Wall clock time and date at job start Tue Mar 31 2020 12:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.46956 * 2 1 4 4 C 1.53004 * 109.47238 * 240.00215 * 2 1 3 5 5 C 1.50699 * 109.47254 * 120.00181 * 2 1 3 6 6 C 1.38385 * 119.92435 * 359.97438 * 5 2 1 7 7 C 1.38342 * 120.29104 * 180.02562 * 6 5 2 8 8 C 1.37979 * 120.14224 * 359.97438 * 7 6 5 9 9 C 1.39556 * 119.85586 * 0.02562 * 8 7 6 10 10 C 1.47847 * 120.14286 * 180.02562 * 9 8 7 11 11 O 1.21547 * 119.99443 * 179.97438 * 10 9 8 12 12 N 1.34776 * 119.99889 * 359.97142 * 10 9 8 13 13 C 1.46500 * 119.99682 * 180.02562 * 12 10 9 14 14 C 1.52994 * 109.47329 * 179.97438 * 13 12 10 15 15 C 1.52997 * 109.46995 * 300.00060 * 14 13 12 16 16 C 1.53002 * 109.47142 * 59.99779 * 14 13 12 17 17 C 1.52995 * 109.47602 * 179.97438 * 14 13 12 18 18 C 1.50699 * 109.47625 * 180.02562 * 17 14 13 19 19 H 1.08002 * 119.99867 * 359.97438 * 18 17 14 20 20 C 1.37877 * 120.00348 * 180.02562 * 18 17 14 21 21 N 1.31520 * 119.99998 * 179.97438 * 20 18 17 22 22 Si 1.86804 * 119.99997 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.46812 * 89.99934 * 22 20 18 24 24 H 1.48495 * 109.46940 * 209.99757 * 22 20 18 25 25 H 1.48497 * 109.46866 * 329.99963 * 22 20 18 26 26 C 1.37933 * 119.92803 * 180.02562 * 5 2 1 27 27 H 1.08999 * 109.47174 * 299.99771 * 1 2 3 28 28 H 1.09004 * 109.47216 * 59.99989 * 1 2 3 29 29 H 1.09003 * 109.46806 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47092 * 180.02562 * 3 2 1 31 31 H 1.08995 * 109.47755 * 300.00066 * 3 2 1 32 32 H 1.08999 * 109.46992 * 60.00117 * 3 2 1 33 33 H 1.09009 * 109.46884 * 299.99846 * 4 2 1 34 34 H 1.09004 * 109.47184 * 59.99776 * 4 2 1 35 35 H 1.08999 * 109.47162 * 180.02562 * 4 2 1 36 36 H 1.08001 * 119.85329 * 359.74701 * 6 5 2 37 37 H 1.07993 * 119.92336 * 180.02562 * 7 6 5 38 38 H 1.08000 * 120.06786 * 180.02562 * 8 7 6 39 39 H 0.96994 * 120.00442 * 0.02562 * 12 10 9 40 40 H 1.09009 * 109.46819 * 300.00070 * 13 12 10 41 41 H 1.09001 * 109.47363 * 59.99520 * 13 12 10 42 42 H 1.08994 * 109.47777 * 59.99820 * 15 14 13 43 43 H 1.09005 * 109.47042 * 180.02562 * 15 14 13 44 44 H 1.08996 * 109.47051 * 299.99179 * 15 14 13 45 45 H 1.09003 * 109.47404 * 59.99948 * 16 14 13 46 46 H 1.08998 * 109.47267 * 180.02562 * 16 14 13 47 47 H 1.09003 * 109.47190 * 300.00224 * 16 14 13 48 48 H 1.09001 * 109.47611 * 300.00435 * 17 14 13 49 49 H 1.09001 * 109.46930 * 59.99677 * 17 14 13 50 50 H 0.96993 * 119.99827 * 180.02562 * 21 20 18 51 51 H 1.08000 * 120.07460 * 359.95066 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0324 -0.7104 1.2304 6 6 1.1317 -1.2353 2.1406 7 6 1.5845 -1.8885 3.2729 8 6 2.9388 -2.0210 3.5014 9 6 3.8524 -1.4940 2.5875 10 6 5.3049 -1.6329 2.8257 11 8 6.0982 -1.1732 2.0278 12 7 5.7493 -2.2691 3.9277 13 6 7.1886 -2.4061 4.1640 14 6 7.4207 -3.1616 5.4740 15 6 6.7858 -2.3855 6.6296 16 6 6.7844 -4.5500 5.3818 17 6 8.9238 -3.3053 5.7205 18 6 9.1524 -4.0500 7.0106 19 1 8.3098 -4.3867 7.5964 20 6 10.4372 -4.3005 7.4437 21 7 10.6366 -4.9500 8.5698 22 14 11.8946 -3.7163 6.4316 23 1 12.2811 -2.3492 6.8638 24 1 13.0390 -4.6410 6.6324 25 1 11.5221 -3.6944 4.9943 26 6 3.3888 -0.8351 1.4475 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6766 1.9562 0.8900 33 1 1.6767 -1.7490 -1.2493 34 1 1.6767 -0.2074 -2.1393 35 1 3.1300 -0.7216 -1.2491 36 1 0.0707 -1.1307 1.9684 37 1 0.8765 -2.2962 3.9790 38 1 3.2910 -2.5316 4.3856 39 1 5.1162 -2.6361 4.5643 40 1 7.6409 -2.9587 3.3404 41 1 7.6418 -1.4170 4.2301 42 1 5.7149 -2.2834 6.4539 43 1 6.9515 -2.9235 7.5630 44 1 7.2391 -1.3964 6.6954 45 1 7.2367 -5.1030 4.5584 46 1 6.9494 -5.0880 6.3152 47 1 5.7135 -4.4480 5.2059 48 1 9.3758 -3.8584 4.8972 49 1 9.3774 -2.3164 5.7861 50 1 11.5404 -5.1259 8.8746 51 1 4.0906 -0.4250 0.7364 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000573383154.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:05 Heat of formation + Delta-G solvation = -43.444214 kcal Electronic energy + Delta-G solvation = -26545.532639 eV Core-core repulsion = 23022.562131 eV Total energy + Delta-G solvation = -3522.970508 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.53699 -39.21454 -37.24809 -36.42027 -33.72110 -32.17326 -31.41841 -30.24711 -28.00295 -27.71765 -27.55624 -26.57656 -26.29830 -23.82221 -23.09317 -22.07369 -20.72396 -19.45995 -18.29309 -17.48630 -16.85141 -16.37591 -15.79624 -15.25783 -15.17872 -14.99460 -14.59844 -14.27779 -14.06375 -13.83854 -13.79503 -13.63466 -13.43800 -12.97676 -12.74721 -12.54650 -12.45531 -12.29039 -12.17352 -12.04575 -12.01170 -11.96117 -11.29974 -11.25505 -11.14012 -11.08216 -11.01162 -10.82134 -10.62829 -10.50060 -9.98890 -9.97783 -9.74977 -9.46978 -9.18351 -9.00422 -9.00388 -8.77562 -8.53956 -6.04773 -4.02076 0.71400 1.13010 2.85748 3.31123 3.31851 3.39524 3.43630 3.73213 4.20720 4.39796 4.45328 4.63681 4.64406 4.73915 4.84823 4.97227 5.05103 5.16890 5.27721 5.30257 5.32166 5.36855 5.42366 5.50680 5.51370 5.56506 5.56656 5.60813 5.64709 5.74672 5.83495 5.89443 5.97334 6.08794 6.09829 6.12813 6.14845 6.22726 6.29760 6.33290 6.45700 6.57920 6.64294 6.69118 6.88658 7.00087 7.03542 7.19126 7.35674 7.64082 7.78664 8.31952 8.52252 8.99090 9.57911 11.07899 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.029272 B = 0.002395 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.303763 B =11689.044166 C =12267.773203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.029 4.029 3 C -0.141 4.141 4 C -0.141 4.141 5 C -0.081 4.081 6 C -0.100 4.100 7 C -0.124 4.124 8 C -0.092 4.092 9 C -0.126 4.126 10 C 0.551 3.449 11 O -0.543 6.543 12 N -0.715 5.715 13 C 0.125 3.875 14 C -0.063 4.063 15 C -0.129 4.129 16 C -0.129 4.129 17 C -0.002 4.002 18 C -0.511 4.511 19 H 0.078 0.922 20 C 0.066 3.934 21 N -0.904 5.904 22 Si 0.875 3.125 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.265 1.265 26 C -0.057 4.057 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.129 0.871 37 H 0.128 0.872 38 H 0.126 0.874 39 H 0.399 0.601 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.030 0.970 43 H 0.073 0.927 44 H 0.048 0.952 45 H 0.048 0.952 46 H 0.073 0.927 47 H 0.030 0.970 48 H 0.019 0.981 49 H 0.014 0.986 50 H 0.262 0.738 51 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.896 8.861 -15.381 28.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.029 4.029 3 C -0.198 4.198 4 C -0.198 4.198 5 C -0.081 4.081 6 C -0.119 4.119 7 C -0.142 4.142 8 C -0.111 4.111 9 C -0.129 4.129 10 C 0.338 3.662 11 O -0.422 6.422 12 N -0.367 5.367 13 C 0.002 3.998 14 C -0.063 4.063 15 C -0.187 4.187 16 C -0.186 4.186 17 C -0.040 4.040 18 C -0.548 4.548 19 H 0.096 0.904 20 C -0.135 4.135 21 N -0.543 5.543 22 Si 0.702 3.298 23 H -0.204 1.204 24 H -0.215 1.215 25 H -0.190 1.190 26 C -0.076 4.076 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.147 0.853 37 H 0.146 0.854 38 H 0.144 0.856 39 H 0.236 0.764 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.049 0.951 43 H 0.092 0.908 44 H 0.067 0.933 45 H 0.067 0.933 46 H 0.092 0.908 47 H 0.049 0.951 48 H 0.037 0.963 49 H 0.032 0.968 50 H 0.072 0.928 51 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -22.149 9.108 -15.815 28.699 hybrid contribution 0.660 0.019 0.017 0.661 sum -21.488 9.127 -15.798 28.189 Atomic orbital electron populations 1.21970 0.94079 1.01997 1.02048 1.19505 0.95678 0.95180 0.92538 1.21916 1.01590 0.94386 1.01923 1.21919 1.01589 1.00242 0.96064 1.19790 0.92907 0.99045 0.96355 1.21368 0.99966 0.96813 0.93706 1.21096 0.95323 0.99917 0.97891 1.21349 0.93336 0.98052 0.98319 1.20028 0.93069 1.02656 0.97174 1.18293 0.87888 0.78437 0.81626 1.90754 1.56944 1.48810 1.45707 1.46099 1.09474 1.57297 1.23792 1.21678 0.78916 1.00739 0.98426 1.20693 0.99310 0.94480 0.91864 1.21783 0.97163 1.00069 0.99647 1.21782 0.97142 0.96628 1.03083 1.19592 0.89586 0.96846 0.97970 1.21071 0.93566 1.35315 1.04894 0.90390 1.25004 0.98896 0.94785 0.94796 1.69902 1.21512 1.41434 1.21428 0.86855 0.82591 0.78737 0.81571 1.20376 1.21505 1.18981 1.21080 0.95058 0.95663 0.95808 0.92218 0.92246 0.92218 0.92111 0.92227 0.92424 0.92428 0.92221 0.92111 0.85296 0.85424 0.85644 0.76446 0.91650 0.91662 0.95098 0.90786 0.93334 0.93322 0.90785 0.95110 0.96322 0.96775 0.92796 0.84829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.82 7.13 37.16 0.26 -0.56 16 2 C -0.03 -0.21 0.85 -155.66 -0.13 -0.35 16 3 C -0.14 -1.02 8.28 37.15 0.31 -0.72 16 4 C -0.14 -1.02 8.29 37.16 0.31 -0.72 16 5 C -0.08 -0.75 4.76 -104.68 -0.50 -1.25 16 6 C -0.10 -0.83 8.97 -39.49 -0.35 -1.19 16 7 C -0.12 -1.06 10.03 -39.64 -0.40 -1.46 16 8 C -0.09 -0.93 9.54 -39.18 -0.37 -1.31 16 9 C -0.13 -1.58 5.87 -104.97 -0.62 -2.20 16 10 C 0.55 8.51 7.77 -12.33 -0.10 8.41 16 11 O -0.54 -10.25 16.35 5.32 0.09 -10.16 16 12 N -0.71 -10.38 4.91 -61.25 -0.30 -10.68 16 13 C 0.13 2.13 4.56 -4.05 -0.02 2.11 16 14 C -0.06 -1.15 0.54 -154.51 -0.08 -1.23 16 15 C -0.13 -2.23 8.05 37.16 0.30 -1.93 16 16 C -0.13 -2.23 8.05 37.16 0.30 -1.93 16 17 C 0.00 -0.05 3.11 -27.89 -0.09 -0.14 16 18 C -0.51 -13.61 8.20 -34.44 -0.28 -13.90 16 19 H 0.08 2.19 5.92 -52.49 -0.31 1.88 16 20 C 0.07 1.87 5.47 -17.82 -0.10 1.77 16 21 N -0.90 -27.17 13.96 55.43 0.77 -26.39 16 22 Si 0.87 21.53 27.47 -169.99 -4.67 16.86 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 25 H -0.27 -6.32 6.54 56.52 0.37 -5.96 16 26 C -0.06 -0.66 8.25 -39.19 -0.32 -0.99 16 27 H 0.06 0.32 7.50 -51.93 -0.39 -0.07 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.32 7.51 -51.93 -0.39 -0.07 16 30 H 0.06 0.49 7.38 -51.93 -0.38 0.11 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 34 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.06 0.49 7.38 -51.93 -0.38 0.11 16 36 H 0.13 0.79 5.87 -52.49 -0.31 0.48 16 37 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 38 H 0.13 1.08 6.41 -52.49 -0.34 0.75 16 39 H 0.40 4.92 4.20 -40.82 -0.17 4.75 16 40 H 0.07 1.17 8.14 -51.92 -0.42 0.74 16 41 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.03 0.43 6.86 -51.93 -0.36 0.07 16 43 H 0.07 1.43 6.62 -51.93 -0.34 1.08 16 44 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.07 1.43 6.62 -51.93 -0.34 1.08 16 47 H 0.03 0.43 6.86 -51.93 -0.36 0.07 16 48 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 49 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 50 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 51 H 0.13 1.63 6.68 -52.49 -0.35 1.28 16 LS Contribution 391.41 15.07 5.90 5.90 Total: -1.00 -31.31 391.41 -8.68 -39.99 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -8.59 Total: 2.04 kcal Atomic # 6 Polarization: -15.67 SS G_CDS: -1.88 Total: -17.55 kcal Atomic # 7 Polarization: -37.55 SS G_CDS: 0.47 Total: -37.08 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.09 Total: -10.16 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.67 Total: 16.86 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.31 -8.68 -39.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573383154.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.456 kcal (2) G-P(sol) polarization free energy of solvation -31.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds