Wall clock time and date at job start Tue Mar 31 2020 11:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38242 * 119.99926 * 2 1 4 4 C 1.38226 * 119.99830 * 179.97438 * 3 2 1 5 5 C 1.38234 * 120.00137 * 359.96981 * 4 3 2 6 6 C 1.50705 * 120.00023 * 180.02562 * 5 4 3 7 7 C 1.53000 * 109.47006 * 90.00478 * 6 5 4 8 8 H 1.09006 * 109.53476 * 54.90406 * 7 6 5 9 9 C 1.53123 * 109.50348 * 294.80676 * 7 6 5 10 10 C 1.53124 * 109.15980 * 182.40196 * 9 7 6 11 11 C 1.53041 * 109.27510 * 57.65355 * 10 9 7 12 12 N 1.46842 * 109.52407 * 300.81747 * 11 10 9 13 13 C 1.46903 * 111.00077 * 185.84059 * 12 11 10 14 14 C 1.53006 * 109.46632 * 65.79321 * 13 12 11 15 15 O 1.42893 * 109.47138 * 65.00285 * 14 13 12 16 16 C 1.42905 * 113.99766 * 179.97438 * 15 14 13 17 17 C 1.50702 * 109.47210 * 179.97438 * 16 15 14 18 18 H 1.07996 * 119.99868 * 0.02562 * 17 16 15 19 19 C 1.37872 * 120.00093 * 179.97438 * 17 16 15 20 20 N 1.31513 * 120.00275 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00168 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46952 * 60.00059 * 21 19 17 23 23 H 1.48499 * 109.47619 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47223 * 300.00174 * 21 19 17 25 25 C 1.46846 * 111.19700 * 61.74724 * 12 11 10 26 26 C 1.38232 * 120.00251 * 0.28497 * 5 4 3 27 27 C 1.38235 * 120.00030 * 179.97438 * 2 1 3 28 28 H 1.09006 * 109.46509 * 90.00337 * 1 2 3 29 29 H 1.08998 * 109.47034 * 209.99576 * 1 2 3 30 30 H 1.08992 * 109.47405 * 330.00468 * 1 2 3 31 31 H 1.08000 * 119.99619 * 359.97306 * 3 2 1 32 32 H 1.07999 * 119.99831 * 180.02562 * 4 3 2 33 33 H 1.09007 * 109.46987 * 330.00961 * 6 5 4 34 34 H 1.08996 * 109.47391 * 210.00711 * 6 5 4 35 35 H 1.09000 * 109.52181 * 302.30675 * 9 7 6 36 36 H 1.08997 * 109.52376 * 62.49781 * 9 7 6 37 37 H 1.08997 * 109.50272 * 297.71554 * 10 9 7 38 38 H 1.08999 * 109.50255 * 177.59425 * 10 9 7 39 39 H 1.09006 * 109.45562 * 180.80294 * 11 10 9 40 40 H 1.08994 * 109.46280 * 60.84164 * 11 10 9 41 41 H 1.08996 * 109.47208 * 185.79079 * 13 12 11 42 42 H 1.08994 * 109.47072 * 305.79600 * 13 12 11 43 43 H 1.08998 * 109.46537 * 185.00145 * 14 13 12 44 44 H 1.09005 * 109.47234 * 304.99694 * 14 13 12 45 45 H 1.08997 * 109.46893 * 299.99886 * 16 15 14 46 46 H 1.08997 * 109.47266 * 59.99798 * 16 15 14 47 47 H 0.96994 * 120.00705 * 179.97438 * 20 19 17 48 48 H 1.08999 * 109.46089 * 178.24127 * 25 12 11 49 49 H 1.08994 * 109.45639 * 58.26845 * 25 12 11 50 50 H 1.07994 * 120.00312 * 179.72313 * 26 5 4 51 51 H 1.08001 * 120.00080 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 0.0001 0.0017 6 6 5.7787 0.0001 0.0029 7 6 6.2876 0.0007 1.4458 8 1 5.8518 -0.8396 1.9863 9 6 5.8865 1.3112 2.1287 10 6 6.4507 1.3293 3.5521 11 6 7.9712 1.1651 3.4949 12 7 8.3033 -0.1033 2.8337 13 6 9.7488 -0.3605 2.8839 14 6 10.1779 -0.5776 4.3364 15 8 9.5649 -1.7653 4.8418 16 6 9.9024 -2.0615 6.1984 17 6 9.2039 -3.3268 6.6251 18 1 8.5664 -3.8525 5.9297 19 6 9.3796 -3.8140 7.9029 20 7 10.1563 -3.1742 8.7496 21 14 8.5143 -5.3829 8.4315 22 1 8.9447 -6.5039 7.5578 23 1 8.8659 -5.6914 9.8409 24 1 7.0451 -5.2010 8.3158 25 6 7.8128 -0.1250 1.4498 26 6 3.5806 -1.1971 -0.0036 27 6 2.1982 -1.1971 0.0005 28 1 -0.3632 -0.0001 -1.0278 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5137 31 1 1.6582 2.1325 -0.0004 32 1 4.1205 2.1325 0.0010 33 1 6.1425 0.8899 -0.5110 34 1 6.1425 -0.8901 -0.5103 35 1 6.2897 2.1533 1.5663 36 1 4.7997 1.3843 2.1668 37 1 6.0175 0.5099 4.1257 38 1 6.2048 2.2781 4.0290 39 1 8.3745 1.1633 4.5077 40 1 8.4050 1.9922 2.9330 41 1 9.9799 -1.2512 2.2998 42 1 10.2844 0.4941 2.4707 43 1 11.2621 -0.6800 4.3834 44 1 9.8672 0.2763 4.9386 45 1 10.9808 -2.1949 6.2837 46 1 9.5863 -1.2386 6.8395 47 1 10.2796 -3.5167 9.6486 48 1 8.1011 -1.0638 0.9770 49 1 8.2473 0.7082 0.8975 50 1 4.1206 -2.1323 -0.0072 51 1 1.6582 -2.1325 0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567631106.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:52 Heat of formation + Delta-G solvation = -62.622471 kcal Electronic energy + Delta-G solvation = -26287.893228 eV Core-core repulsion = 22764.091088 eV Total energy + Delta-G solvation = -3523.802140 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.78895 -39.84764 -38.38950 -36.04638 -34.89784 -33.84220 -32.34007 -31.76625 -30.58094 -29.02254 -28.47140 -26.03741 -24.81887 -24.40224 -23.64742 -23.35216 -22.04891 -21.19238 -20.53783 -18.60823 -17.47893 -17.34414 -17.01020 -16.48850 -16.36583 -16.06470 -15.96334 -15.61666 -15.40333 -15.04773 -14.92183 -14.74403 -14.53135 -14.24168 -14.04284 -13.73737 -13.61791 -13.47321 -13.17665 -13.11433 -12.97436 -12.75188 -12.64919 -12.58438 -12.40404 -12.23217 -12.06243 -11.92466 -11.84657 -11.72132 -11.54150 -11.29099 -11.15226 -11.04255 -10.83569 -10.16473 -9.75768 -9.28929 -9.09119 -8.31634 -6.43637 0.47792 0.55525 1.38682 1.43987 1.52282 2.34984 2.82084 2.99799 3.01677 3.26125 3.74612 3.86523 3.94452 4.02257 4.03441 4.12322 4.20866 4.23684 4.29981 4.35069 4.41694 4.44146 4.53607 4.58855 4.62844 4.66060 4.68078 4.72407 4.81423 4.83809 4.84793 4.87024 4.91205 4.94220 4.99150 5.02582 5.07563 5.13645 5.19334 5.22474 5.28371 5.36376 5.38608 5.53295 5.55624 5.58741 5.75953 5.81325 5.97910 6.19069 6.21542 6.30755 6.57687 6.87077 7.28528 8.80626 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.012517 B = 0.002644 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2236.427697 B =10589.168330 C =12046.240237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.105 4.105 3 C -0.130 4.130 4 C -0.117 4.117 5 C -0.090 4.090 6 C -0.067 4.067 7 C -0.072 4.072 8 H 0.052 0.948 9 C -0.104 4.104 10 C -0.116 4.116 11 C 0.056 3.944 12 N -0.554 5.554 13 C 0.071 3.929 14 C 0.056 3.944 15 O -0.395 6.395 16 C 0.210 3.790 17 C -0.546 4.546 18 H 0.059 0.941 19 C 0.006 3.994 20 N -0.931 5.931 21 Si 0.982 3.018 22 H -0.265 1.265 23 H -0.273 1.273 24 H -0.267 1.267 25 C 0.066 3.934 26 C -0.130 4.130 27 C -0.133 4.133 28 H 0.077 0.923 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.136 0.864 32 H 0.135 0.865 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.066 0.934 37 H 0.043 0.957 38 H 0.078 0.922 39 H 0.054 0.946 40 H 0.047 0.953 41 H 0.079 0.921 42 H 0.070 0.930 43 H 0.046 0.954 44 H 0.037 0.963 45 H -0.016 1.016 46 H -0.020 1.020 47 H 0.271 0.729 48 H 0.071 0.929 49 H 0.047 0.953 50 H 0.122 0.878 51 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.316 12.155 -21.632 28.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.105 4.105 3 C -0.148 4.148 4 C -0.135 4.135 5 C -0.090 4.090 6 C -0.104 4.104 7 C -0.091 4.091 8 H 0.070 0.930 9 C -0.142 4.142 10 C -0.154 4.154 11 C -0.071 4.071 12 N -0.280 5.280 13 C -0.056 4.056 14 C -0.022 4.022 15 O -0.314 6.314 16 C 0.135 3.865 17 C -0.583 4.583 18 H 0.077 0.923 19 C -0.193 4.193 20 N -0.571 5.571 21 Si 0.805 3.195 22 H -0.189 1.189 23 H -0.198 1.198 24 H -0.192 1.192 25 C -0.061 4.061 26 C -0.148 4.148 27 C -0.151 4.151 28 H 0.096 0.904 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.154 0.846 32 H 0.153 0.847 33 H 0.105 0.895 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.061 0.939 38 H 0.097 0.903 39 H 0.072 0.928 40 H 0.065 0.935 41 H 0.097 0.903 42 H 0.088 0.912 43 H 0.064 0.936 44 H 0.055 0.945 45 H 0.001 0.999 46 H -0.002 1.002 47 H 0.079 0.921 48 H 0.090 0.910 49 H 0.065 0.935 50 H 0.140 0.860 51 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -14.590 11.666 -21.308 28.337 hybrid contribution 0.616 -0.060 0.624 0.879 sum -13.974 11.606 -20.685 27.529 Atomic orbital electron populations 1.20814 0.89878 1.03309 1.02905 1.20240 0.97298 0.93212 0.99794 1.21296 0.94419 0.98155 1.00916 1.21248 0.94365 0.97933 0.99986 1.19964 0.95985 0.93298 0.99734 1.20562 0.90465 1.03713 0.95680 1.21056 0.94192 0.98287 0.95554 0.92952 1.21612 1.00695 0.97133 0.94746 1.21560 0.94322 1.01460 0.98041 1.22094 0.96900 0.89506 0.98627 1.61671 1.14211 1.34410 1.17664 1.22016 0.87937 1.01333 0.94326 1.22635 0.95953 0.88009 0.95554 1.87904 1.71516 1.42987 1.29004 1.19765 0.93459 0.94687 0.78568 1.21339 1.29461 1.09189 0.98332 0.92311 1.25964 0.95941 1.01652 0.95715 1.70061 1.38764 1.41538 1.06714 0.85250 0.78828 0.77986 0.77444 1.18928 1.19790 1.19169 1.22111 0.95064 1.01185 0.87733 1.21260 0.94659 0.98203 1.00651 1.21255 0.94302 0.98355 1.01227 0.90395 0.91317 0.90819 0.84567 0.84723 0.89536 0.90559 0.90670 0.91530 0.93853 0.90303 0.92757 0.93515 0.90276 0.91246 0.93565 0.94515 0.99850 1.00242 0.92053 0.91029 0.93455 0.86001 0.85327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.36 10.01 71.24 0.71 -0.65 16 2 C -0.11 -1.82 5.88 -19.86 -0.12 -1.94 16 3 C -0.13 -2.15 9.70 22.27 0.22 -1.94 16 4 C -0.12 -2.00 8.04 22.27 0.18 -1.83 16 5 C -0.09 -1.70 4.72 -19.87 -0.09 -1.80 16 6 C -0.07 -1.14 4.84 29.85 0.14 -1.00 16 7 C -0.07 -1.58 2.34 -10.74 -0.03 -1.60 16 8 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 9 C -0.10 -2.13 4.78 30.68 0.15 -1.98 16 10 C -0.12 -2.93 6.09 30.65 0.19 -2.74 16 11 C 0.06 1.55 5.30 86.33 0.46 2.01 16 12 N -0.55 -16.88 4.61 -896.38 -4.13 -21.01 16 13 C 0.07 2.16 5.35 86.30 0.46 2.62 16 14 C 0.06 2.17 6.00 71.98 0.43 2.60 16 15 O -0.39 -20.38 10.27 -148.98 -1.53 -21.91 16 16 C 0.21 12.39 5.69 71.24 0.41 12.80 16 17 C -0.55 -33.90 9.43 25.60 0.24 -33.65 16 18 H 0.06 3.64 7.81 -2.91 -0.02 3.62 16 19 C 0.01 0.33 5.46 84.65 0.46 0.79 16 20 N -0.93 -57.52 13.29 21.45 0.28 -57.24 16 21 Si 0.98 45.79 29.54 68.60 2.03 47.82 16 22 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 23 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 24 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 25 C 0.07 1.55 4.74 86.33 0.41 1.96 16 26 C -0.13 -2.63 9.70 22.27 0.22 -2.42 16 27 C -0.13 -2.53 9.70 22.27 0.22 -2.32 16 28 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 29 H 0.07 0.78 8.09 -2.39 -0.02 0.76 16 30 H 0.07 0.76 8.08 -2.39 -0.02 0.74 16 31 H 0.14 1.67 8.06 -2.91 -0.02 1.64 16 32 H 0.13 1.81 8.04 -2.91 -0.02 1.78 16 33 H 0.09 1.20 8.09 -2.38 -0.02 1.18 16 34 H 0.08 1.26 8.08 -2.39 -0.02 1.24 16 35 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.07 1.36 6.45 -2.39 -0.02 1.34 16 37 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.05 1.74 6.12 -2.38 -0.01 1.73 16 40 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.08 2.39 7.99 -2.39 -0.02 2.37 16 42 H 0.07 1.65 8.12 -2.39 -0.02 1.63 16 43 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 44 H 0.04 1.42 6.22 -2.38 -0.01 1.41 16 45 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 46 H -0.02 -1.24 8.14 -2.39 -0.02 -1.26 16 47 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 48 H 0.07 1.68 8.02 -2.39 -0.02 1.66 16 49 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 50 H 0.12 2.34 8.06 -2.91 -0.02 2.31 16 51 H 0.13 2.05 8.06 -2.91 -0.02 2.03 16 Total: -1.00 -71.43 401.80 2.16 -69.27 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: 0.86 Total: 14.14 kcal Atomic # 6 Polarization: -35.72 SS G_CDS: 4.65 Total: -31.07 kcal Atomic # 7 Polarization: -74.40 SS G_CDS: -3.84 Total: -78.25 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: -1.53 Total: -21.91 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Total: -71.43 2.16 -69.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567631106.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.643 kcal (2) G-P(sol) polarization free energy of solvation -71.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds