Wall clock time and date at job start Tue Mar 31 2020 11:22:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38242 * 119.99926 * 2 1 4 4 C 1.38226 * 119.99830 * 179.97438 * 3 2 1 5 5 C 1.38234 * 120.00137 * 359.96981 * 4 3 2 6 6 C 1.50705 * 120.00023 * 180.02562 * 5 4 3 7 7 C 1.53000 * 109.47006 * 90.00478 * 6 5 4 8 8 H 1.09006 * 109.53476 * 54.90406 * 7 6 5 9 9 C 1.53123 * 109.50348 * 294.80676 * 7 6 5 10 10 C 1.53124 * 109.15980 * 182.40196 * 9 7 6 11 11 C 1.53041 * 109.27510 * 57.65355 * 10 9 7 12 12 N 1.46842 * 109.52407 * 300.81747 * 11 10 9 13 13 C 1.46903 * 111.00077 * 185.84059 * 12 11 10 14 14 C 1.53006 * 109.46632 * 65.79321 * 13 12 11 15 15 O 1.42893 * 109.47138 * 65.00285 * 14 13 12 16 16 C 1.42905 * 113.99766 * 179.97438 * 15 14 13 17 17 C 1.50702 * 109.47210 * 179.97438 * 16 15 14 18 18 H 1.07996 * 119.99868 * 0.02562 * 17 16 15 19 19 C 1.37872 * 120.00093 * 179.97438 * 17 16 15 20 20 N 1.31513 * 120.00275 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00168 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46952 * 60.00059 * 21 19 17 23 23 H 1.48499 * 109.47619 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47223 * 300.00174 * 21 19 17 25 25 C 1.46846 * 111.19700 * 61.74724 * 12 11 10 26 26 C 1.38232 * 120.00251 * 0.28497 * 5 4 3 27 27 C 1.38235 * 120.00030 * 179.97438 * 2 1 3 28 28 H 1.09006 * 109.46509 * 90.00337 * 1 2 3 29 29 H 1.08998 * 109.47034 * 209.99576 * 1 2 3 30 30 H 1.08992 * 109.47405 * 330.00468 * 1 2 3 31 31 H 1.08000 * 119.99619 * 359.97306 * 3 2 1 32 32 H 1.07999 * 119.99831 * 180.02562 * 4 3 2 33 33 H 1.09007 * 109.46987 * 330.00961 * 6 5 4 34 34 H 1.08996 * 109.47391 * 210.00711 * 6 5 4 35 35 H 1.09000 * 109.52181 * 302.30675 * 9 7 6 36 36 H 1.08997 * 109.52376 * 62.49781 * 9 7 6 37 37 H 1.08997 * 109.50272 * 297.71554 * 10 9 7 38 38 H 1.08999 * 109.50255 * 177.59425 * 10 9 7 39 39 H 1.09006 * 109.45562 * 180.80294 * 11 10 9 40 40 H 1.08994 * 109.46280 * 60.84164 * 11 10 9 41 41 H 1.08996 * 109.47208 * 185.79079 * 13 12 11 42 42 H 1.08994 * 109.47072 * 305.79600 * 13 12 11 43 43 H 1.08998 * 109.46537 * 185.00145 * 14 13 12 44 44 H 1.09005 * 109.47234 * 304.99694 * 14 13 12 45 45 H 1.08997 * 109.46893 * 299.99886 * 16 15 14 46 46 H 1.08997 * 109.47266 * 59.99798 * 16 15 14 47 47 H 0.96994 * 120.00705 * 179.97438 * 20 19 17 48 48 H 1.08999 * 109.46089 * 178.24127 * 25 12 11 49 49 H 1.08994 * 109.45639 * 58.26845 * 25 12 11 50 50 H 1.07994 * 120.00312 * 179.72313 * 26 5 4 51 51 H 1.08001 * 120.00080 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 0.0001 0.0017 6 6 5.7787 0.0001 0.0029 7 6 6.2876 0.0007 1.4458 8 1 5.8518 -0.8396 1.9863 9 6 5.8865 1.3112 2.1287 10 6 6.4507 1.3293 3.5521 11 6 7.9712 1.1651 3.4949 12 7 8.3033 -0.1033 2.8337 13 6 9.7488 -0.3605 2.8839 14 6 10.1779 -0.5776 4.3364 15 8 9.5649 -1.7653 4.8418 16 6 9.9024 -2.0615 6.1984 17 6 9.2039 -3.3268 6.6251 18 1 8.5664 -3.8525 5.9297 19 6 9.3796 -3.8140 7.9029 20 7 10.1563 -3.1742 8.7496 21 14 8.5143 -5.3829 8.4315 22 1 8.9447 -6.5039 7.5578 23 1 8.8659 -5.6914 9.8409 24 1 7.0451 -5.2010 8.3158 25 6 7.8128 -0.1250 1.4498 26 6 3.5806 -1.1971 -0.0036 27 6 2.1982 -1.1971 0.0005 28 1 -0.3632 -0.0001 -1.0278 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5137 31 1 1.6582 2.1325 -0.0004 32 1 4.1205 2.1325 0.0010 33 1 6.1425 0.8899 -0.5110 34 1 6.1425 -0.8901 -0.5103 35 1 6.2897 2.1533 1.5663 36 1 4.7997 1.3843 2.1668 37 1 6.0175 0.5099 4.1257 38 1 6.2048 2.2781 4.0290 39 1 8.3745 1.1633 4.5077 40 1 8.4050 1.9922 2.9330 41 1 9.9799 -1.2512 2.2998 42 1 10.2844 0.4941 2.4707 43 1 11.2621 -0.6800 4.3834 44 1 9.8672 0.2763 4.9386 45 1 10.9808 -2.1949 6.2837 46 1 9.5863 -1.2386 6.8395 47 1 10.2796 -3.5167 9.6486 48 1 8.1011 -1.0638 0.9770 49 1 8.2473 0.7082 0.8975 50 1 4.1206 -2.1323 -0.0072 51 1 1.6582 -2.1325 0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567631106.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:53 Heat of formation + Delta-G solvation = -44.979054 kcal Electronic energy + Delta-G solvation = -26287.128152 eV Core-core repulsion = 22764.091088 eV Total energy + Delta-G solvation = -3523.037064 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.96990 -38.86650 -36.64178 -34.98871 -33.06991 -32.47119 -31.46997 -31.06821 -29.11560 -27.93234 -26.67545 -25.19512 -23.67699 -22.85368 -22.39140 -22.21270 -21.05801 -20.22717 -19.56590 -16.34370 -16.33279 -16.08202 -15.65665 -15.55294 -15.29726 -14.91016 -14.36869 -14.27236 -14.22865 -13.96243 -13.88728 -13.81956 -13.55292 -13.14740 -12.90976 -12.73903 -12.53841 -12.39839 -11.99172 -11.92458 -11.75486 -11.64269 -11.21411 -11.13347 -11.07855 -10.92697 -10.79532 -10.72343 -10.63210 -10.53075 -10.16310 -10.12707 -9.85255 -9.04596 -9.02567 -8.71947 -8.58552 -8.07336 -7.96655 -6.04269 -4.05007 1.18417 1.26547 3.36879 3.38886 3.43442 3.57342 4.06017 4.40966 4.55910 4.60607 4.72792 4.81503 4.85067 4.87744 5.00925 5.03648 5.07176 5.27350 5.31389 5.32055 5.35170 5.37554 5.44911 5.48906 5.54825 5.58100 5.58643 5.62258 5.68374 5.74130 5.80194 5.85357 5.92000 5.95404 6.01348 6.07648 6.12137 6.16057 6.25658 6.27853 6.35297 6.38095 6.43793 6.49488 6.56610 6.87858 7.18051 7.36134 7.37802 7.51424 7.87515 8.24452 8.70179 9.09828 9.59564 11.07444 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.012517 B = 0.002644 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2236.427697 B =10589.168330 C =12046.240237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.096 4.096 3 C -0.121 4.121 4 C -0.112 4.112 5 C -0.077 4.077 6 C -0.076 4.076 7 C -0.078 4.078 8 H 0.084 0.916 9 C -0.113 4.113 10 C -0.117 4.117 11 C 0.055 3.945 12 N -0.523 5.523 13 C 0.062 3.938 14 C 0.066 3.934 15 O -0.379 6.379 16 C 0.195 3.805 17 C -0.509 4.509 18 H 0.066 0.934 19 C 0.055 3.945 20 N -0.901 5.901 21 Si 0.907 3.093 22 H -0.275 1.275 23 H -0.287 1.287 24 H -0.275 1.275 25 C 0.064 3.936 26 C -0.112 4.112 27 C -0.118 4.118 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.118 0.882 32 H 0.119 0.881 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.054 0.946 36 H 0.065 0.935 37 H 0.075 0.925 38 H 0.062 0.938 39 H 0.079 0.921 40 H 0.024 0.976 41 H 0.080 0.920 42 H 0.036 0.964 43 H 0.038 0.962 44 H 0.036 0.964 45 H 0.001 0.999 46 H 0.002 0.998 47 H 0.263 0.737 48 H 0.073 0.927 49 H 0.026 0.974 50 H 0.122 0.878 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.333 11.531 -20.317 26.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.096 4.096 3 C -0.139 4.139 4 C -0.130 4.130 5 C -0.077 4.077 6 C -0.114 4.114 7 C -0.097 4.097 8 H 0.102 0.898 9 C -0.151 4.151 10 C -0.155 4.155 11 C -0.073 4.073 12 N -0.247 5.247 13 C -0.065 4.065 14 C -0.012 4.012 15 O -0.298 6.298 16 C 0.120 3.880 17 C -0.548 4.548 18 H 0.084 0.916 19 C -0.146 4.146 20 N -0.541 5.541 21 Si 0.734 3.266 22 H -0.201 1.201 23 H -0.212 1.212 24 H -0.200 1.200 25 C -0.064 4.064 26 C -0.130 4.130 27 C -0.136 4.136 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.136 0.864 32 H 0.137 0.863 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.093 0.907 38 H 0.081 0.919 39 H 0.097 0.903 40 H 0.042 0.958 41 H 0.098 0.902 42 H 0.054 0.946 43 H 0.056 0.944 44 H 0.054 0.946 45 H 0.019 0.981 46 H 0.020 0.980 47 H 0.073 0.927 48 H 0.092 0.908 49 H 0.044 0.956 50 H 0.140 0.860 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -13.610 11.024 -19.971 26.563 hybrid contribution 0.297 0.064 0.227 0.380 sum -13.313 11.088 -19.744 26.268 Atomic orbital electron populations 1.20779 0.91451 1.02720 1.02082 1.19898 0.95945 0.93306 1.00431 1.20991 0.94218 0.97375 1.01331 1.21020 0.94000 0.97598 1.00425 1.19847 0.95653 0.93073 0.99174 1.20646 0.90798 1.02737 0.97191 1.21154 0.94908 0.99196 0.94423 0.89806 1.21675 1.00662 0.96733 0.96022 1.21572 0.95128 1.01918 0.96866 1.22127 0.96200 0.89231 0.99741 1.61733 1.14276 1.33238 1.15476 1.22112 0.87109 1.00006 0.97288 1.22268 0.95554 0.90183 0.93201 1.87949 1.70677 1.40253 1.30944 1.20159 0.94920 0.95842 0.77068 1.21027 1.28351 1.07974 0.97408 0.91597 1.24944 0.95588 0.97911 0.96148 1.69953 1.38082 1.39849 1.06188 0.86411 0.79987 0.82855 0.77305 1.20062 1.21247 1.20009 1.22080 0.94588 1.00411 0.89308 1.21081 0.94103 0.97817 0.99980 1.21026 0.94249 0.97464 1.00909 0.91414 0.91603 0.91684 0.86391 0.86253 0.91246 0.90835 0.92771 0.91671 0.90665 0.91926 0.90268 0.95774 0.90182 0.94599 0.94436 0.94604 0.98084 0.98000 0.92718 0.90847 0.95601 0.85962 0.86247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.77 10.01 36.01 0.36 -0.41 16 2 C -0.10 -0.88 5.88 -104.62 -0.62 -1.50 16 3 C -0.12 -1.10 9.70 -39.58 -0.38 -1.49 16 4 C -0.11 -1.06 8.04 -39.59 -0.32 -1.38 16 5 C -0.08 -0.77 4.72 -104.62 -0.49 -1.27 16 6 C -0.08 -0.71 4.84 -27.88 -0.14 -0.85 16 7 C -0.08 -0.89 2.34 -90.54 -0.21 -1.10 16 8 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 9 C -0.11 -1.25 4.78 -26.60 -0.13 -1.37 16 10 C -0.12 -1.50 6.09 -26.65 -0.16 -1.66 16 11 C 0.05 0.77 5.30 -3.83 -0.02 0.75 16 12 N -0.52 -8.10 4.61 -234.67 -1.08 -9.18 16 13 C 0.06 0.97 5.35 -3.82 -0.02 0.95 16 14 C 0.07 1.27 6.00 37.16 0.22 1.49 16 15 O -0.38 -9.46 10.27 -35.23 -0.36 -9.82 16 16 C 0.19 5.50 5.69 36.01 0.20 5.70 16 17 C -0.51 -15.41 9.43 -34.44 -0.32 -15.73 16 18 H 0.07 1.99 7.81 -52.49 -0.41 1.58 16 19 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.90 -27.51 13.29 55.43 0.74 -26.78 16 21 Si 0.91 22.35 29.54 -169.99 -5.02 17.33 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 25 C 0.06 0.80 4.74 -3.83 -0.02 0.78 16 26 C -0.11 -1.14 9.70 -39.58 -0.38 -1.52 16 27 C -0.12 -1.14 9.70 -39.58 -0.38 -1.53 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.41 8.09 -51.93 -0.42 0.00 16 30 H 0.06 0.39 8.08 -51.93 -0.42 -0.03 16 31 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 32 H 0.12 0.96 8.04 -52.49 -0.42 0.54 16 33 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 34 H 0.07 0.65 8.08 -51.93 -0.42 0.23 16 35 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.71 6.45 -51.93 -0.33 0.38 16 37 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.08 1.24 6.12 -51.93 -0.32 0.92 16 40 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 41 H 0.08 1.24 7.99 -51.93 -0.41 0.83 16 42 H 0.04 0.47 8.12 -51.93 -0.42 0.05 16 43 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.04 0.67 6.22 -51.93 -0.32 0.35 16 45 H 0.00 0.04 8.14 -51.93 -0.42 -0.38 16 46 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 47 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 48 H 0.07 0.90 8.02 -51.93 -0.42 0.49 16 49 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 50 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 51 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 LS Contribution 401.80 15.07 6.06 6.06 Total: -1.00 -32.57 401.80 -11.95 -44.52 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -9.37 Total: -3.52 kcal Atomic # 6 Polarization: -15.70 SS G_CDS: -2.91 Total: -18.61 kcal Atomic # 7 Polarization: -35.61 SS G_CDS: -0.34 Total: -35.95 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: -0.36 Total: -9.82 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -32.57 -11.95 -44.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567631106.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.459 kcal (2) G-P(sol) polarization free energy of solvation -32.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds