Wall clock time and date at job start Tue Mar 31 2020 11:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46899 * 110.99980 * 2 1 4 4 C 1.52999 * 109.47338 * 293.95426 * 3 2 1 5 5 C 1.53000 * 109.47217 * 179.97438 * 4 3 2 6 6 C 1.50701 * 109.46811 * 180.02562 * 5 4 3 7 7 H 1.08001 * 120.00382 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99869 * 180.02562 * 6 5 4 9 9 N 1.31509 * 119.99989 * 179.97438 * 8 6 5 10 10 Si 1.86803 * 119.99973 * 359.97438 * 8 6 5 11 11 H 1.48498 * 109.47015 * 90.00083 * 10 8 6 12 12 H 1.48493 * 109.47175 * 210.00278 * 10 8 6 13 13 H 1.48499 * 109.47209 * 330.00232 * 10 8 6 14 14 C 1.46897 * 111.00186 * 123.95374 * 2 1 3 15 15 H 1.09004 * 112.85230 * 298.37141 * 14 2 1 16 16 C 1.53782 * 113.61630 * 167.17565 * 14 2 1 17 17 C 1.53957 * 87.01734 * 220.04830 * 16 14 2 18 18 H 1.09003 * 113.66270 * 139.93451 * 17 16 14 19 19 O 1.42906 * 113.61323 * 270.79704 * 17 16 14 20 20 C 1.35901 * 116.99824 * 254.69281 * 19 17 16 21 21 C 1.38731 * 120.05857 * 5.41126 * 20 19 17 22 22 C 1.38149 * 119.94096 * 179.70088 * 21 20 19 23 23 C 1.38264 * 120.05457 * 0.60432 * 22 21 20 24 24 C 1.38263 * 120.11194 * 359.67562 * 23 22 21 25 25 C 1.38140 * 120.05793 * 0.02562 * 24 23 22 26 26 C 1.53770 * 87.11313 * 25.36331 * 17 16 14 27 27 C 1.53001 * 113.61355 * 220.08945 * 26 17 16 28 28 C 1.52999 * 113.61925 * 89.18584 * 26 17 16 29 29 H 1.08998 * 109.47028 * 62.91756 * 1 2 3 30 30 H 1.08995 * 109.47220 * 182.92261 * 1 2 3 31 31 H 1.09003 * 109.46742 * 302.91982 * 1 2 3 32 32 H 1.09001 * 109.47310 * 173.95488 * 3 2 1 33 33 H 1.08998 * 109.47449 * 53.95490 * 3 2 1 34 34 H 1.09007 * 109.46937 * 300.00129 * 4 3 2 35 35 H 1.09001 * 109.46870 * 59.99793 * 4 3 2 36 36 H 1.08994 * 109.47225 * 299.99677 * 5 4 3 37 37 H 1.08995 * 109.47066 * 60.00411 * 5 4 3 38 38 H 0.97002 * 119.99830 * 179.97438 * 9 8 6 39 39 H 1.08997 * 113.61551 * 334.56507 * 16 14 2 40 40 H 1.09000 * 113.61576 * 105.47203 * 16 14 2 41 41 H 1.07998 * 120.02956 * 0.02562 * 21 20 19 42 42 H 1.07995 * 119.97132 * 180.32316 * 22 21 20 43 43 H 1.08000 * 119.93939 * 179.70155 * 23 22 21 44 44 H 1.08004 * 119.96880 * 180.02562 * 24 23 22 45 45 H 1.07998 * 120.02936 * 180.02562 * 25 24 23 46 46 H 1.09008 * 109.47447 * 157.49791 * 27 26 17 47 47 H 1.09001 * 109.47442 * 277.49494 * 27 26 17 48 48 H 1.09002 * 109.47462 * 37.49746 * 27 26 17 49 49 H 1.09000 * 109.46924 * 326.88753 * 28 26 17 50 50 H 1.08999 * 109.47228 * 86.88308 * 28 26 17 51 51 H 1.08994 * 109.47364 * 206.88889 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0575 -1.3182 5 6 2.1792 3.4861 -1.3179 6 6 1.8201 4.1619 -2.6161 7 1 1.2578 3.6260 -3.3665 8 6 2.2103 5.4642 -2.8464 9 7 1.8974 6.0538 -3.9794 10 14 3.1834 6.3909 -1.5488 11 1 4.6358 6.1781 -1.7734 12 1 2.8755 7.8407 -1.6407 13 1 2.8125 5.8906 -0.2007 14 6 1.9954 -0.7660 1.1376 15 1 1.7015 -0.3491 2.1009 16 6 3.4988 -1.0716 1.0315 17 6 3.1728 -2.4672 1.5938 18 1 3.7328 -3.2723 1.1179 19 8 3.2111 -2.5327 3.0208 20 6 4.2826 -3.1529 3.5814 21 6 5.3302 -3.5878 2.7827 22 6 6.4210 -4.2124 3.3558 23 6 6.4635 -4.4153 4.7228 24 6 5.4180 -3.9880 5.5203 25 6 4.3278 -3.3574 4.9529 26 6 1.7570 -2.2809 1.0234 27 6 0.6516 -2.7986 1.9458 28 6 1.6076 -2.7708 -0.4183 29 1 -0.3633 0.4679 -0.9150 30 1 -0.3633 -1.0263 0.0524 31 1 -0.3633 0.5585 0.8627 32 1 3.0797 1.3444 0.1082 33 1 1.5611 1.9274 0.8309 34 1 2.0658 1.5015 -2.1492 35 1 0.5471 2.0845 -1.4265 36 1 1.7445 4.0417 -0.4871 37 1 3.2634 3.4594 -1.2096 38 1 2.1716 6.9701 -4.1412 39 1 3.8696 -1.0895 0.0067 40 1 4.1155 -0.4656 1.6953 41 1 5.2954 -3.4335 1.7143 42 1 7.2391 -4.5464 2.7351 43 1 7.3150 -4.9081 5.1683 44 1 5.4538 -4.1474 6.5880 45 1 3.5116 -3.0235 5.5763 46 1 -0.2877 -2.3022 1.7016 47 1 0.5397 -3.8744 1.8107 48 1 0.9150 -2.5880 2.9824 49 1 2.5431 -2.6121 -0.9548 50 1 1.3650 -3.8334 -0.4177 51 1 0.8084 -2.2159 -0.9097 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000554304884.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:34 Heat of formation + Delta-G solvation = 7.427540 kcal Electronic energy + Delta-G solvation = -26772.050203 eV Core-core repulsion = 23251.285660 eV Total energy + Delta-G solvation = -3520.764543 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.15741 -39.48007 -37.31085 -35.73070 -33.33341 -31.43455 -31.28270 -30.89281 -29.96864 -27.50108 -27.25609 -26.15003 -24.10730 -23.04012 -22.80430 -22.02277 -21.04376 -19.87390 -18.88154 -18.03634 -16.68076 -16.26203 -16.05771 -15.92525 -15.45487 -15.14070 -14.69803 -14.62697 -14.33844 -14.13142 -13.74325 -13.71300 -13.26192 -13.08871 -12.85285 -12.69362 -12.48586 -12.25546 -12.16333 -12.09361 -11.91801 -11.85706 -11.61878 -11.39278 -11.28727 -11.02561 -10.91521 -10.77155 -10.66822 -10.24794 -10.13245 -9.85226 -9.64132 -9.47448 -9.29941 -9.13441 -8.51032 -8.44058 -8.12553 -6.01554 -3.98937 1.04374 1.16515 2.84776 3.32265 3.39492 3.43579 3.50155 4.08465 4.22629 4.27285 4.47605 4.53205 4.57026 4.61088 4.76641 4.86836 4.98035 5.07915 5.09204 5.26097 5.32349 5.34109 5.35592 5.45092 5.49820 5.57238 5.61494 5.69847 5.74386 5.76281 5.78065 5.86281 5.90631 5.97750 6.03612 6.05440 6.11175 6.11838 6.21327 6.23917 6.30142 6.35626 6.52961 6.57485 6.62803 6.95419 7.22174 7.29044 7.30843 7.40671 7.50680 7.83610 8.58034 9.04177 9.61394 11.12025 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.016269 B = 0.002590 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.611712 B =10807.708449 C =11866.764654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.526 5.526 3 C 0.054 3.946 4 C -0.096 4.096 5 C -0.013 4.013 6 C -0.517 4.517 7 H 0.071 0.929 8 C 0.065 3.935 9 N -0.905 5.905 10 Si 0.880 3.120 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.266 1.266 14 C 0.069 3.931 15 H 0.065 0.935 16 C -0.144 4.144 17 C 0.060 3.940 18 H 0.089 0.911 19 O -0.290 6.290 20 C 0.135 3.865 21 C -0.209 4.209 22 C -0.080 4.080 23 C -0.164 4.164 24 C -0.082 4.082 25 C -0.156 4.156 26 C -0.063 4.063 27 C -0.138 4.138 28 C -0.118 4.118 29 H 0.075 0.925 30 H 0.064 0.936 31 H 0.021 0.979 32 H 0.068 0.932 33 H 0.026 0.974 34 H 0.060 0.940 35 H 0.053 0.947 36 H 0.012 0.988 37 H 0.010 0.990 38 H 0.262 0.738 39 H 0.105 0.895 40 H 0.073 0.927 41 H 0.131 0.869 42 H 0.123 0.877 43 H 0.121 0.879 44 H 0.127 0.873 45 H 0.129 0.871 46 H 0.057 0.943 47 H 0.054 0.946 48 H 0.064 0.936 49 H 0.061 0.939 50 H 0.049 0.951 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.432 -24.455 17.324 30.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.250 5.250 3 C -0.074 4.074 4 C -0.134 4.134 5 C -0.051 4.051 6 C -0.555 4.555 7 H 0.090 0.910 8 C -0.136 4.136 9 N -0.544 5.544 10 Si 0.707 3.293 11 H -0.203 1.203 12 H -0.215 1.215 13 H -0.191 1.191 14 C -0.040 4.040 15 H 0.083 0.917 16 C -0.182 4.182 17 C 0.003 3.997 18 H 0.107 0.893 19 O -0.203 6.203 20 C 0.089 3.911 21 C -0.227 4.227 22 C -0.098 4.098 23 C -0.182 4.182 24 C -0.100 4.100 25 C -0.175 4.175 26 C -0.063 4.063 27 C -0.195 4.195 28 C -0.175 4.175 29 H 0.094 0.906 30 H 0.083 0.917 31 H 0.039 0.961 32 H 0.086 0.914 33 H 0.045 0.955 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.030 0.970 37 H 0.028 0.972 38 H 0.072 0.928 39 H 0.124 0.876 40 H 0.092 0.908 41 H 0.148 0.852 42 H 0.141 0.859 43 H 0.139 0.861 44 H 0.145 0.855 45 H 0.146 0.854 46 H 0.076 0.924 47 H 0.073 0.927 48 H 0.083 0.917 49 H 0.080 0.920 50 H 0.068 0.932 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.423 -24.412 16.882 30.008 hybrid contribution 0.445 1.108 1.211 1.700 sum 4.868 -23.304 18.092 29.902 Atomic orbital electron populations 1.22455 0.87851 1.01166 1.01295 1.62263 1.07621 1.14675 1.40407 1.22297 0.99589 0.86603 0.98871 1.21452 1.00493 0.96758 0.94658 1.19550 0.95646 0.92328 0.97603 1.21147 1.35423 0.97786 1.01133 0.91047 1.25043 0.95742 0.97561 0.95272 1.69918 1.47158 1.13248 1.24096 0.86774 0.80664 0.78898 0.82914 1.20321 1.21457 1.19104 1.23140 0.94990 0.92860 0.93030 0.91698 1.23541 0.96814 0.95498 1.02359 1.23535 0.99105 0.98515 0.78508 0.89344 1.86060 1.40538 1.72217 1.21515 1.19080 0.86892 0.92364 0.92716 1.21342 0.95543 1.05409 1.00433 1.20975 0.97092 0.96687 0.95067 1.21059 0.99620 1.03590 0.93914 1.20961 0.92830 0.96428 0.99805 1.20456 1.00574 1.04334 0.92102 1.22096 0.92652 0.95215 0.96374 1.21710 0.97566 1.00563 0.99648 1.21503 1.03578 0.99667 0.92766 0.90630 0.91686 0.96056 0.91372 0.95534 0.92080 0.92877 0.96963 0.97173 0.92811 0.87641 0.90841 0.85161 0.85861 0.86054 0.85520 0.85353 0.92375 0.92675 0.91687 0.92032 0.93165 0.90285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 8.59 60.06 0.52 0.78 16 2 N -0.53 -7.29 3.83 -233.91 -0.90 -8.18 16 3 C 0.05 0.88 4.89 -3.82 -0.02 0.87 16 4 C -0.10 -1.91 5.07 -26.73 -0.14 -2.05 16 5 C -0.01 -0.32 4.04 -27.88 -0.11 -0.44 16 6 C -0.52 -14.97 9.66 -34.44 -0.33 -15.30 16 7 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 8 C 0.06 1.91 5.47 -17.82 -0.10 1.82 16 9 N -0.90 -28.29 13.96 55.43 0.77 -27.51 16 10 Si 0.88 22.10 27.47 -169.99 -4.67 17.43 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 13 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 14 C 0.07 0.83 2.55 -66.90 -0.17 0.66 16 15 H 0.07 0.87 8.10 -51.93 -0.42 0.45 16 16 C -0.14 -1.63 6.46 -25.83 -0.17 -1.80 16 17 C 0.06 0.61 3.13 -25.83 -0.08 0.53 16 18 H 0.09 0.80 5.93 -51.93 -0.31 0.49 16 19 O -0.29 -3.25 8.60 -19.43 -0.17 -3.42 16 20 C 0.13 1.43 6.68 -39.22 -0.26 1.17 16 21 C -0.21 -1.99 9.02 -39.43 -0.36 -2.34 16 22 C -0.08 -0.67 10.04 -39.60 -0.40 -1.07 16 23 C -0.16 -1.28 10.04 -39.56 -0.40 -1.68 16 24 C -0.08 -0.66 10.04 -39.61 -0.40 -1.06 16 25 C -0.16 -1.48 9.99 -39.43 -0.39 -1.88 16 26 C -0.06 -0.64 0.76 -153.70 -0.12 -0.76 16 27 C -0.14 -1.33 8.98 37.16 0.33 -0.99 16 28 C -0.12 -1.15 8.51 37.16 0.32 -0.83 16 29 H 0.08 1.05 6.61 -51.93 -0.34 0.71 16 30 H 0.06 0.72 5.09 -51.93 -0.26 0.46 16 31 H 0.02 0.28 8.11 -51.93 -0.42 -0.14 16 32 H 0.07 1.11 7.35 -51.93 -0.38 0.73 16 33 H 0.03 0.45 8.10 -51.93 -0.42 0.03 16 34 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.05 1.06 6.62 -51.93 -0.34 0.72 16 36 H 0.01 0.30 7.20 -51.93 -0.37 -0.08 16 37 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 38 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 39 H 0.11 1.19 7.72 -51.93 -0.40 0.79 16 40 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.13 1.11 5.92 -52.49 -0.31 0.80 16 42 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 43 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 44 H 0.13 0.71 8.06 -52.48 -0.42 0.29 16 45 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 46 H 0.06 0.55 7.03 -51.92 -0.37 0.18 16 47 H 0.05 0.48 8.11 -51.93 -0.42 0.06 16 48 H 0.06 0.67 6.96 -51.93 -0.36 0.31 16 49 H 0.06 0.61 7.39 -51.93 -0.38 0.22 16 50 H 0.05 0.42 8.10 -51.93 -0.42 0.00 16 51 H 0.08 0.84 5.85 -51.93 -0.30 0.54 16 LS Contribution 391.10 15.07 5.89 5.89 Total: -1.00 -31.25 391.10 -10.10 -41.34 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -8.76 Total: -1.19 kcal Atomic # 6 Polarization: -22.09 SS G_CDS: -2.27 Total: -24.36 kcal Atomic # 7 Polarization: -35.58 SS G_CDS: -0.12 Total: -35.70 kcal Atomic # 8 Polarization: -3.25 SS G_CDS: -0.17 Total: -3.42 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.67 Total: 17.43 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.25 -10.10 -41.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554304884.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.771 kcal (2) G-P(sol) polarization free energy of solvation -31.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds