.13 -0.35 16 3 C -0.15 -0.82 7.13 37.16 0.26 -0.56 16 4 C -0.14 -0.82 8.29 37.16 0.31 -0.52 16 5 C -0.05 -0.44 4.77 -104.53 -0.50 -0.94 16 6 C -0.12 -1.10 8.69 -39.64 -0.34 -1.44 16 7 C -0.08 -0.88 9.54 -39.19 -0.37 -1.25 16 8 C -0.13 -1.71 5.87 -104.97 -0.62 -2.33 16 9 C 0.55 8.83 7.77 -12.33 -0.10 8.73 16 10 O -0.54 -10.69 16.35 5.32 0.09 -10.60 16 11 N -0.72 -10.86 4.91 -61.25 -0.30 -11.16 16 12 C 0.13 2.30 4.56 -4.04 -0.02 2.28 16 13 C -0.07 -1.38 0.54 -154.51 -0.08 -1.46 16 14 C -0.13 -2.23 8.05 37.16 0.30 -1.93 16 15 C -0.13 -2.23 8.05 37.16 0.30 -1.93 16 16 C 0.04 0.89 4.04 -27.89 -0.11 0.78 16 17 C -0.51 -13.55 7.65 -34.44 -0.26 -13.81 16 18 H 0.06 1.49 5.68 -52.48 -0.30 1.19 16 19 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 20 N -0.89 -26.42 13.29 55.43 0.74 -25.68 16 21 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 C -0.06 -0.69 9.60 -39.18 -0.38 -1.07 16 26 C -0.13 -1.23 8.96 -39.64 -0.36 -1.58 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.34 7.38 -51.93 -0.38 -0.04 16 30 H 0.06 0.34 7.51 -51.93 -0.39 -0.05 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.34 7.50 -51.93 -0.39 -0.05 16 33 H 0.06 0.34 7.38 -51.93 -0.38 -0.04 16 34 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.13 0.87 7.08 -52.49 -0.37 0.50 16 37 H 0.13 1.12 6.41 -52.48 -0.34 0.78 16 38 H 0.40 5.10 4.20 -40.82 -0.17 4.92 16 39 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 40 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 41 H 0.03 0.40 6.86 -51.93 -0.36 0.04 16 42 H 0.07 1.28 6.62 -51.93 -0.34 0.94 16 43 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.07 1.28 6.62 -51.93 -0.34 0.94 16 46 H 0.03 0.40 6.86 -51.93 -0.36 0.04 16 47 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 48 H 0.02 0.50 8.14 -51.92 -0.42 0.07 16 49 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 50 H 0.14 1.62 7.65 -52.48 -0.40 1.22 16 51 H 0.13 0.97 5.87 -52.49 -0.31 0.66 16 LS Contribution 394.97 15.07 5.95 5.95 Total: -1.00 -31.09 394.97 -9.05 -40.14 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -8.62 Total: 1.63 kcal Atomic # 6 Polarization: -14.55 SS G_CDS: -1.89 Total: -16.44 kcal Atomic # 7 Polarization: -37.28 SS G_CDS: 0.44 Total: -36.84 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.09 Total: -10.60 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -31.09 -9.05 -40.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554079420.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.809 kcal (2) G-P(sol) polarization free energy of solvation -31.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds