Wall clock time and date at job start Tue Mar 31 2020 11:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38166 * 120.03147 * 2 1 4 4 C 1.38242 * 120.06044 * 179.97438 * 3 2 1 5 5 C 1.38287 * 120.10848 * 0.02562 * 4 3 2 6 6 C 1.38125 * 120.05670 * 359.68389 * 5 4 3 7 7 C 1.38711 * 120.02780 * 179.97438 * 2 1 3 8 8 O 1.35900 * 120.05562 * 0.02562 * 7 2 1 9 9 C 1.42898 * 117.00172 * 179.97438 * 8 7 2 10 10 C 1.53001 * 109.47145 * 179.97438 * 9 8 7 11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 8 12 12 N 1.46901 * 109.46769 * 180.02562 * 11 10 9 13 13 C 1.46839 * 111.00222 * 294.21135 * 12 11 10 14 14 C 1.53034 * 109.52552 * 174.16216 * 13 12 11 15 15 C 1.53123 * 109.28182 * 59.17780 * 14 13 12 16 16 C 1.52997 * 109.58011 * 182.41262 * 15 14 13 17 17 C 1.50703 * 109.46888 * 294.71564 * 16 15 14 18 18 H 1.08006 * 119.99741 * 0.02562 * 17 16 15 19 19 C 1.37874 * 120.00126 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99635 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00388 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.46769 * 60.00042 * 21 19 17 23 23 H 1.48488 * 109.47156 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47016 * 300.00245 * 21 19 17 25 25 C 1.53120 * 109.16070 * 302.35293 * 15 14 13 26 26 C 1.46849 * 110.99649 * 169.99929 * 12 11 10 27 27 H 1.09003 * 109.47176 * 270.02504 * 1 2 3 28 28 H 1.09005 * 109.46934 * 30.01650 * 1 2 3 29 29 H 1.08997 * 109.47370 * 150.02303 * 1 2 3 30 30 H 1.08005 * 119.97072 * 0.02562 * 3 2 1 31 31 H 1.07997 * 119.94747 * 179.97438 * 4 3 2 32 32 H 1.08007 * 119.97248 * 179.97438 * 5 4 3 33 33 H 1.07997 * 120.02908 * 180.31390 * 6 5 4 34 34 H 1.09001 * 109.46621 * 59.99888 * 9 8 7 35 35 H 1.09002 * 109.47259 * 300.00149 * 9 8 7 36 36 H 1.09001 * 109.46652 * 60.00333 * 10 9 8 37 37 H 1.08992 * 109.47514 * 300.00423 * 10 9 8 38 38 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 39 39 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 40 40 H 1.09006 * 109.46266 * 294.17473 * 13 12 11 41 41 H 1.09002 * 109.46276 * 54.14664 * 13 12 11 42 42 H 1.09006 * 109.50444 * 299.24199 * 14 13 12 43 43 H 1.09003 * 109.50687 * 179.12283 * 14 13 12 44 44 H 1.09005 * 109.51783 * 62.25186 * 15 14 13 45 45 H 1.08995 * 109.46884 * 54.71063 * 16 15 14 46 46 H 1.08998 * 109.47327 * 174.71809 * 16 15 14 47 47 H 0.97011 * 119.99713 * 179.97438 * 20 19 17 48 48 H 1.09005 * 109.50142 * 297.71204 * 25 15 14 49 49 H 1.08998 * 109.50777 * 177.59101 * 25 15 14 50 50 H 1.08991 * 109.46839 * 305.85721 * 26 12 11 51 51 H 1.09005 * 109.46224 * 65.84006 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1984 1.1962 0.0000 4 6 3.5809 1.1969 0.0005 5 6 4.2752 0.0009 0.0005 6 6 3.5886 -1.1976 0.0066 7 6 2.2011 -1.2009 0.0005 8 8 1.5233 -2.3789 0.0005 9 6 2.3033 -3.5762 0.0005 10 6 1.3730 -4.7909 0.0012 11 6 2.2082 -6.0728 0.0005 12 7 1.3150 -7.2391 0.0005 13 6 0.5491 -7.3154 1.2511 14 6 -0.4712 -8.4522 1.1574 15 6 0.2638 -9.7718 0.9059 16 6 -0.7536 -10.9039 0.7512 17 6 -1.4836 -11.1047 2.0542 18 1 -1.2459 -10.4863 2.9072 19 6 -2.4556 -12.0771 2.1572 20 7 -2.7454 -12.8297 1.1183 21 14 -3.3600 -12.3265 3.7725 22 1 -4.0654 -11.0735 4.1434 23 1 -4.3475 -13.4252 3.6224 24 1 -2.3855 -12.6794 4.8361 25 6 1.0919 -9.6493 -0.3762 26 6 2.0668 -8.4777 -0.2381 27 1 -0.3634 0.0004 1.0277 28 1 -0.3633 0.8899 -0.5141 29 1 -0.3634 -0.8902 -0.5135 30 1 1.6584 2.1315 0.0004 31 1 4.1195 2.1329 0.0001 32 1 5.3552 0.0040 0.0005 33 1 4.1313 -2.1313 0.0117 34 1 2.9321 -3.6001 0.8905 35 1 2.9322 -3.6002 -0.8894 36 1 0.7439 -4.7671 -0.8886 37 1 0.7444 -4.7667 0.8913 38 1 2.8365 -6.0968 -0.8899 39 1 2.8376 -6.0969 0.8901 40 1 1.2286 -7.5048 2.0821 41 1 0.0279 -6.3724 1.4159 42 1 -1.1595 -8.2566 0.3351 43 1 -1.0289 -8.5186 2.0916 44 1 0.9235 -9.9872 1.7464 45 1 -1.4687 -10.6455 -0.0298 46 1 -0.2354 -11.8236 0.4796 47 1 -3.4290 -13.5142 1.1908 48 1 0.4282 -9.4724 -1.2226 49 1 1.6510 -10.5709 -0.5378 50 1 2.6480 -8.3789 -1.1549 51 1 2.7390 -8.6618 0.6000 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000563620776.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:49 Heat of formation + Delta-G solvation = -56.042847 kcal Electronic energy + Delta-G solvation = -25691.663102 eV Core-core repulsion = 22168.146276 eV Total energy + Delta-G solvation = -3523.516826 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.18124 -40.14696 -38.50325 -36.57514 -34.71697 -33.76409 -32.85332 -31.68710 -30.84154 -29.59999 -27.68159 -26.79664 -25.20954 -24.20719 -23.19208 -22.59557 -22.20231 -21.50499 -20.44463 -18.96629 -18.42193 -17.29488 -17.25764 -16.70157 -16.52410 -16.32815 -15.98555 -15.50570 -15.24242 -15.07234 -14.86365 -14.71389 -14.48850 -14.17783 -14.00682 -13.93713 -13.72615 -13.26832 -13.15850 -13.08860 -12.94970 -12.74461 -12.62730 -12.50101 -12.39697 -12.22586 -12.12685 -12.07619 -11.98139 -11.69380 -11.61755 -11.53138 -11.22426 -10.84187 -10.69660 -10.51050 -9.75888 -9.22552 -9.05488 -8.16985 -6.26688 0.38706 0.50933 1.39143 1.41995 1.49671 2.15624 2.41694 2.82713 3.02790 3.15895 3.84936 3.85754 3.89238 4.01302 4.02777 4.09398 4.13374 4.19986 4.23298 4.33779 4.40054 4.42786 4.44762 4.52095 4.59133 4.63855 4.69009 4.70906 4.77699 4.79388 4.81509 4.85005 4.93747 4.99125 5.07399 5.13730 5.17630 5.23405 5.32405 5.38698 5.41776 5.43660 5.46035 5.54364 5.57940 5.62054 5.81380 5.89556 5.91687 6.16709 6.23539 6.30993 6.49183 6.89156 7.41442 8.94580 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.022872 B = 0.001919 C = 0.001820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.898765 B =14585.136162 C =15377.990677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.140 4.140 3 C -0.090 4.090 4 C -0.161 4.161 5 C -0.094 4.094 6 C -0.216 4.216 7 C 0.107 3.893 8 O -0.329 6.329 9 C 0.065 3.935 10 C -0.109 4.109 11 C 0.064 3.936 12 N -0.549 5.549 13 C 0.063 3.937 14 C -0.095 4.095 15 C -0.075 4.075 16 C 0.033 3.967 17 C -0.530 4.530 18 H 0.060 0.940 19 C -0.003 4.003 20 N -0.935 5.935 21 Si 0.961 3.039 22 H -0.267 1.267 23 H -0.285 1.285 24 H -0.268 1.268 25 C -0.108 4.108 26 C 0.068 3.932 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.057 0.943 30 H 0.147 0.853 31 H 0.146 0.854 32 H 0.145 0.855 33 H 0.139 0.861 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.092 0.908 39 H 0.043 0.957 40 H 0.032 0.968 41 H 0.082 0.918 42 H 0.047 0.953 43 H 0.055 0.945 44 H 0.048 0.952 45 H -0.013 1.013 46 H -0.014 1.014 47 H 0.262 0.738 48 H 0.054 0.946 49 H 0.062 0.938 50 H 0.092 0.908 51 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.706 28.396 -2.964 32.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.141 4.141 3 C -0.108 4.108 4 C -0.179 4.179 5 C -0.111 4.111 6 C -0.235 4.235 7 C 0.061 3.939 8 O -0.243 6.243 9 C -0.010 4.010 10 C -0.147 4.147 11 C -0.063 4.063 12 N -0.274 5.274 13 C -0.064 4.064 14 C -0.133 4.133 15 C -0.094 4.094 16 C -0.004 4.004 17 C -0.568 4.568 18 H 0.078 0.922 19 C -0.200 4.200 20 N -0.575 5.575 21 Si 0.786 3.214 22 H -0.192 1.192 23 H -0.210 1.210 24 H -0.193 1.193 25 C -0.146 4.146 26 C -0.060 4.060 27 H 0.087 0.913 28 H 0.099 0.901 29 H 0.076 0.924 30 H 0.165 0.835 31 H 0.164 0.836 32 H 0.163 0.837 33 H 0.157 0.843 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.110 0.890 39 H 0.061 0.939 40 H 0.050 0.950 41 H 0.101 0.899 42 H 0.066 0.934 43 H 0.073 0.927 44 H 0.066 0.934 45 H 0.005 0.995 46 H 0.005 0.995 47 H 0.070 0.930 48 H 0.072 0.928 49 H 0.081 0.919 50 H 0.110 0.890 51 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 15.060 28.259 -3.403 32.202 hybrid contribution -0.144 -1.069 1.269 1.666 sum 14.916 27.189 -2.134 31.085 Atomic orbital electron populations 1.20606 0.90129 1.02923 1.02417 1.19626 0.97293 0.90929 1.06268 1.21207 0.94720 0.97052 0.97850 1.21399 0.94251 0.99076 1.03161 1.21286 1.01038 0.91642 0.97183 1.21505 0.92652 1.00670 1.08662 1.19145 0.91217 0.85786 0.97704 1.86025 1.36826 1.12844 1.88640 1.22792 0.94077 0.81820 1.02331 1.21422 0.98391 0.91302 1.03583 1.21935 0.93821 0.88519 1.02061 1.61833 1.27091 1.03152 1.35291 1.22093 0.95654 0.98830 0.89849 1.21422 0.97326 0.93607 1.00936 1.21095 0.96338 0.95257 0.96720 1.19011 0.93269 0.92810 0.95303 1.21621 1.19665 1.17268 0.98277 0.92217 1.25970 0.98191 0.95782 1.00107 1.70105 1.33203 1.22331 1.31895 0.85563 0.78326 0.77907 0.79637 1.19234 1.21015 1.19254 1.21610 0.97827 0.97596 0.97571 1.22023 0.94356 0.88504 1.01096 0.91349 0.90126 0.92429 0.83480 0.83646 0.83703 0.84321 0.91163 0.90709 0.91011 0.91581 0.89005 0.93899 0.94983 0.89932 0.93431 0.92664 0.93396 0.99480 0.99536 0.92972 0.92752 0.91903 0.89016 0.94687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.71 9.79 71.23 0.70 -1.02 16 2 C -0.14 -2.61 5.89 -19.77 -0.12 -2.73 16 3 C -0.09 -1.31 9.70 22.25 0.22 -1.09 16 4 C -0.16 -2.06 10.04 22.28 0.22 -1.84 16 5 C -0.09 -1.27 10.04 22.25 0.22 -1.05 16 6 C -0.22 -3.58 9.04 22.37 0.20 -3.38 16 7 C 0.11 2.16 6.66 22.51 0.15 2.31 16 8 O -0.33 -7.12 9.18 -92.43 -0.85 -7.97 16 9 C 0.07 1.08 4.74 71.98 0.34 1.42 16 10 C -0.11 -2.08 5.51 30.59 0.17 -1.91 16 11 C 0.06 1.22 4.96 86.30 0.43 1.65 16 12 N -0.55 -14.46 4.66 -896.36 -4.17 -18.63 16 13 C 0.06 1.86 5.29 86.33 0.46 2.32 16 14 C -0.09 -3.63 5.15 30.65 0.16 -3.47 16 15 C -0.08 -3.15 2.20 -10.71 -0.02 -3.17 16 16 C 0.03 1.78 4.45 29.85 0.13 1.92 16 17 C -0.53 -30.44 8.45 25.60 0.22 -30.22 16 18 H 0.06 3.28 7.08 -2.91 -0.02 3.26 16 19 C 0.00 -0.19 5.46 84.65 0.46 0.27 16 20 N -0.93 -58.00 13.29 21.45 0.28 -57.72 16 21 Si 0.96 45.00 29.54 68.60 2.03 47.02 16 22 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 23 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 24 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 25 C -0.11 -3.73 5.38 30.65 0.16 -3.57 16 26 C 0.07 1.79 5.46 86.33 0.47 2.27 16 27 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.08 1.00 8.09 -2.38 -0.02 0.98 16 29 H 0.06 1.10 7.53 -2.39 -0.02 1.08 16 30 H 0.15 1.39 8.06 -2.91 -0.02 1.37 16 31 H 0.15 1.10 8.06 -2.91 -0.02 1.08 16 32 H 0.15 1.23 8.06 -2.91 -0.02 1.20 16 33 H 0.14 1.82 6.30 -2.91 -0.02 1.80 16 34 H 0.07 1.01 7.65 -2.39 -0.02 0.99 16 35 H 0.07 1.03 7.68 -2.39 -0.02 1.01 16 36 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.07 1.40 6.43 -2.39 -0.02 1.38 16 38 H 0.09 1.45 7.99 -2.39 -0.02 1.43 16 39 H 0.04 0.75 8.12 -2.39 -0.02 0.74 16 40 H 0.03 0.92 8.14 -2.38 -0.02 0.90 16 41 H 0.08 2.21 6.21 -2.39 -0.01 2.19 16 42 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 43 H 0.05 2.26 7.06 -2.39 -0.02 2.24 16 44 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 45 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 46 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 47 H 0.26 15.31 8.31 -92.70 -0.77 14.54 16 48 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 49 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 50 H 0.09 2.00 8.01 -2.39 -0.02 1.98 16 51 H 0.03 0.90 8.14 -2.38 -0.02 0.88 16 Total: -1.00 -68.33 398.25 2.73 -65.60 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: 0.87 Total: 12.99 kcal Atomic # 6 Polarization: -45.86 SS G_CDS: 4.57 Total: -41.29 kcal Atomic # 7 Polarization: -72.46 SS G_CDS: -3.89 Total: -76.35 kcal Atomic # 8 Polarization: -7.12 SS G_CDS: -0.85 Total: -7.97 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.02 kcal Total: -68.33 2.73 -65.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563620776.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.556 kcal (2) G-P(sol) polarization free energy of solvation -68.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds