Wall clock time and date at job start Tue Mar 31 2020 12:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46753 * 2 1 4 4 C 1.53002 * 109.47064 * 240.00499 * 2 1 3 5 5 C 1.50694 * 109.47200 * 120.00520 * 2 1 3 6 6 C 1.38360 * 119.85722 * 60.00297 * 5 2 1 7 7 C 1.37957 * 120.14382 * 180.25691 * 6 5 2 8 8 C 1.39576 * 119.85528 * 359.51406 * 7 6 5 9 9 C 1.47845 * 120.14298 * 180.21013 * 8 7 6 10 10 O 1.21557 * 119.99523 * 180.29012 * 9 8 7 11 11 N 1.34771 * 120.00437 * 0.29770 * 9 8 7 12 12 C 1.46493 * 120.00235 * 179.97438 * 11 9 8 13 13 C 1.53008 * 109.47247 * 179.97438 * 12 11 9 14 14 C 1.53003 * 109.46889 * 299.99929 * 13 12 11 15 15 C 1.52998 * 109.46913 * 59.99958 * 13 12 11 16 16 C 1.52995 * 109.47067 * 180.02562 * 13 12 11 17 17 C 1.50697 * 109.47145 * 179.97438 * 16 13 12 18 18 H 1.08008 * 119.99817 * 359.97438 * 17 16 13 19 19 C 1.37877 * 120.00357 * 180.02562 * 17 16 13 20 20 N 1.31517 * 119.99788 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00078 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47299 * 60.00157 * 21 19 17 23 23 H 1.48504 * 109.46969 * 179.97438 * 21 19 17 24 24 H 1.48506 * 109.47300 * 299.99992 * 21 19 17 25 25 C 1.39579 * 119.70688 * 0.50129 * 8 7 6 26 26 C 1.37955 * 119.85778 * 359.73229 * 25 8 7 27 27 H 1.08992 * 109.47077 * 299.99285 * 1 2 3 28 28 H 1.08999 * 109.46905 * 59.99753 * 1 2 3 29 29 H 1.09000 * 109.46800 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46702 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47617 * 300.00369 * 3 2 1 32 32 H 1.09005 * 109.46855 * 60.00591 * 3 2 1 33 33 H 1.09000 * 109.47340 * 299.99704 * 4 2 1 34 34 H 1.09000 * 109.47010 * 59.99812 * 4 2 1 35 35 H 1.09003 * 109.46945 * 179.97438 * 4 2 1 36 36 H 1.08002 * 119.92305 * 359.97238 * 6 5 2 37 37 H 1.08004 * 120.06851 * 179.74094 * 7 6 5 38 38 H 0.97006 * 119.99552 * 359.97438 * 11 9 8 39 39 H 1.08998 * 109.47295 * 300.00129 * 12 11 9 40 40 H 1.09003 * 109.46891 * 60.00262 * 12 11 9 41 41 H 1.08999 * 109.46774 * 60.00064 * 14 13 12 42 42 H 1.09001 * 109.47116 * 179.97438 * 14 13 12 43 43 H 1.08994 * 109.47512 * 300.00426 * 14 13 12 44 44 H 1.08998 * 109.46850 * 60.00164 * 15 13 12 45 45 H 1.09001 * 109.46866 * 180.02562 * 15 13 12 46 46 H 1.08999 * 109.46974 * 300.00074 * 15 13 12 47 47 H 1.08998 * 109.47229 * 300.00162 * 16 13 12 48 48 H 1.09009 * 109.47303 * 59.99987 * 16 13 12 49 49 H 0.96998 * 119.99607 * 179.97438 * 20 19 17 50 50 H 1.08003 * 120.06670 * 179.70533 * 25 8 7 51 51 H 1.07997 * 119.92668 * 179.97438 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 2.0324 -0.7105 1.2303 6 6 1.6964 -2.0352 1.4462 7 6 2.1486 -2.6898 2.5732 8 6 2.9552 -2.0159 3.4916 9 6 3.4472 -2.7126 4.6992 10 8 4.1451 -2.1215 5.4999 11 7 3.1221 -4.0031 4.9122 12 6 3.6101 -4.6936 6.1084 13 6 3.1002 -6.1362 6.1083 14 6 1.5702 -6.1363 6.1079 15 6 3.6107 -6.8574 4.8592 16 6 3.6094 -6.8572 7.3580 17 6 3.1067 -8.2778 7.3583 18 1 2.4857 -8.6310 6.5482 19 6 3.4385 -9.1264 8.3930 20 7 4.1943 -8.6962 9.3796 21 14 2.8148 -10.8872 8.3936 22 1 3.3102 -11.5882 7.1819 23 1 3.3091 -11.5870 9.6065 24 1 1.3297 -10.8863 8.3926 25 6 3.2901 -0.6794 3.2679 26 6 2.8273 -0.0350 2.1394 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6767 1.9563 0.8901 33 1 1.6768 -1.7488 -1.2494 34 1 1.6767 -0.2072 -2.1392 35 1 3.1301 -0.7207 -1.2495 36 1 1.0749 -2.5565 0.7331 37 1 1.8822 -3.7227 2.7426 38 1 2.5649 -4.4747 4.2732 39 1 4.7001 -4.6931 6.1090 40 1 3.2460 -4.1800 6.9983 41 1 1.2072 -5.6225 5.2178 42 1 1.2069 -7.1640 6.1074 43 1 1.2065 -5.6224 6.9976 44 1 4.7006 -6.8573 4.8596 45 1 3.2470 -7.8850 4.8589 46 1 3.2475 -6.3436 3.9692 47 1 4.6994 -6.8570 7.3588 48 1 3.2454 -6.3432 8.2477 49 1 4.4274 -9.2931 10.1078 50 1 3.9099 -0.1509 3.9772 51 1 3.0854 0.9992 1.9654 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000554079420.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:58 Heat of formation + Delta-G solvation = -63.005918 kcal Electronic energy + Delta-G solvation = -26357.930595 eV Core-core repulsion = 22834.111828 eV Total energy + Delta-G solvation = -3523.818767 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.45867 -40.26068 -38.67378 -37.02558 -35.32677 -34.01650 -32.09841 -31.29021 -29.09352 -28.24321 -28.04951 -27.97813 -27.66301 -25.39793 -24.28713 -23.15485 -21.75151 -20.18605 -20.03851 -18.78181 -18.35436 -17.27224 -16.59624 -16.48508 -16.45890 -15.89518 -15.76285 -15.24848 -15.13802 -15.05217 -14.77750 -14.56923 -14.39018 -14.20810 -13.94406 -13.90322 -13.58957 -13.53780 -12.90768 -12.82268 -12.75610 -12.74478 -12.59452 -12.49087 -12.36280 -12.33837 -12.22550 -12.01280 -11.80473 -11.69798 -11.55321 -11.37834 -11.24156 -10.93118 -10.82387 -10.50467 -10.20494 -9.94874 -9.66597 -8.13521 -6.21584 -0.15461 0.41962 1.42935 1.45212 1.52369 1.82701 2.14279 2.45297 2.86793 3.20698 3.54841 3.74912 3.79410 3.94971 4.00893 4.05890 4.13489 4.14449 4.20401 4.37313 4.42727 4.52032 4.66718 4.69345 4.74561 4.82770 4.84179 4.85079 4.94131 4.95423 5.02367 5.06801 5.08614 5.08779 5.11106 5.12406 5.26246 5.33025 5.35635 5.39587 5.44613 5.48447 5.49287 5.50046 5.51795 5.56192 5.66515 5.79124 5.89526 5.93519 6.29821 6.51968 6.93184 7.16554 7.46046 8.98806 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.027761 B = 0.002261 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.362818 B =12379.733833 C =13010.509915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.032 4.032 3 C -0.148 4.148 4 C -0.139 4.139 5 C -0.043 4.043 6 C -0.122 4.122 7 C -0.081 4.081 8 C -0.156 4.156 9 C 0.548 3.452 10 O -0.590 6.590 11 N -0.703 5.703 12 C 0.140 3.860 13 C -0.064 4.064 14 C -0.123 4.123 15 C -0.123 4.123 16 C 0.040 3.960 17 C -0.513 4.513 18 H 0.074 0.926 19 C -0.007 4.007 20 N -0.939 5.939 21 Si 0.960 3.040 22 H -0.266 1.266 23 H -0.292 1.292 24 H -0.266 1.266 25 C -0.073 4.073 26 C -0.131 4.131 27 H 0.050 0.950 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.050 0.950 36 H 0.153 0.847 37 H 0.144 0.856 38 H 0.412 0.588 39 H 0.047 0.953 40 H 0.047 0.953 41 H 0.069 0.931 42 H 0.059 0.941 43 H 0.036 0.964 44 H 0.036 0.964 45 H 0.059 0.941 46 H 0.069 0.931 47 H -0.014 1.014 48 H -0.014 1.014 49 H 0.259 0.741 50 H 0.121 0.879 51 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.154 17.561 -25.099 31.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.032 4.032 3 C -0.205 4.205 4 C -0.196 4.196 5 C -0.043 4.043 6 C -0.139 4.139 7 C -0.100 4.100 8 C -0.159 4.159 9 C 0.337 3.663 10 O -0.472 6.472 11 N -0.355 5.355 12 C 0.016 3.984 13 C -0.064 4.064 14 C -0.180 4.180 15 C -0.180 4.180 16 C 0.002 3.998 17 C -0.551 4.551 18 H 0.092 0.908 19 C -0.204 4.204 20 N -0.580 5.580 21 Si 0.785 3.215 22 H -0.191 1.191 23 H -0.218 1.218 24 H -0.191 1.191 25 C -0.092 4.092 26 C -0.148 4.148 27 H 0.070 0.930 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.070 0.930 36 H 0.171 0.829 37 H 0.162 0.838 38 H 0.251 0.749 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.087 0.913 42 H 0.078 0.922 43 H 0.056 0.944 44 H 0.056 0.944 45 H 0.078 0.922 46 H 0.088 0.912 47 H 0.004 0.996 48 H 0.004 0.996 49 H 0.068 0.932 50 H 0.139 0.861 51 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -8.598 17.883 -24.373 31.429 hybrid contribution 0.190 -1.171 0.990 1.545 sum -8.408 16.712 -23.383 29.945 Atomic orbital electron populations 1.21904 0.92669 1.02657 1.02357 1.19632 0.96403 0.95402 0.91783 1.22004 1.01311 0.94475 1.02668 1.21904 1.00978 1.00624 0.96082 1.20377 0.94448 0.93980 0.95527 1.21207 1.00786 0.94484 0.97450 1.21505 0.94803 1.00384 0.93260 1.19862 1.04128 0.95984 0.95952 1.18864 0.79544 0.81819 0.86024 1.90733 1.40499 1.67279 1.48688 1.45882 1.52949 1.11295 1.25364 1.21271 0.97873 0.92492 0.86736 1.20709 0.96783 0.91509 0.97419 1.21708 0.93485 1.02090 1.00697 1.21707 0.99969 1.00769 0.95535 1.18970 0.94283 0.94790 0.91738 1.21552 1.30494 0.96499 1.06591 0.90795 1.25980 0.95697 1.03199 0.95509 1.70123 1.38772 1.37550 1.11538 0.85570 0.78965 0.79541 0.77381 1.19092 1.21812 1.19081 1.21322 0.97430 0.93044 0.97406 1.21355 0.98671 1.01356 0.93468 0.93036 0.90988 0.91860 0.92239 0.91091 0.92241 0.91856 0.90990 0.93038 0.82947 0.83850 0.74875 0.93494 0.93503 0.91252 0.92231 0.94438 0.94433 0.92233 0.91247 0.99605 0.99610 0.93198 0.86137 0.83353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 8.29 71.98 0.60 -0.58 16 2 C -0.03 -0.32 0.85 -52.93 -0.05 -0.36 16 3 C -0.15 -1.27 7.13 71.98 0.51 -0.76 16 4 C -0.14 -1.17 8.29 71.98 0.60 -0.58 16 5 C -0.04 -0.62 4.77 -19.81 -0.09 -0.72 16 6 C -0.12 -1.75 8.69 22.23 0.19 -1.56 16 7 C -0.08 -1.47 9.54 22.53 0.21 -1.26 16 8 C -0.16 -3.91 5.87 -20.09 -0.12 -4.03 16 9 C 0.55 17.79 7.77 86.79 0.67 18.47 16 10 O -0.59 -24.33 16.35 -3.89 -0.06 -24.40 16 11 N -0.70 -20.82 4.91 -465.98 -2.29 -23.10 16 12 C 0.14 5.21 4.56 86.38 0.39 5.60 16 13 C -0.06 -2.43 0.54 -52.18 -0.03 -2.46 16 14 C -0.12 -4.12 8.05 71.98 0.58 -3.54 16 15 C -0.12 -4.12 8.05 71.98 0.58 -3.54 16 16 C 0.04 2.04 4.04 29.85 0.12 2.16 16 17 C -0.51 -27.49 7.65 25.60 0.20 -27.29 16 18 H 0.07 3.67 5.68 -2.91 -0.02 3.65 16 19 C -0.01 -0.40 5.46 84.65 0.46 0.07 16 20 N -0.94 -57.40 13.29 21.45 0.28 -57.11 16 21 Si 0.96 43.55 29.54 68.60 2.03 45.58 16 22 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 23 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 24 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 25 C -0.07 -1.71 9.60 22.53 0.22 -1.50 16 26 C -0.13 -2.26 8.96 22.23 0.20 -2.07 16 27 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.06 0.49 7.38 -2.39 -0.02 0.47 16 30 H 0.06 0.53 7.51 -2.39 -0.02 0.52 16 31 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.06 0.53 7.50 -2.38 -0.02 0.52 16 33 H 0.06 0.49 7.38 -2.39 -0.02 0.47 16 34 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 35 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 36 H 0.15 1.40 7.08 -2.91 -0.02 1.38 16 37 H 0.14 1.99 6.41 -2.91 -0.02 1.98 16 38 H 0.41 9.44 4.20 -92.70 -0.39 9.06 16 39 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.07 1.75 6.86 -2.39 -0.02 1.73 16 42 H 0.06 2.12 6.62 -2.39 -0.02 2.10 16 43 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.06 2.11 6.62 -2.39 -0.02 2.10 16 46 H 0.07 1.75 6.86 -2.39 -0.02 1.73 16 47 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 48 H -0.01 -0.83 8.14 -2.38 -0.02 -0.85 16 49 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 50 H 0.12 3.08 7.65 -2.91 -0.02 3.06 16 51 H 0.15 1.97 5.87 -2.91 -0.02 1.95 16 Total: -1.00 -70.85 394.97 5.73 -65.12 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: 0.52 Total: 17.85 kcal Atomic # 6 Polarization: -29.18 SS G_CDS: 5.25 Total: -23.93 kcal Atomic # 7 Polarization: -78.22 SS G_CDS: -2.00 Total: -80.22 kcal Atomic # 8 Polarization: -24.33 SS G_CDS: -0.06 Total: -24.40 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -70.85 5.73 -65.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554079420.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.116 kcal (2) G-P(sol) polarization free energy of solvation -70.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds