Wall clock time and date at job start Tue Mar 31 2020 11:48:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47004 * 2 1 4 4 C 1.53006 * 109.46978 * 119.99838 * 2 1 3 5 5 C 1.50697 * 109.47018 * 299.99982 * 4 2 1 6 6 H 1.07997 * 120.00331 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99619 * 179.97438 * 5 4 2 8 8 N 1.31519 * 120.00119 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99942 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47170 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46987 * 119.99916 * 9 7 5 12 12 H 1.48497 * 109.47585 * 240.00291 * 9 7 5 13 13 C 1.52999 * 109.47043 * 240.00024 * 2 1 3 14 14 N 1.46900 * 109.47155 * 185.77499 * 13 2 1 15 15 C 1.46716 * 110.99714 * 277.20813 * 14 13 2 16 16 C 1.51638 * 108.76949 * 150.59555 * 15 14 13 17 17 C 1.37972 * 120.14951 * 247.08533 * 16 15 14 18 18 C 1.38388 * 119.65791 * 182.31744 * 17 16 15 19 19 C 1.38285 * 120.09834 * 359.97438 * 18 17 16 20 20 C 1.38187 * 120.22743 * 359.50207 * 19 18 17 21 21 C 1.38172 * 119.36966 * 68.41286 * 16 15 14 22 22 O 1.36101 * 119.95416 * 356.98896 * 21 16 15 23 23 C 1.43293 * 115.30547 * 291.43373 * 22 21 16 24 24 C 1.53001 * 109.21780 * 325.20914 * 23 22 21 25 25 C 1.53000 * 109.21974 * 205.86776 * 23 22 21 26 26 C 1.46032 * 111.00075 * 151.21513 * 14 13 2 27 27 H 1.09005 * 109.46952 * 305.64074 * 1 2 3 28 28 H 1.08996 * 109.47132 * 65.63758 * 1 2 3 29 29 H 1.08995 * 109.47182 * 185.64073 * 1 2 3 30 30 H 1.08999 * 109.46606 * 170.28186 * 3 2 1 31 31 H 1.08997 * 109.47205 * 290.27891 * 3 2 1 32 32 H 1.09005 * 109.47140 * 50.28424 * 3 2 1 33 33 H 1.09003 * 109.46643 * 60.00162 * 4 2 1 34 34 H 1.08996 * 109.46964 * 179.97438 * 4 2 1 35 35 H 0.96996 * 119.99731 * 180.02562 * 8 7 5 36 36 H 1.08998 * 109.47036 * 305.77452 * 13 2 1 37 37 H 1.08998 * 109.47279 * 65.77400 * 13 2 1 38 38 H 1.09005 * 109.58568 * 270.38207 * 15 14 13 39 39 H 1.08997 * 109.59174 * 30.80559 * 15 14 13 40 40 H 1.08009 * 120.16727 * 2.29404 * 17 16 15 41 41 H 1.08000 * 119.94949 * 179.97438 * 18 17 16 42 42 H 1.08003 * 119.88556 * 179.48375 * 19 18 17 43 43 H 1.08003 * 120.16253 * 180.02562 * 20 19 18 44 44 H 1.09003 * 109.46987 * 181.27526 * 24 23 22 45 45 H 1.08999 * 109.46661 * 301.27085 * 24 23 22 46 46 H 1.08999 * 109.47504 * 61.27073 * 24 23 22 47 47 H 1.08998 * 109.47372 * 298.72459 * 25 23 22 48 48 H 1.09003 * 109.46548 * 58.72635 * 25 23 22 49 49 H 1.08996 * 109.47006 * 178.72298 * 25 23 22 50 50 H 1.09000 * 108.65425 * 314.91272 * 26 14 13 51 51 H 1.08995 * 108.65478 * 72.77409 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5377 -0.0108 2.4797 6 1 0.9165 0.8670 2.3806 7 6 1.8703 -0.4822 3.7320 8 7 2.6264 -1.5515 3.8527 9 14 1.2483 0.3988 5.2572 10 1 0.4237 1.5659 4.8530 11 1 0.4225 -0.5340 6.0654 12 1 2.4035 0.8647 6.0656 13 6 2.0400 -0.7212 -1.2492 14 7 3.5024 -0.8431 -1.1816 15 6 4.1544 0.3878 -1.6423 16 6 5.4821 0.5347 -0.9246 17 6 5.6725 1.5614 -0.0228 18 6 6.9036 1.7147 0.5904 19 6 7.9364 0.8423 0.3000 20 6 7.7422 -0.1924 -0.5952 21 6 6.5049 -0.3514 -1.2035 22 8 6.2951 -1.3807 -2.0690 23 6 5.3991 -2.3982 -1.6051 24 6 5.5707 -2.5696 -0.0944 25 6 5.7325 -3.7188 -2.3020 26 6 3.9630 -2.0256 -1.9043 27 1 -0.3633 0.5989 0.8352 28 1 -0.3633 0.4239 -0.9361 29 1 -0.3633 -1.0226 0.1010 30 1 3.1161 1.4473 0.1735 31 1 1.8253 1.9038 -0.9639 32 1 1.5420 2.0040 0.7905 33 1 1.6767 -1.7489 1.2493 34 1 3.1300 -0.7216 1.2491 35 1 2.8601 -1.8833 4.7336 36 1 1.5947 -1.7147 -1.3024 37 1 1.7636 -0.1512 -2.1362 38 1 4.3245 0.3309 -2.7175 39 1 3.5197 1.2445 -1.4156 40 1 4.8649 2.2421 0.2031 41 1 7.0579 2.5170 1.2967 42 1 8.8983 0.9701 0.7742 43 1 8.5494 -0.8735 -0.8209 44 1 4.9070 -3.3587 0.2594 45 1 6.6039 -2.8381 0.1257 46 1 5.3234 -1.6344 0.4079 47 1 5.6008 -3.6052 -3.3780 48 1 6.7663 -3.9910 -2.0891 49 1 5.0679 -4.5010 -1.9352 50 1 3.3224 -2.8670 -1.6403 51 1 3.8666 -1.8399 -2.9740 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000576385806.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:32 Heat of formation + Delta-G solvation = -8.216994 kcal Electronic energy + Delta-G solvation = -29342.426413 eV Core-core repulsion = 25820.983472 eV Total energy + Delta-G solvation = -3521.442941 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.70840 -37.97792 -37.56010 -34.87010 -33.32040 -32.16822 -31.19734 -29.50113 -27.36061 -27.01782 -26.88672 -26.27862 -25.72481 -23.22072 -22.52929 -22.21439 -20.61201 -19.86527 -17.85846 -17.08863 -16.23841 -16.04338 -15.75275 -15.23395 -14.95171 -14.67369 -14.47170 -14.13065 -13.78784 -13.40250 -13.27910 -13.00358 -12.76589 -12.62167 -12.38154 -12.24702 -11.92573 -11.79262 -11.74439 -11.58654 -11.49167 -11.33992 -11.27005 -11.01366 -10.95297 -10.80563 -10.64874 -10.52204 -10.32597 -10.23064 -9.98787 -9.63517 -9.50136 -8.95272 -8.69032 -8.55066 -8.21250 -8.15264 -7.72147 -5.85282 -3.84178 1.51064 1.63840 3.36091 3.44357 3.46882 3.60989 4.01952 4.45010 4.55929 4.98370 5.07830 5.09592 5.12369 5.21194 5.29063 5.43634 5.50269 5.55847 5.56419 5.61657 5.67743 5.72633 5.79224 5.87614 5.89984 5.95241 5.99145 6.03843 6.09593 6.13702 6.24293 6.26847 6.28220 6.35029 6.40171 6.48408 6.60844 6.70967 6.75877 6.80978 6.82651 6.87092 7.02944 7.08454 7.22381 7.36265 7.51410 7.59980 7.80721 7.89429 8.10423 8.28662 8.62092 9.23427 9.77301 11.25610 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.012050 B = 0.005328 C = 0.004767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2323.188833 B = 5254.105746 C = 5871.943228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.057 4.057 3 C -0.134 4.134 4 C 0.049 3.951 5 C -0.507 4.507 6 H 0.053 0.947 7 C 0.057 3.943 8 N -0.893 5.893 9 Si 0.879 3.121 10 H -0.275 1.275 11 H -0.287 1.287 12 H -0.287 1.287 13 C 0.074 3.926 14 N -0.523 5.523 15 C 0.083 3.917 16 C -0.094 4.094 17 C -0.087 4.087 18 C -0.129 4.129 19 C -0.111 4.111 20 C -0.139 4.139 21 C 0.114 3.886 22 O -0.329 6.329 23 C 0.120 3.880 24 C -0.168 4.168 25 C -0.138 4.138 26 C 0.047 3.953 27 H 0.062 0.938 28 H 0.026 0.974 29 H 0.045 0.955 30 H 0.063 0.937 31 H 0.025 0.975 32 H 0.056 0.944 33 H 0.005 0.995 34 H 0.036 0.964 35 H 0.255 0.745 36 H 0.064 0.936 37 H 0.024 0.976 38 H 0.042 0.958 39 H 0.102 0.898 40 H 0.128 0.872 41 H 0.121 0.879 42 H 0.120 0.880 43 H 0.122 0.878 44 H 0.069 0.931 45 H 0.049 0.951 46 H 0.087 0.913 47 H 0.060 0.940 48 H 0.064 0.936 49 H 0.074 0.926 50 H 0.082 0.918 51 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.048 1.171 -12.463 14.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.058 4.058 3 C -0.191 4.191 4 C 0.012 3.988 5 C -0.545 4.545 6 H 0.071 0.929 7 C -0.144 4.144 8 N -0.533 5.533 9 Si 0.708 3.292 10 H -0.200 1.200 11 H -0.214 1.214 12 H -0.213 1.213 13 C -0.053 4.053 14 N -0.246 5.246 15 C -0.044 4.044 16 C -0.095 4.095 17 C -0.105 4.105 18 C -0.147 4.147 19 C -0.129 4.129 20 C -0.157 4.157 21 C 0.070 3.930 22 O -0.247 6.247 23 C 0.082 3.918 24 C -0.225 4.225 25 C -0.196 4.196 26 C -0.082 4.082 27 H 0.081 0.919 28 H 0.045 0.955 29 H 0.064 0.936 30 H 0.082 0.918 31 H 0.043 0.957 32 H 0.075 0.925 33 H 0.023 0.977 34 H 0.054 0.946 35 H 0.065 0.935 36 H 0.083 0.917 37 H 0.043 0.957 38 H 0.060 0.940 39 H 0.120 0.880 40 H 0.146 0.854 41 H 0.139 0.861 42 H 0.138 0.862 43 H 0.140 0.860 44 H 0.088 0.912 45 H 0.068 0.932 46 H 0.106 0.894 47 H 0.079 0.921 48 H 0.084 0.916 49 H 0.093 0.907 50 H 0.100 0.900 51 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 7.300 0.944 -12.060 14.129 hybrid contribution -0.647 0.434 0.430 0.890 sum 6.653 1.378 -11.630 13.470 Atomic orbital electron populations 1.21734 0.95918 1.01149 0.99579 1.20620 0.93860 0.95074 0.96232 1.22042 1.01828 0.96603 0.98629 1.18990 0.97489 0.93811 0.88538 1.21377 1.30306 1.11718 0.91116 0.92866 1.24960 0.95571 0.95138 0.98686 1.69984 1.37410 1.23178 1.22720 0.86747 0.78562 0.79786 0.84116 1.19986 1.21379 1.21319 1.22269 0.85525 1.00222 0.97288 1.60723 1.06195 1.01217 1.56477 1.21597 0.92639 0.94515 0.95678 1.20192 0.95353 0.95721 0.98209 1.20970 0.97026 0.97456 0.95078 1.21127 0.93331 0.99955 1.00323 1.20922 0.99058 0.95065 0.97880 1.21111 0.97341 0.99936 0.97313 1.18286 0.93112 0.89135 0.92498 1.86296 1.65754 1.31597 1.41059 1.21544 0.88015 0.86790 0.95417 1.22373 1.01115 1.05145 0.93852 1.21809 1.02576 0.94559 1.00646 1.22101 0.95909 0.94510 0.95640 0.91912 0.95452 0.93586 0.91813 0.95652 0.92497 0.97697 0.94557 0.93522 0.91723 0.95743 0.94037 0.87990 0.85443 0.86104 0.86176 0.86037 0.91244 0.93152 0.89449 0.92116 0.91644 0.90702 0.89969 0.95312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.32 8.10 37.16 0.30 -2.01 16 2 C -0.06 -1.11 0.61 -154.50 -0.09 -1.20 16 3 C -0.13 -2.44 6.43 37.16 0.24 -2.20 16 4 C 0.05 1.20 3.80 -27.88 -0.11 1.09 16 5 C -0.51 -13.68 7.81 -34.44 -0.27 -13.95 16 6 H 0.05 1.41 5.74 -52.49 -0.30 1.11 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 8 N -0.89 -26.54 13.29 55.43 0.74 -25.80 16 9 Si 0.88 21.64 29.54 -169.99 -5.02 16.62 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 12 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 13 C 0.07 1.24 4.21 -3.82 -0.02 1.23 16 14 N -0.52 -8.77 2.49 -237.43 -0.59 -9.36 16 15 C 0.08 1.31 4.26 -4.61 -0.02 1.29 16 16 C -0.09 -1.53 4.65 -104.28 -0.48 -2.02 16 17 C -0.09 -1.36 9.21 -39.62 -0.37 -1.73 16 18 C -0.13 -1.85 10.05 -39.51 -0.40 -2.25 16 19 C -0.11 -1.51 10.03 -39.58 -0.40 -1.91 16 20 C -0.14 -2.02 9.97 -39.40 -0.39 -2.41 16 21 C 0.11 1.83 4.02 -39.40 -0.16 1.67 16 22 O -0.33 -5.24 9.65 -20.06 -0.19 -5.43 16 23 C 0.12 1.76 1.08 -91.45 -0.10 1.66 16 24 C -0.17 -2.79 7.52 37.16 0.28 -2.51 16 25 C -0.14 -1.61 8.77 37.16 0.33 -1.28 16 26 C 0.05 0.71 3.88 -5.13 -0.02 0.69 16 27 H 0.06 1.24 6.78 -51.93 -0.35 0.88 16 28 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.06 1.18 4.10 -51.93 -0.21 0.96 16 31 H 0.02 0.39 7.49 -51.93 -0.39 0.00 16 32 H 0.06 1.10 6.92 -51.93 -0.36 0.74 16 33 H 0.00 0.13 8.14 -51.93 -0.42 -0.29 16 34 H 0.04 0.98 7.45 -51.93 -0.39 0.59 16 35 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 36 H 0.06 1.07 7.46 -51.93 -0.39 0.69 16 37 H 0.02 0.37 7.85 -51.93 -0.41 -0.03 16 38 H 0.04 0.64 7.76 -51.93 -0.40 0.24 16 39 H 0.10 1.58 3.92 -51.93 -0.20 1.37 16 40 H 0.13 1.91 6.58 -52.48 -0.35 1.57 16 41 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 42 H 0.12 1.31 8.06 -52.48 -0.42 0.89 16 43 H 0.12 1.56 8.06 -52.48 -0.42 1.14 16 44 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 45 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.09 1.75 6.00 -51.93 -0.31 1.44 16 47 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 49 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 50 H 0.08 1.20 7.56 -51.93 -0.39 0.80 16 51 H 0.03 0.41 7.90 -51.93 -0.41 0.00 16 LS Contribution 377.30 15.07 5.69 5.69 Total: -1.00 -29.90 377.30 -9.80 -39.70 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -8.65 Total: 2.93 kcal Atomic # 6 Polarization: -22.57 SS G_CDS: -1.77 Total: -24.34 kcal Atomic # 7 Polarization: -35.30 SS G_CDS: 0.14 Total: -35.16 kcal Atomic # 8 Polarization: -5.24 SS G_CDS: -0.19 Total: -5.43 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -29.90 -9.80 -39.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576385806.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.481 kcal (2) G-P(sol) polarization free energy of solvation -29.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds