Wall clock time and date at job start Tue Mar 31 2020 11:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46907 * 110.99582 * 2 1 4 4 C 1.52997 * 109.47326 * 293.95623 * 3 2 1 5 5 C 1.52997 * 109.47224 * 180.02562 * 4 3 2 6 6 C 1.50701 * 109.46909 * 179.97438 * 5 4 3 7 7 H 1.07996 * 120.00528 * 359.97438 * 6 5 4 8 8 C 1.37881 * 119.99573 * 180.02562 * 6 5 4 9 9 N 1.31520 * 119.99680 * 180.02562 * 8 6 5 10 10 Si 1.86795 * 120.00105 * 359.97438 * 8 6 5 11 11 H 1.48500 * 109.47427 * 90.00132 * 10 8 6 12 12 H 1.48507 * 109.46933 * 210.00066 * 10 8 6 13 13 H 1.48500 * 109.47137 * 329.99762 * 10 8 6 14 14 C 1.46897 * 111.00229 * 123.95461 * 2 1 3 15 15 H 1.09003 * 112.84870 * 290.08644 * 14 2 1 16 16 C 1.53780 * 113.61531 * 61.27850 * 14 2 1 17 17 C 1.53778 * 87.07789 * 140.06771 * 16 14 2 18 18 H 1.08993 * 113.61556 * 89.20523 * 17 16 14 19 19 O 1.42904 * 113.60980 * 220.01891 * 17 16 14 20 20 C 1.35897 * 117.00142 * 274.23866 * 19 17 16 21 21 C 1.38729 * 120.05551 * 5.28512 * 20 19 17 22 22 C 1.38146 * 119.94543 * 179.74193 * 21 20 19 23 23 C 1.38266 * 120.05582 * 0.25446 * 22 21 20 24 24 C 1.38271 * 120.10920 * 359.97438 * 23 22 21 25 25 C 1.38140 * 120.05547 * 0.02562 * 24 23 22 26 26 C 1.53778 * 87.17568 * 334.61032 * 17 16 14 27 27 C 1.53001 * 113.61470 * 139.94030 * 26 17 16 28 28 C 1.53000 * 113.61401 * 270.84705 * 26 17 16 29 29 H 1.08998 * 109.47625 * 301.69438 * 1 2 3 30 30 H 1.08999 * 109.47192 * 61.70601 * 1 2 3 31 31 H 1.09003 * 109.46417 * 181.70046 * 1 2 3 32 32 H 1.09004 * 109.46793 * 53.95063 * 3 2 1 33 33 H 1.09000 * 109.47107 * 173.95386 * 3 2 1 34 34 H 1.09006 * 109.46828 * 300.00252 * 4 3 2 35 35 H 1.09000 * 109.47221 * 59.99833 * 4 3 2 36 36 H 1.09001 * 109.46955 * 299.99933 * 5 4 3 37 37 H 1.09000 * 109.47164 * 59.99791 * 5 4 3 38 38 H 0.96997 * 119.99576 * 180.02562 * 9 8 6 39 39 H 1.09003 * 113.61246 * 25.51589 * 16 14 2 40 40 H 1.09005 * 113.61486 * 254.61545 * 16 14 2 41 41 H 1.08001 * 120.03287 * 0.02562 * 21 20 19 42 42 H 1.07996 * 119.97453 * 180.27477 * 22 21 20 43 43 H 1.08001 * 119.94656 * 179.97438 * 23 22 21 44 44 H 1.08003 * 119.96719 * 180.02562 * 24 23 22 45 45 H 1.08002 * 120.02600 * 180.02562 * 25 24 23 46 46 H 1.09003 * 109.47063 * 79.50659 * 27 26 17 47 47 H 1.09000 * 109.46956 * 199.50569 * 27 26 17 48 48 H 1.08993 * 109.47002 * 319.50700 * 27 26 17 49 49 H 1.08998 * 109.47508 * 64.05875 * 28 26 17 50 50 H 1.09003 * 109.46970 * 184.05731 * 28 26 17 51 51 H 1.09004 * 109.46972 * 304.05078 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0576 -1.3182 5 6 2.1801 3.4857 -1.3184 6 6 1.8220 4.1612 -2.6171 7 1 1.2597 3.6254 -3.3675 8 6 2.2133 5.4631 -2.8478 9 7 1.9003 6.0527 -3.9810 10 14 3.1865 6.3897 -1.5503 11 1 4.6388 6.1758 -1.7741 12 1 2.8796 7.8397 -1.6431 13 1 2.8146 5.8904 -0.2021 14 6 1.9955 -0.7660 1.1375 15 1 1.8252 -0.2732 2.0948 16 6 1.5842 -2.2477 1.1257 17 6 3.0106 -2.5661 1.6040 18 1 3.1175 -2.5670 2.6886 19 8 3.5744 -3.7268 0.9899 20 6 3.2925 -4.9265 1.5629 21 6 2.4030 -4.9972 2.6251 22 6 2.1140 -6.2186 3.2023 23 6 2.7145 -7.3692 2.7257 24 6 3.6050 -7.3007 1.6702 25 6 3.8973 -6.0818 1.0895 26 6 3.4449 -1.2472 0.9432 27 6 4.4689 -0.4592 1.7626 28 6 3.8479 -1.4008 -0.5248 29 1 -0.3634 0.5399 0.8744 30 1 -0.3633 0.4871 -0.9049 31 1 -0.3632 -1.0273 0.0305 32 1 1.5609 1.9274 0.8309 33 1 3.0797 1.3446 0.1082 34 1 2.0657 1.5016 -2.1492 35 1 0.5471 2.0845 -1.4264 36 1 1.7461 4.0418 -0.4875 37 1 3.2644 3.4584 -1.2104 38 1 2.1759 6.9685 -4.1434 39 1 1.3617 -2.6311 0.1299 40 1 0.8136 -2.4928 1.8567 41 1 1.9333 -4.0989 2.9975 42 1 1.4182 -6.2748 4.0264 43 1 2.4876 -8.3231 3.1786 44 1 4.0724 -8.2010 1.2994 45 1 4.5926 -6.0289 0.2648 46 1 5.4598 -0.8891 1.6162 47 1 4.4722 0.5809 1.4366 48 1 4.2041 -0.5081 2.8188 49 1 2.9835 -1.7187 -1.1076 50 1 4.2103 -0.4452 -0.9039 51 1 4.6373 -2.1478 -0.6086 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000554304883.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:31 Heat of formation + Delta-G solvation = 2.353318 kcal Electronic energy + Delta-G solvation = -26843.463542 eV Core-core repulsion = 23322.478964 eV Total energy + Delta-G solvation = -3520.984578 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.10545 -39.46347 -37.31266 -35.73242 -33.41345 -31.61346 -31.32755 -30.47186 -29.98637 -27.38373 -27.27861 -26.26123 -24.27547 -22.92989 -22.48874 -22.13791 -20.99464 -19.91057 -18.48729 -18.42117 -16.67972 -16.55785 -16.12118 -15.64221 -15.45971 -15.18637 -14.62579 -14.56372 -14.21920 -14.03526 -13.73889 -13.66283 -13.38832 -13.10364 -13.03878 -12.60557 -12.45377 -12.21460 -12.09985 -11.94516 -11.83086 -11.78246 -11.62705 -11.34524 -11.26186 -11.06226 -10.92600 -10.83393 -10.74849 -10.35113 -10.10607 -9.86746 -9.64731 -9.52536 -9.28199 -9.14339 -8.51370 -8.41332 -8.15131 -6.01782 -3.99203 1.06175 1.19228 2.97329 3.31546 3.38726 3.42146 3.52595 4.09052 4.20231 4.25257 4.44534 4.46945 4.55851 4.61021 4.65801 4.85379 5.06127 5.10456 5.14223 5.22944 5.27101 5.31982 5.35533 5.41549 5.46575 5.54662 5.64061 5.68066 5.72708 5.74675 5.81414 5.92269 5.97137 5.99384 6.07853 6.09896 6.13108 6.15004 6.19875 6.25345 6.37037 6.51925 6.55565 6.57324 6.66319 6.94080 7.25497 7.26982 7.28158 7.39056 7.49542 7.83072 8.57788 9.04110 9.60963 11.11809 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.029784 B = 0.002337 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.871508 B =11977.442231 C =12169.878605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.521 5.521 3 C 0.053 3.947 4 C -0.096 4.096 5 C -0.013 4.013 6 C -0.517 4.517 7 H 0.071 0.929 8 C 0.064 3.936 9 N -0.905 5.905 10 Si 0.880 3.120 11 H -0.277 1.277 12 H -0.289 1.289 13 H -0.267 1.267 14 C 0.063 3.937 15 H 0.065 0.935 16 C -0.148 4.148 17 C 0.065 3.935 18 H 0.092 0.908 19 O -0.293 6.293 20 C 0.136 3.864 21 C -0.208 4.208 22 C -0.082 4.082 23 C -0.165 4.165 24 C -0.082 4.082 25 C -0.156 4.156 26 C -0.052 4.052 27 C -0.143 4.143 28 C -0.110 4.110 29 H 0.021 0.979 30 H 0.077 0.923 31 H 0.061 0.939 32 H 0.026 0.974 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.052 0.948 36 H 0.012 0.988 37 H 0.010 0.990 38 H 0.262 0.738 39 H 0.103 0.897 40 H 0.068 0.932 41 H 0.126 0.874 42 H 0.122 0.878 43 H 0.121 0.879 44 H 0.127 0.873 45 H 0.129 0.871 46 H 0.061 0.939 47 H 0.067 0.933 48 H 0.052 0.948 49 H 0.069 0.931 50 H 0.061 0.939 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.096 -25.371 16.511 30.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.245 5.245 3 C -0.074 4.074 4 C -0.134 4.134 5 C -0.051 4.051 6 C -0.555 4.555 7 H 0.090 0.910 8 C -0.137 4.137 9 N -0.544 5.544 10 Si 0.708 3.292 11 H -0.203 1.203 12 H -0.215 1.215 13 H -0.191 1.191 14 C -0.046 4.046 15 H 0.082 0.918 16 C -0.186 4.186 17 C 0.008 3.992 18 H 0.110 0.890 19 O -0.206 6.206 20 C 0.090 3.910 21 C -0.227 4.227 22 C -0.100 4.100 23 C -0.183 4.183 24 C -0.100 4.100 25 C -0.175 4.175 26 C -0.053 4.053 27 C -0.200 4.200 28 C -0.167 4.167 29 H 0.039 0.961 30 H 0.095 0.905 31 H 0.080 0.920 32 H 0.044 0.956 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.071 0.929 36 H 0.030 0.970 37 H 0.028 0.972 38 H 0.072 0.928 39 H 0.121 0.879 40 H 0.087 0.913 41 H 0.144 0.856 42 H 0.140 0.860 43 H 0.139 0.861 44 H 0.144 0.856 45 H 0.147 0.853 46 H 0.080 0.920 47 H 0.085 0.915 48 H 0.071 0.929 49 H 0.088 0.912 50 H 0.080 0.920 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.379 -25.367 15.809 29.985 hybrid contribution -0.006 1.119 1.637 1.983 sum 2.372 -24.249 17.446 29.967 Atomic orbital electron populations 1.22383 0.87628 1.01151 1.01309 1.62176 1.07526 1.14820 1.39978 1.22355 0.99735 0.86387 0.98900 1.21459 1.00497 0.96783 0.94699 1.19547 0.95643 0.92284 0.97599 1.21145 1.35423 0.97806 1.01102 0.91041 1.25051 0.95760 0.97565 0.95282 1.69923 1.47092 1.13280 1.24084 0.86774 0.80682 0.78902 0.82870 1.20306 1.21469 1.19136 1.22962 0.95239 0.93175 0.93256 0.91772 1.23626 0.95959 0.95863 1.03139 1.24073 0.94589 0.83680 0.96829 0.89029 1.86174 1.69983 1.12139 1.52341 1.19089 0.93690 0.86075 0.92102 1.21322 1.02539 0.99232 0.99584 1.20956 0.98286 0.92039 0.98736 1.21039 0.99883 0.98426 0.98972 1.20966 0.96843 0.96835 0.95373 1.20490 1.03344 0.90415 1.03236 1.22082 0.94383 0.91068 0.97726 1.21851 0.98731 1.00618 0.98804 1.21284 1.01663 1.01643 0.92124 0.96062 0.90459 0.92032 0.95557 0.91114 0.91994 0.92881 0.96990 0.97160 0.92814 0.87892 0.91317 0.85579 0.86041 0.86144 0.85556 0.85267 0.92038 0.91454 0.92858 0.91182 0.92040 0.92745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.17 60.07 0.55 0.85 16 2 N -0.52 -7.12 3.64 -233.79 -0.85 -7.97 16 3 C 0.05 0.85 4.88 -3.82 -0.02 0.83 16 4 C -0.10 -1.91 5.08 -26.73 -0.14 -2.04 16 5 C -0.01 -0.31 4.04 -27.88 -0.11 -0.42 16 6 C -0.52 -14.89 9.66 -34.44 -0.33 -15.22 16 7 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 8 C 0.06 1.89 5.47 -17.82 -0.10 1.80 16 9 N -0.90 -28.19 13.96 55.43 0.77 -27.42 16 10 Si 0.88 21.93 27.47 -169.99 -4.67 17.26 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 13 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 14 C 0.06 0.72 2.60 -66.81 -0.17 0.54 16 15 H 0.06 0.72 8.10 -51.93 -0.42 0.30 16 16 C -0.15 -1.49 5.62 -25.92 -0.15 -1.64 16 17 C 0.07 0.65 2.63 -25.92 -0.07 0.59 16 18 H 0.09 0.82 7.02 -51.93 -0.36 0.45 16 19 O -0.29 -3.34 9.05 -19.42 -0.18 -3.52 16 20 C 0.14 1.44 6.67 -39.22 -0.26 1.18 16 21 C -0.21 -1.93 8.92 -39.43 -0.35 -2.28 16 22 C -0.08 -0.67 10.04 -39.60 -0.40 -1.06 16 23 C -0.16 -1.27 10.04 -39.56 -0.40 -1.67 16 24 C -0.08 -0.66 10.04 -39.61 -0.40 -1.05 16 25 C -0.16 -1.49 9.99 -39.43 -0.39 -1.89 16 26 C -0.05 -0.58 0.90 -153.61 -0.14 -0.71 16 27 C -0.14 -1.47 9.12 37.16 0.34 -1.13 16 28 C -0.11 -1.37 7.99 37.16 0.30 -1.07 16 29 H 0.02 0.26 8.13 -51.93 -0.42 -0.16 16 30 H 0.08 1.07 6.55 -51.93 -0.34 0.73 16 31 H 0.06 0.68 7.17 -51.93 -0.37 0.31 16 32 H 0.03 0.42 8.11 -51.93 -0.42 0.00 16 33 H 0.07 1.12 6.26 -51.93 -0.32 0.79 16 34 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.05 1.05 6.59 -51.93 -0.34 0.71 16 36 H 0.01 0.29 7.20 -51.93 -0.37 -0.09 16 37 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 38 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 39 H 0.10 1.17 7.71 -51.93 -0.40 0.77 16 40 H 0.07 0.60 7.85 -51.93 -0.41 0.19 16 41 H 0.13 1.04 5.77 -52.49 -0.30 0.74 16 42 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 43 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 44 H 0.13 0.71 8.06 -52.48 -0.42 0.29 16 45 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 46 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.07 0.75 6.93 -51.93 -0.36 0.39 16 48 H 0.05 0.48 8.01 -51.93 -0.42 0.06 16 49 H 0.07 0.94 7.06 -51.93 -0.37 0.58 16 50 H 0.06 0.83 7.92 -51.93 -0.41 0.42 16 51 H 0.05 0.66 7.68 -51.93 -0.40 0.26 16 LS Contribution 394.18 15.07 5.94 5.94 Total: -1.00 -31.07 394.18 -10.18 -41.24 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -8.96 Total: -1.12 kcal Atomic # 6 Polarization: -22.18 SS G_CDS: -2.24 Total: -24.42 kcal Atomic # 7 Polarization: -35.31 SS G_CDS: -0.08 Total: -35.39 kcal Atomic # 8 Polarization: -3.34 SS G_CDS: -0.18 Total: -3.52 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.67 Total: 17.26 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.07 -10.18 -41.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554304883.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.598 kcal (2) G-P(sol) polarization free energy of solvation -31.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds