Wall clock time and date at job start Tue Mar 31 2020 11:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47004 * 2 1 4 4 C 1.53006 * 109.46978 * 119.99838 * 2 1 3 5 5 C 1.50697 * 109.47018 * 299.99982 * 4 2 1 6 6 H 1.07997 * 120.00331 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99619 * 179.97438 * 5 4 2 8 8 N 1.31519 * 120.00119 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99942 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47170 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46987 * 119.99916 * 9 7 5 12 12 H 1.48497 * 109.47585 * 240.00291 * 9 7 5 13 13 C 1.52999 * 109.47043 * 240.00024 * 2 1 3 14 14 N 1.46900 * 109.47155 * 185.77499 * 13 2 1 15 15 C 1.46716 * 110.99714 * 277.20813 * 14 13 2 16 16 C 1.51638 * 108.76949 * 150.59555 * 15 14 13 17 17 C 1.37972 * 120.14951 * 247.08533 * 16 15 14 18 18 C 1.38388 * 119.65791 * 182.31744 * 17 16 15 19 19 C 1.38285 * 120.09834 * 359.97438 * 18 17 16 20 20 C 1.38187 * 120.22743 * 359.50207 * 19 18 17 21 21 C 1.38172 * 119.36966 * 68.41286 * 16 15 14 22 22 O 1.36101 * 119.95416 * 356.98896 * 21 16 15 23 23 C 1.43293 * 115.30547 * 291.43373 * 22 21 16 24 24 C 1.53001 * 109.21780 * 325.20914 * 23 22 21 25 25 C 1.53000 * 109.21974 * 205.86776 * 23 22 21 26 26 C 1.46032 * 111.00075 * 151.21513 * 14 13 2 27 27 H 1.09005 * 109.46952 * 305.64074 * 1 2 3 28 28 H 1.08996 * 109.47132 * 65.63758 * 1 2 3 29 29 H 1.08995 * 109.47182 * 185.64073 * 1 2 3 30 30 H 1.08999 * 109.46606 * 170.28186 * 3 2 1 31 31 H 1.08997 * 109.47205 * 290.27891 * 3 2 1 32 32 H 1.09005 * 109.47140 * 50.28424 * 3 2 1 33 33 H 1.09003 * 109.46643 * 60.00162 * 4 2 1 34 34 H 1.08996 * 109.46964 * 179.97438 * 4 2 1 35 35 H 0.96996 * 119.99731 * 180.02562 * 8 7 5 36 36 H 1.08998 * 109.47036 * 305.77452 * 13 2 1 37 37 H 1.08998 * 109.47279 * 65.77400 * 13 2 1 38 38 H 1.09005 * 109.58568 * 270.38207 * 15 14 13 39 39 H 1.08997 * 109.59174 * 30.80559 * 15 14 13 40 40 H 1.08009 * 120.16727 * 2.29404 * 17 16 15 41 41 H 1.08000 * 119.94949 * 179.97438 * 18 17 16 42 42 H 1.08003 * 119.88556 * 179.48375 * 19 18 17 43 43 H 1.08003 * 120.16253 * 180.02562 * 20 19 18 44 44 H 1.09003 * 109.46987 * 181.27526 * 24 23 22 45 45 H 1.08999 * 109.46661 * 301.27085 * 24 23 22 46 46 H 1.08999 * 109.47504 * 61.27073 * 24 23 22 47 47 H 1.08998 * 109.47372 * 298.72459 * 25 23 22 48 48 H 1.09003 * 109.46548 * 58.72635 * 25 23 22 49 49 H 1.08996 * 109.47006 * 178.72298 * 25 23 22 50 50 H 1.09000 * 108.65425 * 314.91272 * 26 14 13 51 51 H 1.08995 * 108.65478 * 72.77409 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5377 -0.0108 2.4797 6 1 0.9165 0.8670 2.3806 7 6 1.8703 -0.4822 3.7320 8 7 2.6264 -1.5515 3.8527 9 14 1.2483 0.3988 5.2572 10 1 0.4237 1.5659 4.8530 11 1 0.4225 -0.5340 6.0654 12 1 2.4035 0.8647 6.0656 13 6 2.0400 -0.7212 -1.2492 14 7 3.5024 -0.8431 -1.1816 15 6 4.1544 0.3878 -1.6423 16 6 5.4821 0.5347 -0.9246 17 6 5.6725 1.5614 -0.0228 18 6 6.9036 1.7147 0.5904 19 6 7.9364 0.8423 0.3000 20 6 7.7422 -0.1924 -0.5952 21 6 6.5049 -0.3514 -1.2035 22 8 6.2951 -1.3807 -2.0690 23 6 5.3991 -2.3982 -1.6051 24 6 5.5707 -2.5696 -0.0944 25 6 5.7325 -3.7188 -2.3020 26 6 3.9630 -2.0256 -1.9043 27 1 -0.3633 0.5989 0.8352 28 1 -0.3633 0.4239 -0.9361 29 1 -0.3633 -1.0226 0.1010 30 1 3.1161 1.4473 0.1735 31 1 1.8253 1.9038 -0.9639 32 1 1.5420 2.0040 0.7905 33 1 1.6767 -1.7489 1.2493 34 1 3.1300 -0.7216 1.2491 35 1 2.8601 -1.8833 4.7336 36 1 1.5947 -1.7147 -1.3024 37 1 1.7636 -0.1512 -2.1362 38 1 4.3245 0.3309 -2.7175 39 1 3.5197 1.2445 -1.4156 40 1 4.8649 2.2421 0.2031 41 1 7.0579 2.5170 1.2967 42 1 8.8983 0.9701 0.7742 43 1 8.5494 -0.8735 -0.8209 44 1 4.9070 -3.3587 0.2594 45 1 6.6039 -2.8381 0.1257 46 1 5.3234 -1.6344 0.4079 47 1 5.6008 -3.6052 -3.3780 48 1 6.7663 -3.9910 -2.0891 49 1 5.0679 -4.5010 -1.9352 50 1 3.3224 -2.8670 -1.6403 51 1 3.8666 -1.8399 -2.9740 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000576385806.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:31 Heat of formation + Delta-G solvation = -22.742652 kcal Electronic energy + Delta-G solvation = -29343.056293 eV Core-core repulsion = 25820.983472 eV Total energy + Delta-G solvation = -3522.072821 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.90258 -39.35848 -38.74981 -36.34583 -34.60466 -34.10618 -32.39882 -30.67793 -29.14584 -28.47616 -28.16126 -27.59949 -27.03846 -24.99489 -23.92890 -23.46407 -21.82245 -21.03788 -19.46285 -18.35618 -18.14474 -17.33437 -16.99835 -16.49303 -16.40019 -16.16982 -15.80965 -15.56308 -15.04440 -14.79547 -14.69370 -14.38988 -14.22297 -13.89890 -13.80512 -13.60891 -13.30591 -13.01669 -12.96410 -12.94174 -12.87755 -12.76270 -12.67615 -12.54767 -12.53561 -12.32767 -12.17561 -12.11302 -11.99467 -11.65999 -11.57610 -11.10433 -10.85361 -10.72731 -10.58245 -10.38272 -9.70956 -9.32496 -8.99172 -8.03214 -6.08125 0.35433 0.48536 1.39485 1.41517 1.51875 2.46137 2.48381 2.83390 3.26065 3.30384 3.83526 3.88592 3.94171 3.98834 4.02043 4.17730 4.22083 4.28339 4.32590 4.37581 4.52947 4.56632 4.59777 4.61855 4.69812 4.71577 4.75031 4.80566 4.85323 4.87985 4.95173 4.97210 5.00061 5.12511 5.13781 5.22075 5.22347 5.25575 5.39638 5.50399 5.55386 5.59671 5.63108 5.68884 5.70515 5.79370 5.91469 6.05013 6.18099 6.26706 6.32005 6.50792 6.62248 7.10647 7.57401 9.07826 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.012050 B = 0.005328 C = 0.004767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2323.188833 B = 5254.105746 C = 5871.943228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.056 4.056 3 C -0.128 4.128 4 C 0.067 3.933 5 C -0.510 4.510 6 H 0.057 0.943 7 C 0.000 4.000 8 N -0.930 5.930 9 Si 0.943 3.057 10 H -0.263 1.263 11 H -0.286 1.286 12 H -0.286 1.286 13 C 0.080 3.920 14 N -0.543 5.543 15 C 0.088 3.912 16 C -0.111 4.111 17 C -0.106 4.106 18 C -0.137 4.137 19 C -0.110 4.110 20 C -0.146 4.146 21 C 0.096 3.904 22 O -0.333 6.333 23 C 0.120 3.880 24 C -0.157 4.157 25 C -0.133 4.133 26 C 0.046 3.954 27 H 0.045 0.955 28 H 0.061 0.939 29 H 0.037 0.963 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.040 0.960 33 H -0.032 1.032 34 H 0.006 0.994 35 H 0.254 0.746 36 H 0.063 0.937 37 H 0.050 0.950 38 H 0.046 0.954 39 H 0.104 0.896 40 H 0.127 0.873 41 H 0.141 0.859 42 H 0.150 0.850 43 H 0.138 0.862 44 H 0.058 0.942 45 H 0.057 0.943 46 H 0.049 0.951 47 H 0.073 0.927 48 H 0.071 0.929 49 H 0.086 0.914 50 H 0.082 0.918 51 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.189 1.979 -13.579 15.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.057 4.057 3 C -0.185 4.185 4 C 0.030 3.970 5 C -0.549 4.549 6 H 0.076 0.924 7 C -0.196 4.196 8 N -0.572 5.572 9 Si 0.769 3.231 10 H -0.187 1.187 11 H -0.212 1.212 12 H -0.212 1.212 13 C -0.047 4.047 14 N -0.266 5.266 15 C -0.039 4.039 16 C -0.112 4.112 17 C -0.124 4.124 18 C -0.155 4.155 19 C -0.128 4.128 20 C -0.164 4.164 21 C 0.053 3.947 22 O -0.251 6.251 23 C 0.083 3.917 24 C -0.214 4.214 25 C -0.190 4.190 26 C -0.082 4.082 27 H 0.064 0.936 28 H 0.080 0.920 29 H 0.056 0.944 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.059 0.941 33 H -0.014 1.014 34 H 0.025 0.975 35 H 0.063 0.937 36 H 0.082 0.918 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.122 0.878 40 H 0.145 0.855 41 H 0.158 0.842 42 H 0.168 0.832 43 H 0.156 0.844 44 H 0.077 0.923 45 H 0.076 0.924 46 H 0.069 0.931 47 H 0.092 0.908 48 H 0.090 0.910 49 H 0.104 0.896 50 H 0.101 0.899 51 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 7.431 1.766 -13.188 15.240 hybrid contribution -0.659 0.180 0.801 1.053 sum 6.772 1.946 -12.387 14.251 Atomic orbital electron populations 1.21660 0.94932 1.00620 1.00692 1.20534 0.94674 0.95531 0.94959 1.21960 1.01101 0.95587 0.99819 1.18708 0.95378 0.92159 0.90752 1.21766 1.29485 1.11542 0.92071 0.92442 1.25769 0.96000 0.95932 1.01944 1.70131 1.39004 1.24855 1.23234 0.85735 0.78029 0.78921 0.80373 1.18741 1.21218 1.21192 1.22139 0.85789 1.00176 0.96643 1.60637 1.06167 1.02171 1.57638 1.21553 0.92494 0.94094 0.95751 1.20347 0.95797 0.96250 0.98833 1.21141 0.97852 0.97791 0.95636 1.21447 0.93025 1.00656 1.00358 1.21285 1.00114 0.94164 0.97229 1.21393 0.97287 1.00520 0.97213 1.18505 0.93756 0.89340 0.93139 1.86289 1.65913 1.31674 1.41250 1.21652 0.87919 0.87986 0.94114 1.22230 1.01105 1.02649 0.95451 1.21805 1.03254 0.92860 1.01118 1.22140 0.96100 0.93872 0.96103 0.93633 0.91971 0.94398 0.92545 0.92403 0.94110 1.01398 0.97530 0.93710 0.91846 0.93229 0.93625 0.87845 0.85499 0.84151 0.83198 0.84448 0.92284 0.92449 0.93143 0.90790 0.90994 0.89570 0.89937 0.94032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.32 8.10 71.98 0.58 -3.74 16 2 C -0.06 -2.16 0.61 -52.18 -0.03 -2.19 16 3 C -0.13 -4.53 6.43 71.98 0.46 -4.07 16 4 C 0.07 3.41 3.80 29.85 0.11 3.52 16 5 C -0.51 -28.08 7.81 25.60 0.20 -27.88 16 6 H 0.06 3.06 5.74 -2.91 -0.02 3.05 16 7 C 0.00 0.01 5.46 84.65 0.46 0.47 16 8 N -0.93 -57.00 13.29 21.45 0.28 -56.72 16 9 Si 0.94 44.92 29.54 68.60 2.03 46.95 16 10 H -0.26 -11.93 7.11 99.48 0.71 -11.23 16 11 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 12 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 13 C 0.08 2.60 4.21 86.30 0.36 2.96 16 14 N -0.54 -18.11 2.49 -905.10 -2.26 -20.36 16 15 C 0.09 2.74 4.26 85.89 0.37 3.11 16 16 C -0.11 -3.65 4.65 -19.64 -0.09 -3.74 16 17 C -0.11 -3.35 9.21 22.24 0.20 -3.14 16 18 C -0.14 -3.83 10.05 22.32 0.22 -3.60 16 19 C -0.11 -2.85 10.03 22.27 0.22 -2.62 16 20 C -0.15 -4.12 9.97 22.39 0.22 -3.90 16 21 C 0.10 3.08 4.02 22.39 0.09 3.17 16 22 O -0.33 -10.34 9.65 -94.70 -0.91 -11.26 16 23 C 0.12 3.47 1.08 -11.33 -0.01 3.46 16 24 C -0.16 -5.36 7.52 71.98 0.54 -4.81 16 25 C -0.13 -2.86 8.77 71.98 0.63 -2.23 16 26 C 0.05 1.35 3.88 85.93 0.33 1.69 16 27 H 0.04 1.75 6.78 -2.38 -0.02 1.74 16 28 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.06 2.08 4.10 -2.39 -0.01 2.07 16 31 H 0.06 1.66 7.49 -2.39 -0.02 1.64 16 32 H 0.04 1.55 6.92 -2.38 -0.02 1.53 16 33 H -0.03 -1.86 8.14 -2.39 -0.02 -1.88 16 34 H 0.01 0.36 7.45 -2.39 -0.02 0.34 16 35 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 36 H 0.06 2.06 7.46 -2.39 -0.02 2.05 16 37 H 0.05 1.38 7.85 -2.39 -0.02 1.36 16 38 H 0.05 1.36 7.76 -2.38 -0.02 1.34 16 39 H 0.10 3.10 3.92 -2.39 -0.01 3.09 16 40 H 0.13 3.88 6.58 -2.91 -0.02 3.86 16 41 H 0.14 3.25 8.06 -2.91 -0.02 3.22 16 42 H 0.15 2.90 8.06 -2.91 -0.02 2.87 16 43 H 0.14 3.34 8.06 -2.91 -0.02 3.31 16 44 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 45 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 46 H 0.05 2.11 6.00 -2.39 -0.01 2.09 16 47 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 48 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 49 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 50 H 0.08 2.38 7.56 -2.39 -0.02 2.36 16 51 H 0.04 1.12 7.90 -2.39 -0.02 1.10 16 Total: -1.00 -65.99 377.30 4.92 -61.06 By element: Atomic # 1 Polarization: 22.99 SS G_CDS: 0.89 Total: 23.89 kcal Atomic # 6 Polarization: -48.45 SS G_CDS: 4.89 Total: -43.56 kcal Atomic # 7 Polarization: -75.11 SS G_CDS: -1.97 Total: -77.08 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: -0.91 Total: -11.26 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -65.99 4.92 -61.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576385806.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.319 kcal (2) G-P(sol) polarization free energy of solvation -65.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds