Wall clock time and date at job start Tue Mar 31 2020 11:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38238 * 119.99959 * 2 1 4 4 C 1.38230 * 119.99717 * 180.02562 * 3 2 1 5 5 C 1.38238 * 120.00185 * 0.24966 * 4 3 2 6 6 C 1.50698 * 119.99843 * 179.72888 * 5 4 3 7 7 C 1.52998 * 109.47289 * 54.06540 * 6 5 4 8 8 C 1.53001 * 109.46935 * 174.06718 * 6 5 4 9 9 C 1.50703 * 109.47291 * 294.06426 * 6 5 4 10 10 O 1.21280 * 119.99978 * 4.43731 * 9 6 5 11 11 N 1.34777 * 119.99939 * 184.44295 * 9 6 5 12 12 C 1.46496 * 119.99674 * 179.97438 * 11 9 6 13 13 C 1.53000 * 109.47019 * 179.97438 * 12 11 9 14 14 C 1.53002 * 109.47251 * 299.99941 * 13 12 11 15 15 C 1.52999 * 109.47173 * 60.00244 * 13 12 11 16 16 C 1.53006 * 109.47002 * 180.02562 * 13 12 11 17 17 C 1.50705 * 109.46846 * 180.02562 * 16 13 12 18 18 H 1.07997 * 119.99964 * 0.02562 * 17 16 13 19 19 C 1.37872 * 119.99713 * 179.97438 * 17 16 13 20 20 N 1.31513 * 120.00237 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 119.99832 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47179 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.46883 * 120.00066 * 21 19 17 24 24 H 1.48498 * 109.47332 * 240.00146 * 21 19 17 25 25 C 1.38235 * 119.99737 * 359.49241 * 5 4 3 26 26 C 1.38230 * 119.99961 * 179.97438 * 2 1 3 27 27 H 1.09003 * 109.46979 * 90.00050 * 1 2 3 28 28 H 1.08989 * 109.47307 * 210.00413 * 1 2 3 29 29 H 1.09004 * 109.46975 * 330.00858 * 1 2 3 30 30 H 1.08003 * 119.99847 * 359.97230 * 3 2 1 31 31 H 1.08003 * 119.99893 * 179.97438 * 4 3 2 32 32 H 1.08991 * 109.47305 * 59.99920 * 7 6 5 33 33 H 1.09007 * 109.47022 * 179.97438 * 7 6 5 34 34 H 1.08999 * 109.46868 * 299.99857 * 7 6 5 35 35 H 1.08995 * 109.47176 * 59.99620 * 8 6 5 36 36 H 1.08999 * 109.47069 * 180.02562 * 8 6 5 37 37 H 1.09005 * 109.47006 * 299.99597 * 8 6 5 38 38 H 0.96996 * 120.00344 * 359.97438 * 11 9 6 39 39 H 1.08992 * 109.47744 * 299.99767 * 12 11 9 40 40 H 1.09001 * 109.47481 * 60.00107 * 12 11 9 41 41 H 1.08999 * 109.46785 * 59.99849 * 14 13 12 42 42 H 1.08997 * 109.47360 * 179.97438 * 14 13 12 43 43 H 1.09001 * 109.47249 * 300.00118 * 14 13 12 44 44 H 1.09001 * 109.47174 * 59.99809 * 15 13 12 45 45 H 1.08992 * 109.47200 * 179.97438 * 15 13 12 46 46 H 1.08999 * 109.46894 * 300.00170 * 15 13 12 47 47 H 1.08993 * 109.47262 * 300.00382 * 16 13 12 48 48 H 1.08995 * 109.46864 * 60.00489 * 16 13 12 49 49 H 0.97004 * 120.00154 * 179.97438 * 20 19 17 50 50 H 1.08002 * 120.00004 * 180.25567 * 25 5 4 51 51 H 1.07997 * 120.00016 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1971 -0.0005 5 6 4.2717 0.0000 -0.0063 6 6 5.7787 0.0000 -0.0130 7 6 6.2939 0.8440 1.1545 8 6 6.2893 -1.4351 0.1306 9 6 6.2752 0.5822 -1.3113 10 8 5.4865 1.0337 -2.1144 11 7 7.5958 0.6012 -1.5800 12 6 8.0784 1.1667 -2.8423 13 6 9.6041 1.0661 -2.8959 14 6 10.2080 1.8438 -1.7248 15 6 10.0220 -0.4028 -2.8024 16 6 10.1082 1.6573 -4.2141 17 6 11.6110 1.5576 -4.2671 18 1 12.1523 1.1163 -3.4433 19 6 12.2947 2.0288 -5.3678 20 7 11.6354 2.5657 -6.3711 21 14 14.1575 1.9059 -5.4333 22 1 14.6555 1.2671 -4.1886 23 1 14.5586 1.0859 -6.6046 24 1 14.7393 3.2664 -5.5589 25 6 3.5805 -1.1972 -0.0009 26 6 2.1982 -1.1971 0.0005 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8898 0.5138 29 1 -0.3633 0.8901 0.5137 30 1 1.6582 2.1325 -0.0005 31 1 4.1206 2.1324 -0.0010 32 1 5.9349 0.4229 2.0934 33 1 7.3840 0.8436 1.1498 34 1 5.9301 1.8663 1.0521 35 1 5.9222 -2.0363 -0.7011 36 1 7.3793 -1.4350 0.1262 37 1 5.9302 -1.8562 1.0697 38 1 8.2267 0.2404 -0.9376 39 1 7.6480 0.6130 -3.6766 40 1 7.7811 2.2133 -2.9088 41 1 9.8489 1.4230 -0.7856 42 1 11.2950 1.7717 -1.7627 43 1 9.9103 2.8902 -1.7915 44 1 9.5918 -0.9568 -3.6367 45 1 11.1089 -0.4745 -2.8410 46 1 9.6629 -0.8235 -1.8632 47 1 9.6780 1.1037 -5.0486 48 1 9.8106 2.7037 -4.2802 49 1 12.1165 2.8976 -7.1454 50 1 4.1205 -2.1325 -0.0012 51 1 1.6582 -2.1324 0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000563991238.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:50 Heat of formation + Delta-G solvation = -45.193445 kcal Electronic energy + Delta-G solvation = -26980.361447 eV Core-core repulsion = 23457.315087 eV Total energy + Delta-G solvation = -3523.046360 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.65337 -38.96705 -37.16208 -35.56037 -33.62045 -32.21750 -31.50172 -31.13922 -27.63818 -27.17404 -26.79204 -26.52536 -26.23891 -23.72826 -22.63992 -22.39326 -21.07106 -19.47448 -18.25137 -16.95781 -16.45907 -16.28525 -15.54139 -15.42573 -14.96437 -14.71015 -14.48906 -14.10123 -13.86436 -13.78195 -13.70769 -13.52518 -13.14507 -12.87662 -12.75837 -12.44841 -12.42956 -12.26404 -12.09416 -12.06879 -11.97214 -11.77406 -11.59262 -11.16004 -11.03689 -10.97168 -10.84441 -10.77369 -10.65662 -10.41045 -10.24927 -9.88861 -9.61781 -9.15940 -8.92999 -8.91443 -8.68864 -8.54418 -8.37141 -6.00808 -4.02135 1.25882 1.39644 2.84746 3.29293 3.36448 3.38086 3.40457 3.81178 4.33951 4.44319 4.58202 4.74322 4.79012 4.86638 4.93081 4.99201 5.23369 5.33963 5.34729 5.35164 5.40086 5.47659 5.50824 5.55286 5.60536 5.62180 5.63393 5.66030 5.74674 5.86511 5.95009 6.01536 6.02534 6.15796 6.21785 6.29320 6.37997 6.38633 6.52881 6.57301 6.58233 6.61648 6.77256 6.96260 7.05258 7.06232 7.12086 7.63485 7.75573 7.77624 7.98001 8.39207 8.47102 9.02927 9.61076 11.10641 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.029475 B = 0.002452 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.718214 B =11418.533830 C =11753.077660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.091 4.091 3 C -0.122 4.122 4 C -0.083 4.083 5 C -0.061 4.061 6 C -0.044 4.044 7 C -0.137 4.137 8 C -0.144 4.144 9 C 0.517 3.483 10 O -0.535 6.535 11 N -0.719 5.719 12 C 0.129 3.871 13 C -0.072 4.072 14 C -0.127 4.127 15 C -0.127 4.127 16 C 0.035 3.965 17 C -0.510 4.510 18 H 0.060 0.940 19 C 0.055 3.945 20 N -0.894 5.894 21 Si 0.889 3.111 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.285 1.285 25 C -0.112 4.112 26 C -0.124 4.124 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.119 0.881 31 H 0.119 0.881 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.397 0.603 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.028 0.972 42 H 0.067 0.933 43 H 0.047 0.953 44 H 0.047 0.953 45 H 0.067 0.933 46 H 0.028 0.972 47 H 0.018 0.982 48 H 0.018 0.982 49 H 0.259 0.741 50 H 0.125 0.875 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.496 -7.367 17.748 25.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.091 4.091 3 C -0.140 4.140 4 C -0.101 4.101 5 C -0.062 4.062 6 C -0.047 4.047 7 C -0.195 4.195 8 C -0.201 4.201 9 C 0.301 3.699 10 O -0.412 6.412 11 N -0.371 5.371 12 C 0.006 3.994 13 C -0.072 4.072 14 C -0.184 4.184 15 C -0.184 4.184 16 C -0.002 4.002 17 C -0.548 4.548 18 H 0.078 0.922 19 C -0.146 4.146 20 N -0.534 5.534 21 Si 0.717 3.283 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.211 1.211 25 C -0.130 4.130 26 C -0.142 4.142 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.137 0.863 31 H 0.137 0.863 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.233 0.767 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.047 0.953 42 H 0.086 0.914 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.086 0.914 46 H 0.047 0.953 47 H 0.036 0.964 48 H 0.036 0.964 49 H 0.069 0.931 50 H 0.143 0.857 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -17.025 -6.951 16.976 25.027 hybrid contribution 1.411 -0.121 -0.044 1.417 sum -15.614 -7.072 16.933 24.094 Atomic orbital electron populations 1.20774 0.91473 1.02457 1.02246 1.19895 0.95880 0.93321 1.00022 1.20965 0.94071 0.97423 1.01530 1.20902 0.93935 0.97631 0.97607 1.19272 0.92944 0.93545 1.00429 1.19723 0.92894 0.97563 0.94505 1.21875 1.01360 0.99740 0.96516 1.21962 1.01472 0.93853 1.02834 1.20292 0.82626 0.79164 0.87774 1.90712 1.55062 1.46575 1.48815 1.46185 1.06756 1.62262 1.21873 1.21616 0.95224 0.98252 0.84335 1.20897 0.90743 0.95993 0.99601 1.21761 1.02070 0.99323 0.95259 1.21760 1.02502 0.95297 0.98868 1.19096 0.95977 0.95857 0.89269 1.21215 0.91689 1.39063 1.02857 0.92205 1.25024 0.98147 0.95538 0.95874 1.69977 1.35281 1.40745 1.07355 0.86592 0.86146 0.77652 0.77918 1.19807 1.21146 1.21140 1.21098 0.94131 0.97633 1.00174 1.20930 0.94032 0.97346 1.01941 0.91281 0.91757 0.91716 0.86295 0.86338 0.91278 0.91576 0.91782 0.91578 0.91621 0.91109 0.76744 0.91910 0.91907 0.95305 0.91422 0.93363 0.93370 0.91420 0.95294 0.96361 0.96355 0.93095 0.85727 0.86329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.85 10.01 36.01 0.36 -0.49 16 2 C -0.09 -0.95 5.88 -104.62 -0.62 -1.57 16 3 C -0.12 -1.38 9.70 -39.58 -0.38 -1.76 16 4 C -0.08 -1.04 8.15 -39.58 -0.32 -1.36 16 5 C -0.06 -0.75 4.33 -104.62 -0.45 -1.20 16 6 C -0.04 -0.49 0.72 -156.81 -0.11 -0.60 16 7 C -0.14 -1.27 8.17 37.16 0.30 -0.96 16 8 C -0.14 -1.29 7.01 37.16 0.26 -1.03 16 9 C 0.52 7.74 6.40 -10.98 -0.07 7.67 16 10 O -0.54 -10.24 15.33 5.56 0.09 -10.15 16 11 N -0.72 -10.34 4.78 -60.30 -0.29 -10.63 16 12 C 0.13 2.28 4.56 -4.04 -0.02 2.26 16 13 C -0.07 -1.35 0.54 -154.50 -0.08 -1.43 16 14 C -0.13 -2.19 8.05 37.16 0.30 -1.89 16 15 C -0.13 -2.20 8.05 37.16 0.30 -1.90 16 16 C 0.04 0.87 4.04 -27.88 -0.11 0.76 16 17 C -0.51 -13.46 7.65 -34.44 -0.26 -13.73 16 18 H 0.06 1.52 5.68 -52.49 -0.30 1.22 16 19 C 0.06 1.53 5.46 -17.82 -0.10 1.44 16 20 N -0.89 -26.40 13.29 55.43 0.74 -25.67 16 21 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 22 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 25 C -0.11 -1.24 8.99 -39.58 -0.36 -1.59 16 26 C -0.12 -1.29 9.70 -39.59 -0.38 -1.67 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.41 8.08 -51.94 -0.42 -0.01 16 29 H 0.06 0.43 8.09 -51.93 -0.42 0.01 16 30 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 31 H 0.12 1.48 7.23 -52.48 -0.38 1.10 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.55 7.88 -51.92 -0.41 0.14 16 34 H 0.06 0.62 7.08 -51.93 -0.37 0.26 16 35 H 0.07 0.63 7.25 -51.93 -0.38 0.26 16 36 H 0.06 0.53 7.33 -51.93 -0.38 0.15 16 37 H 0.07 0.51 7.78 -51.93 -0.40 0.10 16 38 H 0.40 4.82 5.05 -40.82 -0.21 4.61 16 39 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.03 0.40 6.86 -51.93 -0.36 0.04 16 42 H 0.07 1.26 6.62 -51.93 -0.34 0.91 16 43 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 45 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 46 H 0.03 0.40 6.86 -51.93 -0.36 0.04 16 47 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 50 H 0.12 1.14 5.91 -52.49 -0.31 0.83 16 51 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 LS Contribution 395.52 15.07 5.96 5.96 Total: -1.00 -31.63 395.52 -9.01 -40.64 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -8.73 Total: 2.80 kcal Atomic # 6 Polarization: -17.31 SS G_CDS: -1.75 Total: -19.06 kcal Atomic # 7 Polarization: -36.75 SS G_CDS: 0.45 Total: -36.30 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.09 Total: -10.15 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.63 -9.01 -40.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563991238.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.552 kcal (2) G-P(sol) polarization free energy of solvation -31.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds