Wall clock time and date at job start Tue Mar 31 2020 11:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38238 * 119.99959 * 2 1 4 4 C 1.38230 * 119.99717 * 180.02562 * 3 2 1 5 5 C 1.38238 * 120.00185 * 0.24966 * 4 3 2 6 6 C 1.50698 * 119.99843 * 179.72888 * 5 4 3 7 7 C 1.52998 * 109.47289 * 54.06540 * 6 5 4 8 8 C 1.53001 * 109.46935 * 174.06718 * 6 5 4 9 9 C 1.50703 * 109.47291 * 294.06426 * 6 5 4 10 10 O 1.21280 * 119.99978 * 4.43731 * 9 6 5 11 11 N 1.34777 * 119.99939 * 184.44295 * 9 6 5 12 12 C 1.46496 * 119.99674 * 179.97438 * 11 9 6 13 13 C 1.53000 * 109.47019 * 179.97438 * 12 11 9 14 14 C 1.53002 * 109.47251 * 299.99941 * 13 12 11 15 15 C 1.52999 * 109.47173 * 60.00244 * 13 12 11 16 16 C 1.53006 * 109.47002 * 180.02562 * 13 12 11 17 17 C 1.50705 * 109.46846 * 180.02562 * 16 13 12 18 18 H 1.07997 * 119.99964 * 0.02562 * 17 16 13 19 19 C 1.37872 * 119.99713 * 179.97438 * 17 16 13 20 20 N 1.31513 * 120.00237 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 119.99832 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47179 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.46883 * 120.00066 * 21 19 17 24 24 H 1.48498 * 109.47332 * 240.00146 * 21 19 17 25 25 C 1.38235 * 119.99737 * 359.49241 * 5 4 3 26 26 C 1.38230 * 119.99961 * 179.97438 * 2 1 3 27 27 H 1.09003 * 109.46979 * 90.00050 * 1 2 3 28 28 H 1.08989 * 109.47307 * 210.00413 * 1 2 3 29 29 H 1.09004 * 109.46975 * 330.00858 * 1 2 3 30 30 H 1.08003 * 119.99847 * 359.97230 * 3 2 1 31 31 H 1.08003 * 119.99893 * 179.97438 * 4 3 2 32 32 H 1.08991 * 109.47305 * 59.99920 * 7 6 5 33 33 H 1.09007 * 109.47022 * 179.97438 * 7 6 5 34 34 H 1.08999 * 109.46868 * 299.99857 * 7 6 5 35 35 H 1.08995 * 109.47176 * 59.99620 * 8 6 5 36 36 H 1.08999 * 109.47069 * 180.02562 * 8 6 5 37 37 H 1.09005 * 109.47006 * 299.99597 * 8 6 5 38 38 H 0.96996 * 120.00344 * 359.97438 * 11 9 6 39 39 H 1.08992 * 109.47744 * 299.99767 * 12 11 9 40 40 H 1.09001 * 109.47481 * 60.00107 * 12 11 9 41 41 H 1.08999 * 109.46785 * 59.99849 * 14 13 12 42 42 H 1.08997 * 109.47360 * 179.97438 * 14 13 12 43 43 H 1.09001 * 109.47249 * 300.00118 * 14 13 12 44 44 H 1.09001 * 109.47174 * 59.99809 * 15 13 12 45 45 H 1.08992 * 109.47200 * 179.97438 * 15 13 12 46 46 H 1.08999 * 109.46894 * 300.00170 * 15 13 12 47 47 H 1.08993 * 109.47262 * 300.00382 * 16 13 12 48 48 H 1.08995 * 109.46864 * 60.00489 * 16 13 12 49 49 H 0.97004 * 120.00154 * 179.97438 * 20 19 17 50 50 H 1.08002 * 120.00004 * 180.25567 * 25 5 4 51 51 H 1.07997 * 120.00016 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1971 -0.0005 5 6 4.2717 0.0000 -0.0063 6 6 5.7787 0.0000 -0.0130 7 6 6.2939 0.8440 1.1545 8 6 6.2893 -1.4351 0.1306 9 6 6.2752 0.5822 -1.3113 10 8 5.4865 1.0337 -2.1144 11 7 7.5958 0.6012 -1.5800 12 6 8.0784 1.1667 -2.8423 13 6 9.6041 1.0661 -2.8959 14 6 10.2080 1.8438 -1.7248 15 6 10.0220 -0.4028 -2.8024 16 6 10.1082 1.6573 -4.2141 17 6 11.6110 1.5576 -4.2671 18 1 12.1523 1.1163 -3.4433 19 6 12.2947 2.0288 -5.3678 20 7 11.6354 2.5657 -6.3711 21 14 14.1575 1.9059 -5.4333 22 1 14.6555 1.2671 -4.1886 23 1 14.5586 1.0859 -6.6046 24 1 14.7393 3.2664 -5.5589 25 6 3.5805 -1.1972 -0.0009 26 6 2.1982 -1.1971 0.0005 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8898 0.5138 29 1 -0.3633 0.8901 0.5137 30 1 1.6582 2.1325 -0.0005 31 1 4.1206 2.1324 -0.0010 32 1 5.9349 0.4229 2.0934 33 1 7.3840 0.8436 1.1498 34 1 5.9301 1.8663 1.0521 35 1 5.9222 -2.0363 -0.7011 36 1 7.3793 -1.4350 0.1262 37 1 5.9302 -1.8562 1.0697 38 1 8.2267 0.2404 -0.9376 39 1 7.6480 0.6130 -3.6766 40 1 7.7811 2.2133 -2.9088 41 1 9.8489 1.4230 -0.7856 42 1 11.2950 1.7717 -1.7627 43 1 9.9103 2.8902 -1.7915 44 1 9.5918 -0.9568 -3.6367 45 1 11.1089 -0.4745 -2.8410 46 1 9.6629 -0.8235 -1.8632 47 1 9.6780 1.1037 -5.0486 48 1 9.8106 2.7037 -4.2802 49 1 12.1165 2.8976 -7.1454 50 1 4.1205 -2.1325 -0.0012 51 1 1.6582 -2.1324 0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000563991238.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:49 Heat of formation + Delta-G solvation = -61.914637 kcal Electronic energy + Delta-G solvation = -26981.086533 eV Core-core repulsion = 23457.315087 eV Total energy + Delta-G solvation = -3523.771446 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.69117 -40.01644 -38.63300 -36.51787 -35.23835 -33.93631 -32.39224 -31.94849 -29.11752 -28.33480 -27.95403 -27.80623 -27.37232 -25.24399 -23.99051 -23.22681 -22.09823 -20.64793 -19.67063 -18.39759 -17.97605 -17.49015 -16.68063 -16.49577 -16.36228 -16.03923 -15.66120 -15.29829 -15.06923 -14.74189 -14.62822 -14.52663 -14.36160 -14.27095 -13.94901 -13.94438 -13.46034 -13.29654 -13.05941 -12.94501 -12.89030 -12.71477 -12.69286 -12.59292 -12.52713 -12.34819 -12.34083 -12.23004 -11.95916 -11.73940 -11.57082 -11.53640 -11.10764 -10.87961 -10.61781 -10.52770 -10.05039 -9.76014 -9.36953 -8.14292 -6.22212 0.42427 0.55716 1.41749 1.42713 1.54545 1.66752 2.22160 2.44789 2.92045 3.20250 3.50069 3.75603 3.89445 3.99947 4.06946 4.07467 4.10288 4.14341 4.18381 4.22522 4.56498 4.57354 4.68786 4.70004 4.73873 4.75963 4.80398 4.83815 4.85982 4.89531 4.92128 4.96426 4.99897 5.10342 5.12711 5.20542 5.21554 5.27563 5.31542 5.40252 5.47474 5.50172 5.53835 5.56092 5.57970 5.73326 5.73958 5.80189 5.89786 6.16447 6.29855 6.60982 6.93400 7.28956 7.45695 8.98472 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.029475 B = 0.002452 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.718214 B =11418.533830 C =11753.077660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.098 4.098 3 C -0.137 4.137 4 C -0.104 4.104 5 C -0.080 4.080 6 C -0.035 4.035 7 C -0.136 4.136 8 C -0.144 4.144 9 C 0.514 3.486 10 O -0.583 6.583 11 N -0.705 5.705 12 C 0.143 3.857 13 C -0.063 4.063 14 C -0.122 4.122 15 C -0.122 4.122 16 C 0.039 3.961 17 C -0.510 4.510 18 H 0.075 0.925 19 C -0.008 4.008 20 N -0.940 5.940 21 Si 0.960 3.040 22 H -0.255 1.255 23 H -0.285 1.285 24 H -0.285 1.285 25 C -0.119 4.119 26 C -0.131 4.131 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.129 0.871 31 H 0.106 0.894 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.050 0.950 35 H 0.058 0.942 36 H 0.080 0.920 37 H 0.094 0.906 38 H 0.412 0.588 39 H 0.041 0.959 40 H 0.042 0.958 41 H 0.071 0.929 42 H 0.057 0.943 43 H 0.035 0.965 44 H 0.035 0.965 45 H 0.057 0.943 46 H 0.071 0.929 47 H -0.016 1.016 48 H -0.016 1.016 49 H 0.259 0.741 50 H 0.144 0.856 51 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.076 -9.556 20.747 27.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.098 4.098 3 C -0.155 4.155 4 C -0.123 4.123 5 C -0.080 4.080 6 C -0.038 4.038 7 C -0.193 4.193 8 C -0.201 4.201 9 C 0.301 3.699 10 O -0.462 6.462 11 N -0.358 5.358 12 C 0.018 3.982 13 C -0.064 4.064 14 C -0.179 4.179 15 C -0.179 4.179 16 C 0.001 3.999 17 C -0.548 4.548 18 H 0.093 0.907 19 C -0.205 4.205 20 N -0.581 5.581 21 Si 0.785 3.215 22 H -0.179 1.179 23 H -0.211 1.211 24 H -0.211 1.211 25 C -0.137 4.137 26 C -0.149 4.149 27 H 0.090 0.910 28 H 0.098 0.902 29 H 0.091 0.909 30 H 0.146 0.854 31 H 0.125 0.875 32 H 0.107 0.893 33 H 0.099 0.901 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.098 0.902 37 H 0.113 0.887 38 H 0.251 0.749 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.090 0.910 42 H 0.076 0.924 43 H 0.055 0.945 44 H 0.055 0.945 45 H 0.076 0.924 46 H 0.090 0.910 47 H 0.002 0.998 48 H 0.002 0.998 49 H 0.068 0.932 50 H 0.162 0.838 51 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -16.587 -9.162 20.024 27.569 hybrid contribution 1.165 0.585 -1.001 1.644 sum -15.422 -8.578 19.023 25.948 Atomic orbital electron populations 1.20817 0.89472 1.03722 1.02747 1.20274 0.97490 0.93024 0.99061 1.21203 0.93915 0.98562 1.01851 1.20996 0.94699 0.97656 0.98905 1.19478 0.93600 0.93820 1.01141 1.19725 0.92464 0.99148 0.92459 1.21910 1.02215 0.98809 0.96415 1.22022 1.02401 0.91827 1.03832 1.21102 0.82009 0.78049 0.88696 1.90694 1.56206 1.48548 1.50767 1.45948 1.07193 1.61911 1.20747 1.21177 0.94461 0.96989 0.85531 1.20694 0.91212 0.97257 0.97195 1.21700 1.01270 0.98698 0.96241 1.21699 1.01779 0.93703 1.00729 1.18985 0.95599 0.93727 0.91568 1.21618 0.92534 1.37823 1.02863 0.90747 1.25983 1.03324 0.95458 0.95691 1.70137 1.37354 1.42386 1.08222 0.85469 0.80011 0.77540 0.78454 1.17855 1.21133 1.21133 1.21398 0.94691 0.97956 0.99666 1.21303 0.94138 0.98328 1.01138 0.91029 0.90150 0.90874 0.85350 0.87544 0.89294 0.90102 0.93048 0.92309 0.90154 0.88691 0.74924 0.94015 0.93976 0.91020 0.92427 0.94534 0.94543 0.92428 0.90986 0.99769 0.99754 0.93220 0.83797 0.83971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.48 10.01 71.24 0.71 -0.76 16 2 C -0.10 -1.94 5.88 -19.86 -0.12 -2.05 16 3 C -0.14 -3.11 9.70 22.27 0.22 -2.89 16 4 C -0.10 -2.66 8.15 22.27 0.18 -2.48 16 5 C -0.08 -1.87 4.33 -19.87 -0.09 -1.96 16 6 C -0.03 -0.72 0.72 -53.67 -0.04 -0.76 16 7 C -0.14 -2.18 8.17 71.98 0.59 -1.60 16 8 C -0.14 -2.08 7.01 71.98 0.50 -1.58 16 9 C 0.51 15.15 6.40 87.66 0.56 15.71 16 10 O -0.58 -22.99 15.33 -3.03 -0.05 -23.04 16 11 N -0.71 -19.38 4.78 -463.07 -2.21 -21.59 16 12 C 0.14 5.17 4.56 86.38 0.39 5.56 16 13 C -0.06 -2.37 0.54 -52.18 -0.03 -2.40 16 14 C -0.12 -4.01 8.05 71.98 0.58 -3.43 16 15 C -0.12 -4.01 8.05 71.98 0.58 -3.43 16 16 C 0.04 1.98 4.04 29.85 0.12 2.10 16 17 C -0.51 -27.25 7.65 25.60 0.20 -27.05 16 18 H 0.07 3.70 5.68 -2.91 -0.02 3.68 16 19 C -0.01 -0.45 5.46 84.65 0.46 0.02 16 20 N -0.94 -57.46 13.29 21.45 0.28 -57.17 16 21 Si 0.96 43.53 29.54 68.60 2.03 45.56 16 22 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 23 H -0.29 -12.85 7.11 99.48 0.71 -12.15 16 24 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 25 C -0.12 -2.41 8.99 22.27 0.20 -2.21 16 26 C -0.13 -2.47 9.70 22.27 0.22 -2.25 16 27 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.08 0.81 8.08 -2.39 -0.02 0.79 16 29 H 0.07 0.84 8.09 -2.39 -0.02 0.82 16 30 H 0.13 2.47 8.06 -2.91 -0.02 2.45 16 31 H 0.11 2.83 7.23 -2.91 -0.02 2.81 16 32 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.08 1.04 7.88 -2.38 -0.02 1.02 16 34 H 0.05 0.96 7.08 -2.39 -0.02 0.94 16 35 H 0.06 0.96 7.25 -2.39 -0.02 0.94 16 36 H 0.08 0.93 7.33 -2.39 -0.02 0.91 16 37 H 0.09 0.95 7.78 -2.38 -0.02 0.94 16 38 H 0.41 8.61 5.05 -92.71 -0.47 8.14 16 39 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.07 1.73 6.86 -2.39 -0.02 1.72 16 42 H 0.06 2.02 6.62 -2.39 -0.02 2.01 16 43 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 45 H 0.06 2.02 6.62 -2.39 -0.02 2.01 16 46 H 0.07 1.74 6.86 -2.39 -0.02 1.72 16 47 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 48 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 49 H 0.26 15.01 8.31 -92.70 -0.77 14.23 16 50 H 0.14 2.23 5.91 -2.91 -0.02 2.21 16 51 H 0.14 1.91 8.06 -2.91 -0.02 1.88 16 Total: -1.00 -72.55 395.52 5.73 -66.83 By element: Atomic # 1 Polarization: 20.44 SS G_CDS: 0.43 Total: 20.87 kcal Atomic # 6 Polarization: -36.70 SS G_CDS: 5.24 Total: -31.45 kcal Atomic # 7 Polarization: -76.83 SS G_CDS: -1.93 Total: -78.76 kcal Atomic # 8 Polarization: -22.99 SS G_CDS: -0.05 Total: -23.04 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -72.55 5.73 -66.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563991238.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.910 kcal (2) G-P(sol) polarization free energy of solvation -72.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds