Wall clock time and date at job start Tue Mar 31 2020 12:15:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53005 * 109.47080 * 2 1 4 4 C 1.53000 * 109.47266 * 239.99645 * 2 1 3 5 5 C 1.50704 * 109.46912 * 119.99382 * 2 1 3 6 6 C 1.37973 * 120.07479 * 3.96966 * 5 2 1 7 7 C 1.38337 * 120.14618 * 179.97438 * 6 5 2 8 8 C 1.38383 * 120.29076 * 0.02562 * 7 6 5 9 9 C 1.37939 * 120.14388 * 359.74289 * 8 7 6 10 10 C 1.39559 * 120.07060 * 183.93740 * 5 2 1 11 11 C 1.47843 * 120.14467 * 0.02562 * 10 5 2 12 12 O 1.21552 * 120.00405 * 353.47455 * 11 10 5 13 13 N 1.34780 * 119.99954 * 173.47618 * 11 10 5 14 14 C 1.46503 * 119.99912 * 179.72360 * 13 11 10 15 15 C 1.53002 * 109.46919 * 180.27189 * 14 13 11 16 16 C 1.52997 * 109.47207 * 300.00248 * 15 14 13 17 17 C 1.53000 * 109.46983 * 59.99894 * 15 14 13 18 18 C 1.52997 * 109.46813 * 179.97438 * 15 14 13 19 19 C 1.50705 * 109.46981 * 180.02562 * 18 15 14 20 20 H 1.08000 * 120.00138 * 0.02562 * 19 18 15 21 21 C 1.37877 * 119.99971 * 179.97438 * 19 18 15 22 22 N 1.31515 * 119.99885 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99927 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47034 * 90.00203 * 23 21 19 25 25 H 1.48499 * 109.47179 * 210.00635 * 23 21 19 26 26 H 1.48502 * 109.47226 * 330.00037 * 23 21 19 27 27 H 1.09001 * 109.46929 * 300.00314 * 1 2 3 28 28 H 1.08997 * 109.46981 * 60.00157 * 1 2 3 29 29 H 1.09001 * 109.46771 * 180.02562 * 1 2 3 30 30 H 1.08991 * 109.47001 * 146.36334 * 3 2 1 31 31 H 1.09001 * 109.46916 * 266.36626 * 3 2 1 32 32 H 1.09001 * 109.46849 * 26.36082 * 3 2 1 33 33 H 1.08997 * 109.46991 * 331.31451 * 4 2 1 34 34 H 1.09006 * 109.46839 * 91.31231 * 4 2 1 35 35 H 1.08995 * 109.46788 * 211.31259 * 4 2 1 36 36 H 1.07998 * 119.92853 * 359.97438 * 6 5 2 37 37 H 1.08001 * 119.85611 * 180.02562 * 7 6 5 38 38 H 1.07999 * 119.92409 * 179.97438 * 8 7 6 39 39 H 1.08005 * 120.07149 * 180.27758 * 9 8 7 40 40 H 0.97004 * 119.99844 * 359.97438 * 13 11 10 41 41 H 1.08996 * 109.47231 * 300.27071 * 14 13 11 42 42 H 1.08995 * 109.47194 * 60.27546 * 14 13 11 43 43 H 1.08997 * 109.47242 * 59.99765 * 16 15 14 44 44 H 1.09005 * 109.46820 * 180.02562 * 16 15 14 45 45 H 1.09002 * 109.46507 * 299.99627 * 16 15 14 46 46 H 1.09008 * 109.47104 * 59.99759 * 17 15 14 47 47 H 1.08993 * 109.46994 * 179.97438 * 17 15 14 48 48 H 1.08997 * 109.47229 * 300.00090 * 17 15 14 49 49 H 1.09003 * 109.47137 * 299.99627 * 18 15 14 50 50 H 1.08995 * 109.47180 * 60.00430 * 18 15 14 51 51 H 0.96999 * 119.99322 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0324 -0.7103 1.2306 6 6 1.1398 -1.3062 2.0977 7 6 1.5993 -1.9591 3.2274 8 6 2.9555 -2.0187 3.4961 9 6 3.8587 -1.4312 2.6349 10 6 3.4014 -0.7673 1.4952 11 6 4.3635 -0.1311 0.5704 12 8 3.9757 0.3393 -0.4812 13 7 5.6708 -0.0726 0.8932 14 6 6.6251 0.5524 -0.0260 15 6 8.0313 0.4809 0.5725 16 6 8.0539 1.2204 1.9117 17 6 8.4184 -0.9830 0.7918 18 6 9.0280 1.1331 -0.3877 19 6 10.4133 1.0621 0.2015 20 1 10.5674 0.5978 1.1643 21 6 11.4840 1.5889 -0.4892 22 7 11.2964 2.1538 -1.6619 23 14 13.2010 1.5015 0.2415 24 1 13.8596 0.2430 -0.1914 25 1 13.9979 2.6638 -0.2266 26 1 13.1102 1.5283 1.7235 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 2.9678 1.4999 0.5692 31 1 2.2226 1.7634 -1.0256 32 1 1.2930 2.0920 0.4563 33 1 1.3113 -1.4700 -1.5594 34 1 2.1834 0.0011 -2.0528 35 1 2.9889 -1.2087 -1.0252 36 1 0.0801 -1.2629 1.8940 37 1 0.8965 -2.4243 3.9028 38 1 3.3077 -2.5296 4.3800 39 1 4.9172 -1.4823 2.8433 40 1 5.9803 -0.4477 1.7326 41 1 6.6090 0.0256 -0.9800 42 1 6.3493 1.5953 -0.1821 43 1 7.3439 0.7554 2.5956 44 1 9.0559 1.1698 2.3379 45 1 7.7782 2.2633 1.7554 46 1 8.4022 -1.5100 -0.1623 47 1 9.4203 -1.0340 1.2177 48 1 7.7083 -1.4481 1.4757 49 1 9.0118 0.6057 -1.3416 50 1 8.7524 2.1759 -0.5443 51 1 12.0497 2.5247 -2.1475 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000557922453.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:01 Heat of formation + Delta-G solvation = -14.175038 kcal Electronic energy + Delta-G solvation = -27619.794343 eV Core-core repulsion = 24098.093042 eV Total energy + Delta-G solvation = -3521.701301 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.98804 -38.63275 -37.24854 -36.22948 -33.56843 -32.22140 -31.26535 -30.19675 -27.39168 -27.10223 -27.07692 -26.53019 -26.30269 -23.84896 -22.96384 -22.52567 -20.25486 -19.36380 -18.51568 -17.50364 -16.36042 -16.04503 -15.60922 -15.47335 -15.00845 -14.74596 -14.47572 -14.44556 -14.20393 -13.87220 -13.77024 -13.20687 -13.04695 -12.71595 -12.62807 -12.30418 -12.26575 -12.10912 -12.06120 -11.73934 -11.63279 -11.33479 -11.04482 -10.90404 -10.86430 -10.75577 -10.69989 -10.63264 -10.51856 -10.40721 -10.25796 -9.87486 -9.45899 -9.14195 -9.12081 -8.93536 -8.89092 -8.53549 -8.36921 -6.01023 -4.02322 0.76822 1.18989 2.94564 3.30049 3.37047 3.38311 3.44009 3.77517 4.44211 4.48066 4.56933 4.68376 4.83861 4.96674 5.07840 5.18186 5.29427 5.30744 5.34563 5.48272 5.61078 5.61283 5.67610 5.72243 5.74342 5.77139 5.89455 5.95887 6.01333 6.06722 6.15138 6.21098 6.22115 6.22504 6.25543 6.36883 6.37931 6.39111 6.57800 6.58364 6.61185 6.67015 6.72019 6.78707 7.04594 7.05813 7.11513 7.62691 7.75089 7.75761 7.97678 8.38622 8.44025 9.02451 9.60897 11.10440 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.023046 B = 0.002904 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.683342 B = 9641.121085 C =10472.867067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.023 4.023 3 C -0.119 4.119 4 C -0.115 4.115 5 C -0.011 4.011 6 C -0.135 4.135 7 C -0.096 4.096 8 C -0.135 4.135 9 C -0.085 4.085 10 C -0.130 4.130 11 C 0.537 3.463 12 O -0.515 6.515 13 N -0.717 5.717 14 C 0.130 3.870 15 C -0.073 4.073 16 C -0.127 4.127 17 C -0.127 4.127 18 C 0.037 3.963 19 C -0.511 4.511 20 H 0.059 0.941 21 C 0.056 3.944 22 N -0.894 5.894 23 Si 0.888 3.112 24 H -0.282 1.282 25 H -0.287 1.287 26 H -0.275 1.275 27 H 0.054 0.946 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.030 0.970 33 H 0.031 0.969 34 H 0.060 0.940 35 H 0.066 0.934 36 H 0.131 0.869 37 H 0.124 0.876 38 H 0.126 0.874 39 H 0.125 0.875 40 H 0.396 0.604 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.028 0.972 44 H 0.067 0.933 45 H 0.047 0.953 46 H 0.048 0.952 47 H 0.067 0.933 48 H 0.027 0.973 49 H 0.018 0.982 50 H 0.018 0.982 51 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.951 -7.814 9.080 24.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.023 4.023 3 C -0.176 4.176 4 C -0.172 4.172 5 C -0.012 4.012 6 C -0.153 4.153 7 C -0.114 4.114 8 C -0.153 4.153 9 C -0.103 4.103 10 C -0.133 4.133 11 C 0.325 3.675 12 O -0.393 6.393 13 N -0.369 5.369 14 C 0.007 3.993 15 C -0.073 4.073 16 C -0.184 4.184 17 C -0.184 4.184 18 C -0.001 4.001 19 C -0.550 4.550 20 H 0.077 0.923 21 C -0.145 4.145 22 N -0.534 5.534 23 Si 0.717 3.283 24 H -0.208 1.208 25 H -0.213 1.213 26 H -0.199 1.199 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.049 0.951 33 H 0.050 0.950 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.149 0.851 37 H 0.142 0.858 38 H 0.144 0.856 39 H 0.143 0.857 40 H 0.232 0.768 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.047 0.953 44 H 0.086 0.914 45 H 0.067 0.933 46 H 0.067 0.933 47 H 0.086 0.914 48 H 0.046 0.954 49 H 0.036 0.964 50 H 0.037 0.963 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -21.096 -7.363 8.162 23.788 hybrid contribution 1.272 -0.248 0.835 1.541 sum -19.825 -7.610 8.997 23.062 Atomic orbital electron populations 1.22078 0.94836 1.01391 1.01793 1.19477 0.94246 0.96138 0.92420 1.22089 1.00043 0.92617 1.02810 1.21958 1.00251 0.99384 0.95594 1.20107 0.91522 0.94395 0.95201 1.21182 1.00064 0.99178 0.94832 1.21323 0.95715 0.97601 0.96787 1.21068 0.93284 1.01037 0.99959 1.21332 0.99867 0.95925 0.93224 1.19882 0.93771 1.02844 0.96849 1.18150 0.82330 0.80430 0.86608 1.90888 1.77486 1.46225 1.24731 1.46169 1.07023 1.60105 1.23606 1.21623 0.87943 0.97519 0.92180 1.20910 0.92952 0.96202 0.97277 1.21761 1.01374 0.99388 0.95900 1.21761 1.01091 0.95198 1.00361 1.19080 0.92191 0.95474 0.93311 1.21182 0.91931 1.37428 1.04420 0.92277 1.25011 0.99003 0.95514 0.94955 1.69966 1.31098 1.38995 1.13313 0.86654 0.84796 0.77529 0.79365 1.20775 1.21330 1.19947 0.92672 0.92232 0.92647 0.91567 0.91924 0.95082 0.94956 0.92085 0.91498 0.85117 0.85838 0.85624 0.85692 0.76825 0.91730 0.91728 0.95345 0.91418 0.93338 0.93335 0.91417 0.95380 0.96361 0.96345 0.93036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 6.77 37.16 0.25 -1.08 16 2 C -0.02 -0.27 0.75 -155.65 -0.12 -0.39 16 3 C -0.12 -1.57 7.54 37.16 0.28 -1.29 16 4 C -0.11 -1.49 7.57 37.16 0.28 -1.21 16 5 C -0.01 -0.13 4.73 -104.22 -0.49 -0.63 16 6 C -0.13 -1.30 8.98 -39.64 -0.36 -1.66 16 7 C -0.10 -0.82 10.04 -39.49 -0.40 -1.21 16 8 C -0.14 -1.20 10.03 -39.64 -0.40 -1.60 16 9 C -0.08 -0.89 9.52 -39.19 -0.37 -1.26 16 10 C -0.13 -1.64 5.31 -104.97 -0.56 -2.20 16 11 C 0.54 7.89 5.99 -12.33 -0.07 7.82 16 12 O -0.51 -8.51 8.78 5.32 0.05 -8.47 16 13 N -0.72 -10.31 4.91 -61.25 -0.30 -10.61 16 14 C 0.13 2.24 4.56 -4.04 -0.02 2.22 16 15 C -0.07 -1.36 0.54 -154.51 -0.08 -1.44 16 16 C -0.13 -2.20 8.05 37.16 0.30 -1.90 16 17 C -0.13 -2.19 8.05 37.16 0.30 -1.89 16 18 C 0.04 0.89 4.04 -27.88 -0.11 0.78 16 19 C -0.51 -13.46 7.65 -34.44 -0.26 -13.73 16 20 H 0.06 1.50 5.68 -52.49 -0.30 1.20 16 21 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 22 N -0.89 -26.30 13.29 55.43 0.74 -25.56 16 23 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 25 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 26 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 27 H 0.05 0.46 7.68 -51.93 -0.40 0.07 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.45 7.30 -51.93 -0.38 0.08 16 30 H 0.07 0.99 4.83 -51.93 -0.25 0.74 16 31 H 0.06 0.88 7.05 -51.93 -0.37 0.51 16 32 H 0.03 0.36 7.77 -51.93 -0.40 -0.04 16 33 H 0.03 0.36 7.80 -51.93 -0.40 -0.04 16 34 H 0.06 0.83 7.20 -51.93 -0.37 0.46 16 35 H 0.07 0.99 5.40 -51.93 -0.28 0.71 16 36 H 0.13 1.02 5.90 -52.49 -0.31 0.71 16 37 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 38 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 39 H 0.13 1.13 6.46 -52.48 -0.34 0.79 16 40 H 0.40 4.95 4.24 -40.82 -0.17 4.78 16 41 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 42 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 43 H 0.03 0.40 6.86 -51.93 -0.36 0.04 16 44 H 0.07 1.27 6.62 -51.93 -0.34 0.92 16 45 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.05 0.86 8.14 -51.92 -0.42 0.44 16 47 H 0.07 1.26 6.61 -51.93 -0.34 0.92 16 48 H 0.03 0.39 6.86 -51.93 -0.36 0.04 16 49 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 50 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 51 H 0.26 7.27 8.31 -40.82 -0.34 6.94 16 LS Contribution 379.09 15.07 5.71 5.71 Total: -1.00 -29.46 379.09 -9.07 -38.53 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -8.32 Total: 3.51 kcal Atomic # 6 Polarization: -17.27 SS G_CDS: -1.93 Total: -19.20 kcal Atomic # 7 Polarization: -36.61 SS G_CDS: 0.44 Total: -36.17 kcal Atomic # 8 Polarization: -8.51 SS G_CDS: 0.05 Total: -8.47 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -29.46 -9.07 -38.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000557922453.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.359 kcal (2) G-P(sol) polarization free energy of solvation -29.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds