Wall clock time and date at job start Tue Mar 31 2020 11:47:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46906 * 110.99849 * 2 1 4 4 C 1.52994 * 109.47152 * 66.04007 * 3 2 1 5 5 C 1.53001 * 109.46821 * 180.02562 * 4 3 2 6 6 C 1.50699 * 109.47375 * 180.02562 * 5 4 3 7 7 H 1.08006 * 119.99842 * 359.97438 * 6 5 4 8 8 C 1.37879 * 120.00564 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99596 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99985 * 180.02562 * 8 6 5 11 11 H 1.48491 * 109.47542 * 359.97438 * 10 8 6 12 12 H 1.48492 * 109.47216 * 120.00219 * 10 8 6 13 13 H 1.48503 * 109.46774 * 239.99665 * 10 8 6 14 14 C 1.46898 * 111.00353 * 236.04281 * 2 1 3 15 15 H 1.08999 * 112.84677 * 71.80875 * 14 2 1 16 16 C 1.53777 * 113.61347 * 300.61023 * 14 2 1 17 17 C 1.53776 * 87.08273 * 220.01954 * 16 14 2 18 18 H 1.08997 * 113.61552 * 270.88394 * 17 16 14 19 19 O 1.42902 * 113.61324 * 140.06498 * 17 16 14 20 20 C 1.35901 * 117.00137 * 86.76382 * 19 17 16 21 21 C 1.38730 * 120.05983 * 174.82391 * 20 19 17 22 22 C 1.38140 * 119.94833 * 179.70002 * 21 20 19 23 23 C 1.38273 * 120.04930 * 0.59292 * 22 21 20 24 24 C 1.38261 * 120.11657 * 359.68430 * 23 22 21 25 25 C 1.38151 * 120.05308 * 0.02562 * 24 23 22 26 26 C 1.53785 * 113.61380 * 203.00457 * 14 2 1 27 27 C 1.52992 * 113.61281 * 254.52957 * 26 14 2 28 28 C 1.53000 * 113.61082 * 25.43227 * 26 14 2 29 29 H 1.08994 * 109.46919 * 180.62848 * 1 2 3 30 30 H 1.09005 * 109.46518 * 60.63413 * 1 2 3 31 31 H 1.08991 * 109.47390 * 300.63429 * 1 2 3 32 32 H 1.08999 * 109.47145 * 186.04572 * 3 2 1 33 33 H 1.09010 * 109.46825 * 306.04160 * 3 2 1 34 34 H 1.08994 * 109.47705 * 299.99855 * 4 3 2 35 35 H 1.08994 * 109.47368 * 60.00514 * 4 3 2 36 36 H 1.09001 * 109.47141 * 299.99775 * 5 4 3 37 37 H 1.08997 * 109.47429 * 59.99851 * 5 4 3 38 38 H 0.96999 * 119.99616 * 179.97438 * 9 8 6 39 39 H 1.09002 * 113.61537 * 334.56826 * 16 14 2 40 40 H 1.09002 * 113.61436 * 105.38812 * 16 14 2 41 41 H 1.08000 * 120.02588 * 359.97438 * 21 20 19 42 42 H 1.07995 * 119.97599 * 180.27795 * 22 21 20 43 43 H 1.08000 * 119.94094 * 179.70268 * 23 22 21 44 44 H 1.08000 * 119.97492 * 180.02562 * 24 23 22 45 45 H 1.08000 * 120.02960 * 180.02562 * 25 24 23 46 46 H 1.09002 * 109.47601 * 60.00179 * 27 26 14 47 47 H 1.09003 * 109.46930 * 179.97438 * 27 26 14 48 48 H 1.08998 * 109.47191 * 299.99820 * 27 26 14 49 49 H 1.09001 * 109.47568 * 59.18167 * 28 26 14 50 50 H 1.09001 * 109.46646 * 179.18123 * 28 26 14 51 51 H 1.09002 * 109.47624 * 299.17717 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6313 2.0575 1.3181 5 6 2.1791 3.4861 1.3178 6 6 1.8210 4.1618 2.6164 7 1 1.2586 3.6259 3.3668 8 6 2.2114 5.4640 2.8467 9 7 2.8967 6.1163 1.9332 10 14 1.7681 6.3011 4.4567 11 1 1.0006 5.3586 5.3098 12 1 3.0102 6.7081 5.1613 13 1 0.9406 7.5024 4.1785 14 6 1.9955 -0.7660 -1.1375 15 1 1.8545 -0.2580 -2.0915 16 6 1.5465 -2.2367 -1.1504 17 6 2.9731 -2.5864 -1.6058 18 1 3.1006 -2.5765 -2.6882 19 8 3.4948 -3.7690 -0.9964 20 6 3.2104 -4.9520 -1.6018 21 6 3.7724 -6.1282 -1.1272 22 6 3.4769 -7.3303 -1.7404 23 6 2.6314 -7.3601 -2.8341 24 6 2.0744 -6.1886 -3.3126 25 6 2.3621 -4.9847 -2.6991 26 6 3.4272 -1.2843 -0.9213 27 6 4.4847 -0.5114 -1.7118 28 6 3.7980 -1.4636 0.5522 29 1 -0.3633 -1.0276 0.0113 30 1 -0.3632 0.5040 -0.8957 31 1 -0.3634 0.5236 0.8842 32 1 3.0797 1.3445 -0.1082 33 1 1.5611 1.9274 -0.8310 34 1 0.5471 2.0846 1.4264 35 1 2.0656 1.5018 2.1491 36 1 3.2634 3.4595 1.2095 37 1 1.7445 4.0417 0.4869 38 1 3.1709 7.0325 2.0950 39 1 1.2957 -2.6254 -0.1634 40 1 0.7829 -2.4536 -1.8973 41 1 4.4370 -6.1047 -0.2762 42 1 3.9106 -8.2467 -1.3686 43 1 2.4053 -8.3003 -3.3152 44 1 1.4140 -6.2146 -4.1667 45 1 1.9266 -4.0699 -3.0729 46 1 4.4693 0.5363 -1.4114 47 1 5.4695 -0.9325 -1.5094 48 1 4.2689 -0.5869 -2.7775 49 1 3.1102 -2.1703 1.0167 50 1 4.8163 -1.8454 0.6267 51 1 3.7319 -0.5030 1.0631 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000554304886.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:40 Heat of formation + Delta-G solvation = -15.977291 kcal Electronic energy + Delta-G solvation = -26767.095762 eV Core-core repulsion = 23245.316309 eV Total energy + Delta-G solvation = -3521.779453 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.91974 -40.21779 -38.17764 -36.85854 -35.31756 -33.13519 -32.01267 -31.37209 -30.64218 -28.59213 -28.31788 -27.35027 -25.52213 -24.01143 -23.58084 -22.94470 -22.22229 -21.46238 -19.34369 -19.18205 -18.46492 -17.35128 -16.79845 -16.62938 -16.42794 -16.41012 -16.11408 -15.45133 -15.34611 -15.27201 -14.74848 -14.34041 -14.28729 -14.23952 -14.14615 -13.90219 -13.56336 -13.25721 -13.13138 -13.08655 -12.95071 -12.73920 -12.60955 -12.53470 -12.42181 -12.36613 -12.30288 -12.01442 -11.79558 -11.63797 -11.47832 -11.34072 -11.20790 -10.98911 -10.90683 -10.55324 -9.90046 -9.23965 -9.08706 -8.20270 -6.30774 0.44443 0.55092 1.39163 1.39577 1.53114 2.22621 2.40641 2.89506 3.06288 3.12756 3.36362 3.39777 3.61007 3.77330 3.98842 4.05464 4.15075 4.24764 4.26912 4.31492 4.35601 4.47168 4.54404 4.56386 4.58335 4.63861 4.67262 4.74287 4.79238 4.82706 4.86470 4.93274 5.00636 5.05001 5.06901 5.10773 5.13747 5.16666 5.20491 5.27927 5.40089 5.46996 5.50947 5.53591 5.59270 5.65225 5.75572 5.86926 5.94188 6.10715 6.23523 6.29862 6.56672 6.86149 7.38206 8.91736 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.031080 B = 0.002208 C = 0.002188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.695432 B =12675.403510 C =12793.121150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.527 5.527 3 C 0.071 3.929 4 C -0.088 4.088 5 C 0.027 3.973 6 C -0.540 4.540 7 H 0.058 0.942 8 C -0.002 4.002 9 N -0.933 5.933 10 Si 0.964 3.036 11 H -0.263 1.263 12 H -0.278 1.278 13 H -0.277 1.277 14 C 0.061 3.939 15 H 0.074 0.926 16 C -0.137 4.137 17 C 0.073 3.927 18 H 0.108 0.892 19 O -0.310 6.310 20 C 0.112 3.888 21 C -0.174 4.174 22 C -0.085 4.085 23 C -0.167 4.167 24 C -0.088 4.088 25 C -0.216 4.216 26 C -0.057 4.057 27 C -0.141 4.141 28 C -0.099 4.099 29 H 0.081 0.919 30 H 0.025 0.975 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.022 0.978 34 H 0.049 0.951 35 H 0.049 0.951 36 H -0.009 1.009 37 H -0.011 1.011 38 H 0.263 0.737 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.128 0.872 42 H 0.148 0.852 43 H 0.144 0.856 44 H 0.144 0.856 45 H 0.135 0.865 46 H 0.052 0.948 47 H 0.062 0.938 48 H 0.070 0.930 49 H 0.052 0.948 50 H 0.050 0.950 51 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.188 -27.058 -12.579 29.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.251 5.251 3 C -0.057 4.057 4 C -0.126 4.126 5 C -0.011 4.011 6 C -0.578 4.578 7 H 0.076 0.924 8 C -0.200 4.200 9 N -0.573 5.573 10 Si 0.789 3.211 11 H -0.187 1.187 12 H -0.203 1.203 13 H -0.203 1.203 14 C -0.048 4.048 15 H 0.091 0.909 16 C -0.175 4.175 17 C 0.017 3.983 18 H 0.126 0.874 19 O -0.224 6.224 20 C 0.067 3.933 21 C -0.193 4.193 22 C -0.103 4.103 23 C -0.185 4.185 24 C -0.106 4.106 25 C -0.235 4.235 26 C -0.058 4.058 27 C -0.198 4.198 28 C -0.157 4.157 29 H 0.100 0.900 30 H 0.043 0.957 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.041 0.959 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.009 0.991 37 H 0.008 0.992 38 H 0.072 0.928 39 H 0.108 0.892 40 H 0.107 0.893 41 H 0.146 0.854 42 H 0.166 0.834 43 H 0.162 0.838 44 H 0.161 0.839 45 H 0.153 0.847 46 H 0.071 0.929 47 H 0.081 0.919 48 H 0.089 0.911 49 H 0.071 0.929 50 H 0.069 0.931 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.850 -27.087 -12.006 29.641 hybrid contribution -0.368 1.564 -0.065 1.608 sum -1.218 -25.523 -12.071 28.260 Atomic orbital electron populations 1.22388 0.86952 1.02372 1.00633 1.62123 1.08240 1.13156 1.41607 1.22000 0.99557 0.87554 0.96587 1.21375 0.99694 0.95165 0.96369 1.18959 0.94596 0.92229 0.95268 1.21708 1.34776 0.98264 1.03027 0.92423 1.25986 0.95023 0.98347 1.00620 1.70102 1.39381 1.11716 1.36121 0.85405 0.78139 0.78342 0.79209 1.18687 1.20340 1.20301 1.22987 0.95541 0.93621 0.92647 0.90874 1.23526 0.96680 0.94240 1.03043 1.24081 0.94476 0.82279 0.97482 0.87409 1.86144 1.72230 1.12745 1.51284 1.19340 0.94980 0.86157 0.92810 1.20699 1.04201 0.90850 1.03557 1.21277 0.96685 0.97267 0.95064 1.21403 0.99670 0.99226 0.98213 1.21296 0.98266 0.91733 0.99257 1.21489 1.03004 1.00383 0.98600 1.22089 0.94547 0.92287 0.96869 1.21835 0.98398 0.99739 0.99864 1.21138 1.00196 1.01210 0.93126 0.90028 0.95653 0.91940 0.91509 0.95941 0.93200 0.93218 0.99098 0.99229 0.92804 0.89208 0.89279 0.85370 0.83379 0.83786 0.83852 0.84735 0.92910 0.91871 0.91105 0.92852 0.93069 0.93209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.62 9.16 127.69 1.17 1.79 16 2 N -0.53 -14.88 3.69 -893.94 -3.30 -18.18 16 3 C 0.07 2.45 4.52 86.30 0.39 2.84 16 4 C -0.09 -3.73 5.08 30.59 0.16 -3.57 16 5 C 0.03 1.46 4.97 29.85 0.15 1.61 16 6 C -0.54 -31.42 9.11 25.60 0.23 -31.18 16 7 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 8 C 0.00 -0.13 5.46 84.66 0.46 0.33 16 9 N -0.93 -57.49 13.29 21.45 0.28 -57.20 16 10 Si 0.96 45.04 29.54 68.60 2.03 47.06 16 11 H -0.26 -11.75 7.11 99.48 0.71 -11.05 16 12 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 13 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 14 C 0.06 1.39 2.63 45.44 0.12 1.51 16 15 H 0.07 1.60 8.10 -2.39 -0.02 1.59 16 16 C -0.14 -2.65 5.68 31.12 0.18 -2.47 16 17 C 0.07 1.44 2.61 31.18 0.08 1.52 16 18 H 0.11 1.78 6.90 -2.39 -0.02 1.76 16 19 O -0.31 -7.11 9.27 -92.43 -0.86 -7.97 16 20 C 0.11 2.33 6.68 22.51 0.15 2.48 16 21 C -0.17 -3.29 9.99 22.36 0.22 -3.06 16 22 C -0.09 -1.23 10.04 22.25 0.22 -1.01 16 23 C -0.17 -2.20 10.04 22.28 0.22 -1.98 16 24 C -0.09 -1.24 10.04 22.25 0.22 -1.01 16 25 C -0.22 -3.72 8.94 22.37 0.20 -3.52 16 26 C -0.06 -1.31 0.97 -51.60 -0.05 -1.36 16 27 C -0.14 -3.05 9.17 71.98 0.66 -2.39 16 28 C -0.10 -2.64 7.85 71.98 0.57 -2.07 16 29 H 0.08 1.73 7.13 -2.39 -0.02 1.71 16 30 H 0.02 0.62 8.14 -2.38 -0.02 0.60 16 31 H 0.06 1.75 6.44 -2.39 -0.02 1.74 16 32 H 0.07 2.36 6.17 -2.39 -0.01 2.35 16 33 H 0.02 0.79 8.12 -2.38 -0.02 0.77 16 34 H 0.05 2.06 6.54 -2.39 -0.02 2.05 16 35 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 36 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 37 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 38 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 39 H 0.09 2.00 7.57 -2.39 -0.02 1.99 16 40 H 0.09 1.37 7.93 -2.39 -0.02 1.35 16 41 H 0.13 2.29 8.06 -2.91 -0.02 2.26 16 42 H 0.15 1.37 8.06 -2.91 -0.02 1.35 16 43 H 0.14 1.16 8.06 -2.91 -0.02 1.14 16 44 H 0.14 1.32 8.06 -2.91 -0.02 1.29 16 45 H 0.13 1.97 5.85 -2.91 -0.02 1.95 16 46 H 0.05 1.30 6.91 -2.39 -0.02 1.29 16 47 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 48 H 0.07 1.26 7.95 -2.39 -0.02 1.24 16 49 H 0.05 1.46 7.21 -2.39 -0.02 1.44 16 50 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 51 H 0.05 1.52 7.07 -2.39 -0.02 1.51 16 Total: -1.00 -66.55 397.08 4.38 -62.16 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: 0.88 Total: 15.68 kcal Atomic # 6 Polarization: -46.91 SS G_CDS: 5.36 Total: -41.56 kcal Atomic # 7 Polarization: -72.37 SS G_CDS: -3.02 Total: -75.38 kcal Atomic # 8 Polarization: -7.11 SS G_CDS: -0.86 Total: -7.97 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.06 kcal Total: -66.55 4.38 -62.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554304886.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.186 kcal (2) G-P(sol) polarization free energy of solvation -66.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds