Wall clock time and date at job start Tue Mar 31 2020 11:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46907 * 110.99582 * 2 1 4 4 C 1.52997 * 109.47326 * 293.95623 * 3 2 1 5 5 C 1.52997 * 109.47224 * 180.02562 * 4 3 2 6 6 C 1.50701 * 109.46909 * 179.97438 * 5 4 3 7 7 H 1.07996 * 120.00528 * 359.97438 * 6 5 4 8 8 C 1.37881 * 119.99573 * 180.02562 * 6 5 4 9 9 N 1.31520 * 119.99680 * 180.02562 * 8 6 5 10 10 Si 1.86795 * 120.00105 * 359.97438 * 8 6 5 11 11 H 1.48500 * 109.47427 * 90.00132 * 10 8 6 12 12 H 1.48507 * 109.46933 * 210.00066 * 10 8 6 13 13 H 1.48500 * 109.47137 * 329.99762 * 10 8 6 14 14 C 1.46897 * 111.00229 * 123.95461 * 2 1 3 15 15 H 1.09003 * 112.84870 * 290.08644 * 14 2 1 16 16 C 1.53780 * 113.61531 * 61.27850 * 14 2 1 17 17 C 1.53778 * 87.07789 * 140.06771 * 16 14 2 18 18 H 1.08993 * 113.61556 * 89.20523 * 17 16 14 19 19 O 1.42904 * 113.60980 * 220.01891 * 17 16 14 20 20 C 1.35897 * 117.00142 * 274.23866 * 19 17 16 21 21 C 1.38729 * 120.05551 * 5.28512 * 20 19 17 22 22 C 1.38146 * 119.94543 * 179.74193 * 21 20 19 23 23 C 1.38266 * 120.05582 * 0.25446 * 22 21 20 24 24 C 1.38271 * 120.10920 * 359.97438 * 23 22 21 25 25 C 1.38140 * 120.05547 * 0.02562 * 24 23 22 26 26 C 1.53778 * 87.17568 * 334.61032 * 17 16 14 27 27 C 1.53001 * 113.61470 * 139.94030 * 26 17 16 28 28 C 1.53000 * 113.61401 * 270.84705 * 26 17 16 29 29 H 1.08998 * 109.47625 * 301.69438 * 1 2 3 30 30 H 1.08999 * 109.47192 * 61.70601 * 1 2 3 31 31 H 1.09003 * 109.46417 * 181.70046 * 1 2 3 32 32 H 1.09004 * 109.46793 * 53.95063 * 3 2 1 33 33 H 1.09000 * 109.47107 * 173.95386 * 3 2 1 34 34 H 1.09006 * 109.46828 * 300.00252 * 4 3 2 35 35 H 1.09000 * 109.47221 * 59.99833 * 4 3 2 36 36 H 1.09001 * 109.46955 * 299.99933 * 5 4 3 37 37 H 1.09000 * 109.47164 * 59.99791 * 5 4 3 38 38 H 0.96997 * 119.99576 * 180.02562 * 9 8 6 39 39 H 1.09003 * 113.61246 * 25.51589 * 16 14 2 40 40 H 1.09005 * 113.61486 * 254.61545 * 16 14 2 41 41 H 1.08001 * 120.03287 * 0.02562 * 21 20 19 42 42 H 1.07996 * 119.97453 * 180.27477 * 22 21 20 43 43 H 1.08001 * 119.94656 * 179.97438 * 23 22 21 44 44 H 1.08003 * 119.96719 * 180.02562 * 24 23 22 45 45 H 1.08002 * 120.02600 * 180.02562 * 25 24 23 46 46 H 1.09003 * 109.47063 * 79.50659 * 27 26 17 47 47 H 1.09000 * 109.46956 * 199.50569 * 27 26 17 48 48 H 1.08993 * 109.47002 * 319.50700 * 27 26 17 49 49 H 1.08998 * 109.47508 * 64.05875 * 28 26 17 50 50 H 1.09003 * 109.46970 * 184.05731 * 28 26 17 51 51 H 1.09004 * 109.46972 * 304.05078 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0576 -1.3182 5 6 2.1801 3.4857 -1.3184 6 6 1.8220 4.1612 -2.6171 7 1 1.2597 3.6254 -3.3675 8 6 2.2133 5.4631 -2.8478 9 7 1.9003 6.0527 -3.9810 10 14 3.1865 6.3897 -1.5503 11 1 4.6388 6.1758 -1.7741 12 1 2.8796 7.8397 -1.6431 13 1 2.8146 5.8904 -0.2021 14 6 1.9955 -0.7660 1.1375 15 1 1.8252 -0.2732 2.0948 16 6 1.5842 -2.2477 1.1257 17 6 3.0106 -2.5661 1.6040 18 1 3.1175 -2.5670 2.6886 19 8 3.5744 -3.7268 0.9899 20 6 3.2925 -4.9265 1.5629 21 6 2.4030 -4.9972 2.6251 22 6 2.1140 -6.2186 3.2023 23 6 2.7145 -7.3692 2.7257 24 6 3.6050 -7.3007 1.6702 25 6 3.8973 -6.0818 1.0895 26 6 3.4449 -1.2472 0.9432 27 6 4.4689 -0.4592 1.7626 28 6 3.8479 -1.4008 -0.5248 29 1 -0.3634 0.5399 0.8744 30 1 -0.3633 0.4871 -0.9049 31 1 -0.3632 -1.0273 0.0305 32 1 1.5609 1.9274 0.8309 33 1 3.0797 1.3446 0.1082 34 1 2.0657 1.5016 -2.1492 35 1 0.5471 2.0845 -1.4264 36 1 1.7461 4.0418 -0.4875 37 1 3.2644 3.4584 -1.2104 38 1 2.1759 6.9685 -4.1434 39 1 1.3617 -2.6311 0.1299 40 1 0.8136 -2.4928 1.8567 41 1 1.9333 -4.0989 2.9975 42 1 1.4182 -6.2748 4.0264 43 1 2.4876 -8.3231 3.1786 44 1 4.0724 -8.2010 1.2994 45 1 4.5926 -6.0289 0.2648 46 1 5.4598 -0.8891 1.6162 47 1 4.4722 0.5809 1.4366 48 1 4.2041 -0.5081 2.8188 49 1 2.9835 -1.7187 -1.1076 50 1 4.2103 -0.4452 -0.9039 51 1 4.6373 -2.1478 -0.6086 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000554304883.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:31 Heat of formation + Delta-G solvation = -13.603315 kcal Electronic energy + Delta-G solvation = -26844.155474 eV Core-core repulsion = 23322.478964 eV Total energy + Delta-G solvation = -3521.676510 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.91893 -40.21440 -38.18472 -36.87286 -35.27151 -33.37405 -32.03340 -31.42387 -30.65523 -28.87828 -28.30648 -27.37656 -25.41057 -23.80752 -23.57057 -22.92589 -22.13482 -21.49683 -19.34110 -19.17678 -18.86327 -17.36414 -16.80861 -16.60702 -16.40164 -16.35990 -15.98961 -15.49216 -15.39893 -15.24161 -14.76570 -14.69527 -14.36727 -14.25163 -14.12461 -13.90251 -13.61214 -13.34094 -13.14369 -13.11376 -12.95231 -12.71576 -12.62010 -12.56665 -12.41936 -12.36104 -12.02511 -11.93322 -11.78757 -11.65118 -11.45077 -11.38119 -11.30076 -11.03775 -10.91292 -10.75560 -9.90383 -9.22277 -9.09124 -8.28921 -6.32946 0.44126 0.54753 1.35556 1.37475 1.49547 2.22871 2.36431 2.89207 3.06141 3.06254 3.36277 3.40043 3.61962 3.77942 3.98820 4.05124 4.14187 4.24930 4.28312 4.30951 4.35240 4.46247 4.54071 4.56668 4.57620 4.61136 4.66141 4.71459 4.79434 4.81245 4.87616 4.88884 4.97314 4.99920 5.04266 5.12173 5.13421 5.14161 5.16794 5.19918 5.39969 5.48204 5.51354 5.53918 5.60347 5.62003 5.64941 5.67583 5.93870 6.12159 6.25989 6.31609 6.56665 6.75319 7.31316 8.88095 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.029784 B = 0.002337 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.871508 B =11977.442231 C =12169.878605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.531 5.531 3 C 0.068 3.932 4 C -0.087 4.087 5 C -0.009 4.009 6 C -0.531 4.531 7 H 0.028 0.972 8 C 0.000 4.000 9 N -0.953 5.953 10 Si 0.954 3.046 11 H -0.266 1.266 12 H -0.284 1.284 13 H -0.245 1.245 14 C 0.062 3.938 15 H 0.078 0.922 16 C -0.139 4.139 17 C 0.073 3.927 18 H 0.109 0.891 19 O -0.311 6.311 20 C 0.113 3.887 21 C -0.216 4.216 22 C -0.088 4.088 23 C -0.167 4.167 24 C -0.086 4.086 25 C -0.175 4.175 26 C -0.057 4.057 27 C -0.141 4.141 28 C -0.103 4.103 29 H 0.028 0.972 30 H 0.058 0.942 31 H 0.079 0.921 32 H 0.032 0.968 33 H 0.074 0.926 34 H 0.045 0.955 35 H 0.045 0.955 36 H 0.018 0.982 37 H 0.018 0.982 38 H 0.266 0.734 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.136 0.864 42 H 0.144 0.856 43 H 0.144 0.856 44 H 0.148 0.852 45 H 0.128 0.872 46 H 0.061 0.939 47 H 0.057 0.943 48 H 0.070 0.930 49 H 0.054 0.946 50 H 0.046 0.954 51 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.527 -26.725 20.018 33.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.255 5.255 3 C -0.060 4.060 4 C -0.125 4.125 5 C -0.047 4.047 6 C -0.569 4.569 7 H 0.046 0.954 8 C -0.197 4.197 9 N -0.594 5.594 10 Si 0.777 3.223 11 H -0.191 1.191 12 H -0.210 1.210 13 H -0.168 1.168 14 C -0.046 4.046 15 H 0.095 0.905 16 C -0.177 4.177 17 C 0.016 3.984 18 H 0.127 0.873 19 O -0.225 6.225 20 C 0.067 3.933 21 C -0.234 4.234 22 C -0.106 4.106 23 C -0.185 4.185 24 C -0.103 4.103 25 C -0.194 4.194 26 C -0.058 4.058 27 C -0.198 4.198 28 C -0.160 4.160 29 H 0.047 0.953 30 H 0.077 0.923 31 H 0.097 0.903 32 H 0.050 0.950 33 H 0.093 0.907 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.037 0.963 37 H 0.036 0.964 38 H 0.074 0.926 39 H 0.105 0.895 40 H 0.107 0.893 41 H 0.153 0.847 42 H 0.162 0.838 43 H 0.162 0.838 44 H 0.166 0.834 45 H 0.146 0.854 46 H 0.080 0.920 47 H 0.076 0.924 48 H 0.089 0.911 49 H 0.074 0.926 50 H 0.065 0.935 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.803 -26.752 19.324 33.121 hybrid contribution -0.195 1.415 0.441 1.494 sum 2.608 -25.338 19.765 32.241 Atomic orbital electron populations 1.22372 0.87050 1.02200 1.00687 1.62077 1.08144 1.13491 1.41782 1.22064 1.00065 0.87546 0.96332 1.21265 0.99686 0.94834 0.96683 1.19482 0.96166 0.94142 0.94874 1.21502 1.34834 0.98200 1.02366 0.95382 1.26089 0.97041 0.98702 0.97840 1.70085 1.48776 1.13931 1.26580 0.85605 0.79150 0.77213 0.80343 1.19102 1.20991 1.16837 1.23043 0.95325 0.93526 0.92715 0.90481 1.23535 0.96752 0.94556 1.02863 1.24039 0.94046 0.82864 0.97448 0.87327 1.86138 1.70500 1.12754 1.53095 1.19327 0.94907 0.85886 0.93131 1.21491 1.02374 1.00227 0.99320 1.21299 0.98430 0.91711 0.99128 1.21403 0.99137 0.99451 0.98548 1.21276 0.96782 0.97005 0.95279 1.20700 1.03852 0.91051 1.03754 1.22086 0.94602 0.92243 0.96824 1.21833 0.98559 0.99754 0.99631 1.21165 1.00919 1.00619 0.93326 0.95336 0.92300 0.90252 0.95003 0.90723 0.93605 0.93581 0.96330 0.96362 0.92550 0.89488 0.89337 0.84650 0.83837 0.83820 0.83436 0.85408 0.91953 0.92413 0.91084 0.92646 0.93526 0.92811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.60 9.17 127.69 1.17 1.77 16 2 N -0.53 -13.97 3.64 -893.58 -3.25 -17.22 16 3 C 0.07 2.08 4.88 86.30 0.42 2.51 16 4 C -0.09 -3.46 5.08 30.59 0.16 -3.31 16 5 C -0.01 -0.41 4.04 29.85 0.12 -0.29 16 6 C -0.53 -31.48 9.66 25.60 0.25 -31.23 16 7 H 0.03 1.84 7.99 -2.91 -0.02 1.81 16 8 C 0.00 -0.03 5.47 84.65 0.46 0.44 16 9 N -0.95 -61.03 13.96 21.45 0.30 -60.73 16 10 Si 0.95 44.85 27.47 68.60 1.88 46.74 16 11 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 12 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 13 H -0.24 -10.59 6.54 99.48 0.65 -9.94 16 14 C 0.06 1.30 2.60 45.50 0.12 1.42 16 15 H 0.08 1.46 8.10 -2.39 -0.02 1.45 16 16 C -0.14 -2.53 5.62 31.12 0.18 -2.36 16 17 C 0.07 1.33 2.63 31.12 0.08 1.41 16 18 H 0.11 1.62 7.02 -2.39 -0.02 1.61 16 19 O -0.31 -6.86 9.05 -92.39 -0.84 -7.70 16 20 C 0.11 2.27 6.67 22.51 0.15 2.42 16 21 C -0.22 -3.57 8.92 22.37 0.20 -3.37 16 22 C -0.09 -1.20 10.04 22.25 0.22 -0.97 16 23 C -0.17 -2.15 10.04 22.28 0.22 -1.93 16 24 C -0.09 -1.22 10.04 22.25 0.22 -1.00 16 25 C -0.17 -3.23 9.99 22.36 0.22 -3.01 16 26 C -0.06 -1.18 0.90 -51.60 -0.05 -1.23 16 27 C -0.14 -2.63 9.12 71.98 0.66 -1.97 16 28 C -0.10 -2.58 7.99 71.98 0.58 -2.01 16 29 H 0.03 0.65 8.13 -2.39 -0.02 0.63 16 30 H 0.06 1.64 6.55 -2.39 -0.02 1.62 16 31 H 0.08 1.63 7.17 -2.39 -0.02 1.61 16 32 H 0.03 0.96 8.11 -2.39 -0.02 0.94 16 33 H 0.07 2.26 6.26 -2.39 -0.01 2.24 16 34 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 35 H 0.05 1.87 6.59 -2.39 -0.02 1.86 16 36 H 0.02 0.86 7.20 -2.39 -0.02 0.84 16 37 H 0.02 0.83 7.57 -2.39 -0.02 0.82 16 38 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 39 H 0.09 1.90 7.71 -2.39 -0.02 1.89 16 40 H 0.09 1.27 7.85 -2.38 -0.02 1.25 16 41 H 0.14 1.87 5.77 -2.91 -0.02 1.85 16 42 H 0.14 1.25 8.06 -2.91 -0.02 1.22 16 43 H 0.14 1.12 8.06 -2.91 -0.02 1.10 16 44 H 0.15 1.35 8.06 -2.91 -0.02 1.32 16 45 H 0.13 2.24 8.06 -2.91 -0.02 2.22 16 46 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 47 H 0.06 1.19 6.93 -2.39 -0.02 1.17 16 48 H 0.07 1.07 8.01 -2.39 -0.02 1.05 16 49 H 0.05 1.53 7.06 -2.39 -0.02 1.51 16 50 H 0.05 1.28 7.92 -2.39 -0.02 1.26 16 51 H 0.05 1.32 7.68 -2.38 -0.02 1.30 16 Total: -1.00 -68.86 394.18 4.30 -64.56 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: 0.82 Total: 17.07 kcal Atomic # 6 Polarization: -48.10 SS G_CDS: 5.38 Total: -42.72 kcal Atomic # 7 Polarization: -75.00 SS G_CDS: -2.95 Total: -77.95 kcal Atomic # 8 Polarization: -6.86 SS G_CDS: -0.84 Total: -7.70 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 1.88 Total: 46.74 kcal Total: -68.86 4.30 -64.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554304883.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.958 kcal (2) G-P(sol) polarization free energy of solvation -68.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds