Wall clock time and date at job start Tue Mar 31 2020 11:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46902 * 110.99753 * 2 1 4 4 C 1.53002 * 109.47122 * 293.95399 * 3 2 1 5 5 C 1.52992 * 109.47174 * 180.02562 * 4 3 2 6 6 C 1.50702 * 109.47303 * 179.97438 * 5 4 3 7 7 H 1.08009 * 119.99951 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00494 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99587 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00275 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.46991 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47394 * 120.00131 * 10 8 6 13 13 H 1.48500 * 109.47047 * 239.99975 * 10 8 6 14 14 C 1.46894 * 111.00260 * 123.95112 * 2 1 3 15 15 H 1.09008 * 112.85342 * 284.41187 * 14 2 1 16 16 C 1.53787 * 113.61396 * 55.71196 * 14 2 1 17 17 C 1.53784 * 87.07743 * 89.11808 * 16 14 2 18 18 H 1.09002 * 113.61021 * 270.88353 * 17 16 14 19 19 O 1.42898 * 113.68958 * 139.99817 * 17 16 14 20 20 C 1.35895 * 117.00543 * 105.97229 * 19 17 16 21 21 C 1.38733 * 120.05782 * 174.13130 * 20 19 17 22 22 C 1.38149 * 119.94423 * 179.69848 * 21 20 19 23 23 C 1.38271 * 120.05169 * 0.59955 * 22 21 20 24 24 C 1.38260 * 120.11206 * 359.67497 * 23 22 21 25 25 C 1.38140 * 120.05851 * 0.02614 * 24 23 22 26 26 C 1.53775 * 113.61795 * 153.20975 * 14 2 1 27 27 C 1.53001 * 113.61347 * 25.43534 * 26 14 2 28 28 C 1.52999 * 113.61725 * 156.25404 * 26 14 2 29 29 H 1.08993 * 109.47265 * 54.94863 * 1 2 3 30 30 H 1.08995 * 109.46958 * 174.95625 * 1 2 3 31 31 H 1.09002 * 109.46984 * 294.95169 * 1 2 3 32 32 H 1.08997 * 109.46913 * 173.95796 * 3 2 1 33 33 H 1.08991 * 109.47280 * 53.95433 * 3 2 1 34 34 H 1.09005 * 109.47110 * 300.00411 * 4 3 2 35 35 H 1.08997 * 109.47200 * 59.99668 * 4 3 2 36 36 H 1.09005 * 109.47329 * 299.99504 * 5 4 3 37 37 H 1.09003 * 109.47647 * 59.99895 * 5 4 3 38 38 H 0.96999 * 119.99791 * 179.97438 * 9 8 6 39 39 H 1.08997 * 113.61805 * 203.66461 * 16 14 2 40 40 H 1.09000 * 113.61420 * 334.56993 * 16 14 2 41 41 H 1.07993 * 120.02797 * 359.97438 * 21 20 19 42 42 H 1.07994 * 119.97546 * 180.27747 * 22 21 20 43 43 H 1.07995 * 119.93979 * 179.70064 * 23 22 21 44 44 H 1.08006 * 119.97133 * 179.97438 * 24 23 22 45 45 H 1.08003 * 120.03054 * 179.97438 * 25 24 23 46 46 H 1.08997 * 109.47253 * 59.99769 * 27 26 14 47 47 H 1.09002 * 109.47665 * 180.02562 * 27 26 14 48 48 H 1.09012 * 109.46996 * 300.00098 * 27 26 14 49 49 H 1.09001 * 109.47295 * 60.00156 * 28 26 14 50 50 H 1.09006 * 109.46912 * 180.02562 * 28 26 14 51 51 H 1.09004 * 109.47274 * 299.99712 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0575 -1.3183 5 6 2.1802 3.4856 -1.3186 6 6 1.8222 4.1611 -2.6173 7 1 1.2591 3.6254 -3.3673 8 6 2.2125 5.4633 -2.8476 9 7 2.8968 6.1160 -1.9337 10 14 1.7681 6.3007 -4.4571 11 1 1.0009 5.3580 -5.3103 12 1 0.9409 7.5020 -4.1782 13 1 3.0098 6.7077 -5.1627 14 6 1.9955 -0.7659 1.1376 15 1 1.9139 -0.2296 2.0831 16 6 1.4752 -2.2117 1.2004 17 6 2.6735 -2.5979 0.3173 18 1 2.4681 -2.5304 -0.7511 19 8 3.2846 -3.8354 0.6878 20 6 3.0545 -4.9035 -0.1203 21 6 3.7122 -6.1032 0.1096 22 6 3.4719 -7.1893 -0.7096 23 6 2.5860 -7.0778 -1.7653 24 6 1.9335 -5.8816 -1.9999 25 6 2.1658 -4.7944 -1.1800 26 6 3.3905 -1.3621 0.8861 27 6 4.2068 -0.5938 -0.1553 28 6 4.1770 -1.6435 2.1679 29 1 -0.3633 0.5902 -0.8412 30 1 -0.3633 -1.0236 -0.0903 31 1 -0.3633 0.4335 0.9318 32 1 3.0797 1.3444 0.1082 33 1 1.5611 1.9273 0.8308 34 1 2.0657 1.5015 -2.1492 35 1 0.5472 2.0844 -1.4266 36 1 1.7461 4.0418 -0.4876 37 1 3.2645 3.4583 -1.2105 38 1 3.1717 7.0320 -2.0959 39 1 1.5114 -2.6458 2.1996 40 1 0.5105 -2.3502 0.7123 41 1 4.4082 -6.1892 0.9309 42 1 3.9802 -8.1247 -0.5284 43 1 2.4031 -7.9266 -2.4075 44 1 1.2423 -5.7969 -2.8255 45 1 1.6562 -3.8601 -1.3639 46 1 4.3478 0.4338 0.1796 47 1 5.1782 -1.0720 -0.2806 48 1 3.6755 -0.5961 -1.1072 49 1 3.6259 -2.3541 2.7838 50 1 5.1505 -2.0622 1.9123 51 1 4.3154 -0.7143 2.7207 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000554304885.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:38 Heat of formation + Delta-G solvation = 8.290280 kcal Electronic energy + Delta-G solvation = -26977.282088 eV Core-core repulsion = 23456.554956 eV Total energy + Delta-G solvation = -3520.727132 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.04590 -39.45132 -37.22603 -35.57627 -33.41671 -31.59391 -31.20058 -30.30519 -29.78465 -27.63643 -26.74792 -26.07047 -24.35287 -22.76216 -22.72229 -21.96621 -21.25859 -19.88749 -18.49749 -18.18773 -16.52701 -16.20549 -15.92462 -15.61975 -15.48585 -14.86541 -14.80546 -14.50349 -14.39471 -13.99233 -13.67065 -13.59694 -13.17374 -13.02245 -12.88913 -12.50038 -12.31324 -12.23188 -12.17048 -11.91126 -11.75491 -11.66122 -11.50460 -11.14755 -11.10430 -10.94120 -10.86882 -10.71990 -10.49702 -10.47666 -10.13314 -9.98735 -9.54145 -9.32914 -9.18777 -9.03151 -8.34101 -8.29962 -8.08913 -5.99326 -4.01170 1.15701 1.28494 3.14184 3.31219 3.38751 3.43001 3.61992 3.93255 4.32284 4.38797 4.47906 4.55339 4.67321 4.73196 4.84951 4.98185 5.16565 5.20196 5.20433 5.30942 5.36698 5.43319 5.44747 5.53382 5.56198 5.65220 5.70100 5.71538 5.77283 5.80996 5.85121 5.93317 5.99743 6.07628 6.12501 6.14080 6.17989 6.22244 6.30003 6.34981 6.42992 6.53266 6.63623 6.69729 6.81859 7.11454 7.33417 7.36177 7.39976 7.69340 7.84003 8.01314 8.44642 9.06273 9.62876 11.12143 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.017738 B = 0.002559 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.141479 B =10938.735701 C =11561.708641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.524 5.524 3 C 0.046 3.954 4 C -0.103 4.103 5 C 0.022 3.978 6 C -0.517 4.517 7 H 0.055 0.945 8 C 0.055 3.945 9 N -0.896 5.896 10 Si 0.891 3.109 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.284 1.284 14 C 0.066 3.934 15 H 0.059 0.941 16 C -0.152 4.152 17 C 0.073 3.927 18 H 0.108 0.892 19 O -0.301 6.301 20 C 0.136 3.864 21 C -0.159 4.159 22 C -0.083 4.083 23 C -0.166 4.166 24 C -0.079 4.079 25 C -0.209 4.209 26 C -0.062 4.062 27 C -0.137 4.137 28 C -0.122 4.122 29 H 0.078 0.922 30 H 0.062 0.938 31 H 0.022 0.978 32 H 0.082 0.918 33 H 0.027 0.973 34 H 0.054 0.946 35 H 0.046 0.954 36 H 0.013 0.987 37 H 0.015 0.985 38 H 0.259 0.741 39 H 0.092 0.908 40 H 0.078 0.922 41 H 0.127 0.873 42 H 0.125 0.875 43 H 0.120 0.880 44 H 0.123 0.877 45 H 0.131 0.869 46 H 0.067 0.933 47 H 0.049 0.951 48 H 0.072 0.928 49 H 0.058 0.942 50 H 0.062 0.938 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.476 -24.914 6.826 25.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.248 5.248 3 C -0.080 4.080 4 C -0.141 4.141 5 C -0.016 4.016 6 C -0.555 4.555 7 H 0.073 0.927 8 C -0.146 4.146 9 N -0.536 5.536 10 Si 0.719 3.281 11 H -0.197 1.197 12 H -0.211 1.211 13 H -0.210 1.210 14 C -0.043 4.043 15 H 0.077 0.923 16 C -0.189 4.189 17 C 0.017 3.983 18 H 0.126 0.874 19 O -0.214 6.214 20 C 0.091 3.909 21 C -0.178 4.178 22 C -0.102 4.102 23 C -0.184 4.184 24 C -0.098 4.098 25 C -0.228 4.228 26 C -0.063 4.063 27 C -0.194 4.194 28 C -0.180 4.180 29 H 0.096 0.904 30 H 0.080 0.920 31 H 0.041 0.959 32 H 0.100 0.900 33 H 0.045 0.955 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.031 0.969 37 H 0.034 0.966 38 H 0.069 0.931 39 H 0.110 0.890 40 H 0.097 0.903 41 H 0.145 0.855 42 H 0.143 0.857 43 H 0.138 0.862 44 H 0.141 0.859 45 H 0.149 0.851 46 H 0.086 0.914 47 H 0.068 0.932 48 H 0.091 0.909 49 H 0.078 0.922 50 H 0.081 0.919 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.133 -24.946 6.611 25.807 hybrid contribution -0.708 1.104 -0.277 1.340 sum -0.841 -23.842 6.333 24.683 Atomic orbital electron populations 1.22429 0.87737 1.01474 1.01066 1.61977 1.07483 1.15248 1.40098 1.22587 1.00667 0.85703 0.99091 1.21642 0.99983 0.98151 0.94343 1.19068 0.96211 0.89340 0.96938 1.21282 1.34607 0.97570 1.02042 0.92681 1.25030 0.95274 0.97538 0.96709 1.69977 1.38477 1.11230 1.33897 0.86557 0.78182 0.79476 0.83921 1.19741 1.21072 1.21021 1.22560 0.95325 0.93219 0.93230 0.92313 1.23642 0.98569 0.95658 1.01079 1.24319 0.93749 0.80456 0.99731 0.87438 1.86148 1.69845 1.17032 1.48421 1.19096 0.93740 0.88064 0.90049 1.20454 1.03068 0.91411 1.02831 1.20944 0.97147 0.97743 0.94317 1.21036 0.99736 0.98119 0.99517 1.20975 0.98166 0.92461 0.98156 1.21377 1.02650 1.00693 0.98038 1.22116 0.94549 0.92948 0.96706 1.21873 0.98780 0.99819 0.98936 1.21470 0.99893 1.01289 0.95317 0.90380 0.91968 0.95917 0.89989 0.95463 0.92688 0.93511 0.96905 0.96636 0.93113 0.89006 0.90309 0.85474 0.85679 0.86174 0.85920 0.85097 0.91385 0.93194 0.90922 0.92246 0.91929 0.92363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.12 60.07 0.55 0.82 16 2 N -0.52 -7.31 3.91 -233.91 -0.92 -8.23 16 3 C 0.05 0.77 4.49 -3.82 -0.02 0.76 16 4 C -0.10 -2.09 5.09 -26.73 -0.14 -2.23 16 5 C 0.02 0.56 4.97 -27.89 -0.14 0.43 16 6 C -0.52 -14.64 9.11 -34.44 -0.31 -14.96 16 7 H 0.05 1.53 7.74 -52.48 -0.41 1.12 16 8 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 9 N -0.90 -27.01 13.29 55.43 0.74 -26.27 16 10 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 11 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 13 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 14 C 0.07 0.80 2.87 -66.90 -0.19 0.61 16 15 H 0.06 0.74 8.09 -51.92 -0.42 0.32 16 16 C -0.15 -1.62 7.03 -25.91 -0.18 -1.80 16 17 C 0.07 0.84 3.01 -25.92 -0.08 0.76 16 18 H 0.11 1.30 5.77 -51.93 -0.30 1.00 16 19 O -0.30 -3.61 9.25 -19.41 -0.18 -3.79 16 20 C 0.14 1.57 6.68 -39.21 -0.26 1.31 16 21 C -0.16 -1.62 9.99 -39.43 -0.39 -2.01 16 22 C -0.08 -0.73 10.04 -39.60 -0.40 -1.13 16 23 C -0.17 -1.45 10.04 -39.56 -0.40 -1.85 16 24 C -0.08 -0.76 10.04 -39.61 -0.40 -1.15 16 25 C -0.21 -2.26 9.02 -39.43 -0.36 -2.62 16 26 C -0.06 -0.73 1.35 -153.70 -0.21 -0.94 16 27 C -0.14 -1.78 7.68 37.16 0.29 -1.50 16 28 C -0.12 -1.29 8.46 37.16 0.31 -0.98 16 29 H 0.08 1.09 6.26 -51.93 -0.32 0.76 16 30 H 0.06 0.68 6.20 -51.93 -0.32 0.36 16 31 H 0.02 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.08 1.38 4.71 -51.93 -0.24 1.13 16 33 H 0.03 0.47 8.12 -51.93 -0.42 0.05 16 34 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.05 0.94 6.45 -51.93 -0.34 0.60 16 36 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16 39 H 0.09 0.92 7.66 -51.93 -0.40 0.53 16 40 H 0.08 0.81 6.11 -51.93 -0.32 0.49 16 41 H 0.13 1.14 8.06 -52.49 -0.42 0.71 16 42 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 43 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 44 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 45 H 0.13 1.37 5.91 -52.48 -0.31 1.06 16 46 H 0.07 0.94 5.85 -51.93 -0.30 0.64 16 47 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 48 H 0.07 1.03 7.52 -51.92 -0.39 0.64 16 49 H 0.06 0.60 7.20 -51.93 -0.37 0.23 16 50 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 51 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 392.85 15.07 5.92 5.92 Total: -1.00 -30.20 392.85 -10.53 -40.73 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -8.65 Total: -0.08 kcal Atomic # 6 Polarization: -22.58 SS G_CDS: -2.42 Total: -25.00 kcal Atomic # 7 Polarization: -34.32 SS G_CDS: -0.18 Total: -34.50 kcal Atomic # 8 Polarization: -3.61 SS G_CDS: -0.18 Total: -3.79 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -30.20 -10.53 -40.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554304885.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.019 kcal (2) G-P(sol) polarization free energy of solvation -30.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds