Wall clock time and date at job start Tue Mar 31 2020 11:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46906 * 110.99849 * 2 1 4 4 C 1.52994 * 109.47152 * 66.04007 * 3 2 1 5 5 C 1.53001 * 109.46821 * 180.02562 * 4 3 2 6 6 C 1.50699 * 109.47375 * 180.02562 * 5 4 3 7 7 H 1.08006 * 119.99842 * 359.97438 * 6 5 4 8 8 C 1.37879 * 120.00564 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99596 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99985 * 180.02562 * 8 6 5 11 11 H 1.48491 * 109.47542 * 359.97438 * 10 8 6 12 12 H 1.48492 * 109.47216 * 120.00219 * 10 8 6 13 13 H 1.48503 * 109.46774 * 239.99665 * 10 8 6 14 14 C 1.46898 * 111.00353 * 236.04281 * 2 1 3 15 15 H 1.08999 * 112.84677 * 71.80875 * 14 2 1 16 16 C 1.53777 * 113.61347 * 300.61023 * 14 2 1 17 17 C 1.53776 * 87.08273 * 220.01954 * 16 14 2 18 18 H 1.08997 * 113.61552 * 270.88394 * 17 16 14 19 19 O 1.42902 * 113.61324 * 140.06498 * 17 16 14 20 20 C 1.35901 * 117.00137 * 86.76382 * 19 17 16 21 21 C 1.38730 * 120.05983 * 174.82391 * 20 19 17 22 22 C 1.38140 * 119.94833 * 179.70002 * 21 20 19 23 23 C 1.38273 * 120.04930 * 0.59292 * 22 21 20 24 24 C 1.38261 * 120.11657 * 359.68430 * 23 22 21 25 25 C 1.38151 * 120.05308 * 0.02562 * 24 23 22 26 26 C 1.53785 * 113.61380 * 203.00457 * 14 2 1 27 27 C 1.52992 * 113.61281 * 254.52957 * 26 14 2 28 28 C 1.53000 * 113.61082 * 25.43227 * 26 14 2 29 29 H 1.08994 * 109.46919 * 180.62848 * 1 2 3 30 30 H 1.09005 * 109.46518 * 60.63413 * 1 2 3 31 31 H 1.08991 * 109.47390 * 300.63429 * 1 2 3 32 32 H 1.08999 * 109.47145 * 186.04572 * 3 2 1 33 33 H 1.09010 * 109.46825 * 306.04160 * 3 2 1 34 34 H 1.08994 * 109.47705 * 299.99855 * 4 3 2 35 35 H 1.08994 * 109.47368 * 60.00514 * 4 3 2 36 36 H 1.09001 * 109.47141 * 299.99775 * 5 4 3 37 37 H 1.08997 * 109.47429 * 59.99851 * 5 4 3 38 38 H 0.96999 * 119.99616 * 179.97438 * 9 8 6 39 39 H 1.09002 * 113.61537 * 334.56826 * 16 14 2 40 40 H 1.09002 * 113.61436 * 105.38812 * 16 14 2 41 41 H 1.08000 * 120.02588 * 359.97438 * 21 20 19 42 42 H 1.07995 * 119.97599 * 180.27795 * 22 21 20 43 43 H 1.08000 * 119.94094 * 179.70268 * 23 22 21 44 44 H 1.08000 * 119.97492 * 180.02562 * 24 23 22 45 45 H 1.08000 * 120.02960 * 180.02562 * 25 24 23 46 46 H 1.09002 * 109.47601 * 60.00179 * 27 26 14 47 47 H 1.09003 * 109.46930 * 179.97438 * 27 26 14 48 48 H 1.08998 * 109.47191 * 299.99820 * 27 26 14 49 49 H 1.09001 * 109.47568 * 59.18167 * 28 26 14 50 50 H 1.09001 * 109.46646 * 179.18123 * 28 26 14 51 51 H 1.09002 * 109.47624 * 299.17717 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6313 2.0575 1.3181 5 6 2.1791 3.4861 1.3178 6 6 1.8210 4.1618 2.6164 7 1 1.2586 3.6259 3.3668 8 6 2.2114 5.4640 2.8467 9 7 2.8967 6.1163 1.9332 10 14 1.7681 6.3011 4.4567 11 1 1.0006 5.3586 5.3098 12 1 3.0102 6.7081 5.1613 13 1 0.9406 7.5024 4.1785 14 6 1.9955 -0.7660 -1.1375 15 1 1.8545 -0.2580 -2.0915 16 6 1.5465 -2.2367 -1.1504 17 6 2.9731 -2.5864 -1.6058 18 1 3.1006 -2.5765 -2.6882 19 8 3.4948 -3.7690 -0.9964 20 6 3.2104 -4.9520 -1.6018 21 6 3.7724 -6.1282 -1.1272 22 6 3.4769 -7.3303 -1.7404 23 6 2.6314 -7.3601 -2.8341 24 6 2.0744 -6.1886 -3.3126 25 6 2.3621 -4.9847 -2.6991 26 6 3.4272 -1.2843 -0.9213 27 6 4.4847 -0.5114 -1.7118 28 6 3.7980 -1.4636 0.5522 29 1 -0.3633 -1.0276 0.0113 30 1 -0.3632 0.5040 -0.8957 31 1 -0.3634 0.5236 0.8842 32 1 3.0797 1.3445 -0.1082 33 1 1.5611 1.9274 -0.8310 34 1 0.5471 2.0846 1.4264 35 1 2.0656 1.5018 2.1491 36 1 3.2634 3.4595 1.2095 37 1 1.7445 4.0417 0.4869 38 1 3.1709 7.0325 2.0950 39 1 1.2957 -2.6254 -0.1634 40 1 0.7829 -2.4536 -1.8973 41 1 4.4370 -6.1047 -0.2762 42 1 3.9106 -8.2467 -1.3686 43 1 2.4053 -8.3003 -3.3152 44 1 1.4140 -6.2146 -4.1667 45 1 1.9266 -4.0699 -3.0729 46 1 4.4693 0.5363 -1.4114 47 1 5.4695 -0.9325 -1.5094 48 1 4.2689 -0.5869 -2.7775 49 1 3.1102 -2.1703 1.0167 50 1 4.8163 -1.8454 0.6267 51 1 3.7319 -0.5030 1.0631 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000554304886.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:41 Heat of formation + Delta-G solvation = -1.215709 kcal Electronic energy + Delta-G solvation = -26766.455652 eV Core-core repulsion = 23245.316309 eV Total energy + Delta-G solvation = -3521.139343 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.05388 -39.42708 -37.26386 -35.64629 -33.39896 -31.48157 -31.25988 -30.32831 -29.93138 -27.32103 -26.97512 -26.10694 -24.24922 -22.88968 -22.61920 -22.11531 -21.07879 -19.84927 -18.45782 -18.36751 -16.52658 -16.27772 -16.07097 -15.60548 -15.36368 -15.12980 -14.62170 -14.50815 -14.29043 -14.05090 -13.71766 -13.61283 -13.32305 -13.01626 -12.94323 -12.43209 -12.30453 -12.15043 -12.03556 -11.79744 -11.76077 -11.72098 -11.50822 -11.23537 -11.16985 -10.90114 -10.85332 -10.78699 -10.65167 -10.46210 -10.17577 -10.04780 -9.57729 -9.30239 -9.25773 -9.01589 -8.38292 -8.32798 -8.07590 -5.98008 -3.99663 1.08472 1.21720 3.01421 3.32305 3.39763 3.44336 3.54993 4.15114 4.26256 4.31397 4.47694 4.50873 4.59918 4.64047 4.69631 4.87860 5.10161 5.13044 5.20245 5.28369 5.31728 5.37951 5.39782 5.48425 5.50454 5.62115 5.70555 5.74378 5.76599 5.83231 5.88930 5.98518 6.03938 6.07303 6.12310 6.13898 6.16065 6.23844 6.27526 6.30702 6.43772 6.55344 6.63086 6.72321 6.83497 7.14381 7.30853 7.37146 7.41386 7.71083 7.85865 8.02828 8.46407 9.07810 9.64256 11.13457 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.031080 B = 0.002208 C = 0.002188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.695432 B =12675.403510 C =12793.121150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.522 5.522 3 C 0.055 3.945 4 C -0.104 4.104 5 C 0.022 3.978 6 C -0.516 4.516 7 H 0.055 0.945 8 C 0.055 3.945 9 N -0.896 5.896 10 Si 0.891 3.109 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.285 1.285 14 C 0.064 3.936 15 H 0.065 0.935 16 C -0.149 4.149 17 C 0.064 3.936 18 H 0.092 0.908 19 O -0.293 6.293 20 C 0.136 3.864 21 C -0.157 4.157 22 C -0.082 4.082 23 C -0.165 4.165 24 C -0.082 4.082 25 C -0.208 4.208 26 C -0.051 4.051 27 C -0.143 4.143 28 C -0.107 4.107 29 H 0.060 0.940 30 H 0.020 0.980 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.027 0.973 34 H 0.046 0.954 35 H 0.055 0.945 36 H 0.015 0.985 37 H 0.012 0.988 38 H 0.259 0.741 39 H 0.102 0.898 40 H 0.068 0.932 41 H 0.129 0.871 42 H 0.126 0.874 43 H 0.120 0.880 44 H 0.122 0.878 45 H 0.127 0.873 46 H 0.068 0.932 47 H 0.060 0.940 48 H 0.052 0.948 49 H 0.059 0.941 50 H 0.049 0.951 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.181 -25.206 -11.881 27.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.246 5.246 3 C -0.072 4.072 4 C -0.142 4.142 5 C -0.016 4.016 6 C -0.554 4.554 7 H 0.073 0.927 8 C -0.146 4.146 9 N -0.536 5.536 10 Si 0.719 3.281 11 H -0.197 1.197 12 H -0.210 1.210 13 H -0.211 1.211 14 C -0.046 4.046 15 H 0.083 0.917 16 C -0.186 4.186 17 C 0.007 3.993 18 H 0.110 0.890 19 O -0.206 6.206 20 C 0.091 3.909 21 C -0.175 4.175 22 C -0.100 4.100 23 C -0.184 4.184 24 C -0.100 4.100 25 C -0.227 4.227 26 C -0.052 4.052 27 C -0.200 4.200 28 C -0.164 4.164 29 H 0.079 0.921 30 H 0.039 0.961 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.045 0.955 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.033 0.967 37 H 0.031 0.969 38 H 0.069 0.931 39 H 0.120 0.880 40 H 0.086 0.914 41 H 0.147 0.853 42 H 0.144 0.856 43 H 0.138 0.862 44 H 0.140 0.860 45 H 0.144 0.856 46 H 0.087 0.913 47 H 0.079 0.921 48 H 0.071 0.929 49 H 0.078 0.922 50 H 0.068 0.932 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.164 -25.212 -11.303 27.630 hybrid contribution -0.706 1.072 -0.250 1.307 sum -0.542 -24.140 -11.553 26.768 Atomic orbital electron populations 1.22367 0.87811 1.01152 1.01083 1.62209 1.07423 1.15050 1.39925 1.22334 0.99728 0.86058 0.99042 1.21641 1.00030 0.98118 0.94407 1.19071 0.96203 0.89377 0.96918 1.21289 1.34570 0.97545 1.02041 0.92654 1.25034 0.95287 0.97558 0.96723 1.69977 1.38476 1.11207 1.33946 0.86551 0.78162 0.79455 0.83933 1.19731 1.21030 1.21104 1.22897 0.95267 0.93062 0.93328 0.91704 1.23624 0.95956 0.95993 1.03063 1.24162 0.95023 0.83115 0.96961 0.89020 1.86182 1.71704 1.12164 1.50550 1.19100 0.93685 0.86363 0.91783 1.20486 1.03704 0.90279 1.03049 1.20961 0.96871 0.97037 0.95156 1.21033 1.00505 0.98242 0.98588 1.20955 0.98205 0.92048 0.98793 1.21325 1.03123 0.99394 0.98861 1.22078 0.94444 0.91025 0.97630 1.21855 0.98366 1.00904 0.98910 1.21261 1.00209 1.02814 0.92130 0.92126 0.96134 0.90565 0.91084 0.95518 0.93491 0.92607 0.96657 0.96934 0.93137 0.87984 0.91352 0.85278 0.85578 0.86164 0.86047 0.85566 0.91292 0.92086 0.92860 0.92175 0.93238 0.90964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.16 60.07 0.55 0.87 16 2 N -0.52 -7.47 3.69 -233.90 -0.86 -8.33 16 3 C 0.06 0.94 4.52 -3.82 -0.02 0.92 16 4 C -0.10 -2.14 5.08 -26.73 -0.14 -2.28 16 5 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 6 C -0.52 -14.73 9.11 -34.44 -0.31 -15.04 16 7 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 8 C 0.05 1.58 5.46 -17.82 -0.10 1.49 16 9 N -0.90 -27.11 13.29 55.43 0.74 -26.37 16 10 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 11 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 13 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 14 C 0.06 0.76 2.63 -66.90 -0.18 0.59 16 15 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 16 C -0.15 -1.57 5.68 -25.92 -0.15 -1.71 16 17 C 0.06 0.67 2.61 -25.83 -0.07 0.61 16 18 H 0.09 0.86 6.90 -51.93 -0.36 0.50 16 19 O -0.29 -3.45 9.27 -19.43 -0.18 -3.63 16 20 C 0.14 1.48 6.68 -39.22 -0.26 1.22 16 21 C -0.16 -1.54 9.99 -39.44 -0.39 -1.93 16 22 C -0.08 -0.67 10.04 -39.60 -0.40 -1.07 16 23 C -0.17 -1.31 10.04 -39.56 -0.40 -1.71 16 24 C -0.08 -0.68 10.04 -39.60 -0.40 -1.08 16 25 C -0.21 -1.99 8.94 -39.43 -0.35 -2.35 16 26 C -0.05 -0.60 0.97 -153.61 -0.15 -0.75 16 27 C -0.14 -1.58 9.17 37.15 0.34 -1.24 16 28 C -0.11 -1.39 7.85 37.16 0.29 -1.10 16 29 H 0.06 0.70 7.13 -51.93 -0.37 0.33 16 30 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.08 1.09 6.44 -51.93 -0.33 0.75 16 32 H 0.07 1.21 6.17 -51.93 -0.32 0.89 16 33 H 0.03 0.46 8.12 -51.92 -0.42 0.04 16 34 H 0.05 0.96 6.54 -51.93 -0.34 0.62 16 35 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 39 H 0.10 1.20 7.57 -51.93 -0.39 0.81 16 40 H 0.07 0.63 7.93 -51.93 -0.41 0.21 16 41 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 42 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 43 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 44 H 0.12 0.76 8.06 -52.49 -0.42 0.33 16 45 H 0.13 1.08 5.85 -52.49 -0.31 0.77 16 46 H 0.07 0.84 6.91 -51.93 -0.36 0.48 16 47 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 48 H 0.05 0.51 7.95 -51.93 -0.41 0.10 16 49 H 0.06 0.81 7.21 -51.93 -0.37 0.43 16 50 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 51 H 0.07 1.06 7.07 -51.93 -0.37 0.70 16 LS Contribution 397.08 15.07 5.98 5.98 Total: -1.00 -30.51 397.08 -10.56 -41.07 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -8.96 Total: -1.42 kcal Atomic # 6 Polarization: -21.88 SS G_CDS: -2.26 Total: -24.14 kcal Atomic # 7 Polarization: -34.57 SS G_CDS: -0.13 Total: -34.70 kcal Atomic # 8 Polarization: -3.45 SS G_CDS: -0.18 Total: -3.63 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -30.51 -10.56 -41.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554304886.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.858 kcal (2) G-P(sol) polarization free energy of solvation -30.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds