Wall clock time and date at job start Tue Mar 31 2020 11:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50702 * 109.46990 * 2 1 4 4 C 1.38161 * 119.97502 * 267.60488 * 3 2 1 5 5 C 1.38708 * 119.94837 * 179.97438 * 4 3 2 6 6 O 1.35895 * 120.06186 * 180.02562 * 5 4 3 7 7 C 1.42902 * 117.00526 * 179.97438 * 6 5 4 8 8 C 1.38761 * 119.88543 * 359.97438 * 5 4 3 9 9 C 1.38117 * 119.94238 * 0.02662 * 8 5 4 10 10 C 1.38243 * 119.96900 * 87.62022 * 3 2 1 11 11 C 1.50698 * 119.94663 * 359.73007 * 10 3 2 12 12 N 1.46905 * 109.46798 * 281.32019 * 11 10 3 13 13 C 1.46854 * 111.00019 * 288.30503 * 12 11 10 14 14 C 1.53031 * 109.52361 * 174.16187 * 13 12 11 15 15 C 1.53124 * 109.27853 * 59.17724 * 14 13 12 16 16 C 1.53002 * 109.51899 * 182.43958 * 15 14 13 17 17 C 1.50697 * 109.47468 * 294.68218 * 16 15 14 18 18 H 1.08002 * 119.99949 * 0.02562 * 17 16 15 19 19 C 1.37878 * 120.00215 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00105 * 179.97438 * 19 17 16 21 21 Si 1.86802 * 119.99883 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.46988 * 89.99611 * 21 19 17 23 23 H 1.48497 * 109.47410 * 209.99749 * 21 19 17 24 24 H 1.48500 * 109.47070 * 329.99890 * 21 19 17 25 25 C 1.53112 * 109.15916 * 302.34508 * 15 14 13 26 26 C 1.46842 * 111.00095 * 164.09672 * 12 11 10 27 27 H 1.08998 * 109.47227 * 299.99416 * 1 2 3 28 28 H 1.09004 * 109.47319 * 60.00146 * 1 2 3 29 29 H 1.09006 * 109.46837 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47227 * 240.00584 * 2 1 3 31 31 H 1.08996 * 109.47599 * 120.00009 * 2 1 3 32 32 H 1.08002 * 120.02499 * 359.97166 * 4 3 2 33 33 H 1.08997 * 109.46894 * 59.99860 * 7 6 5 34 34 H 1.09001 * 109.47176 * 179.97438 * 7 6 5 35 35 H 1.09001 * 109.46716 * 299.99956 * 7 6 5 36 36 H 1.08003 * 120.02672 * 180.02562 * 8 5 4 37 37 H 1.08002 * 119.97291 * 179.97438 * 9 8 5 38 38 H 1.08997 * 109.47085 * 41.31579 * 11 10 3 39 39 H 1.08998 * 109.47235 * 161.32472 * 11 10 3 40 40 H 1.09000 * 109.46019 * 294.18267 * 13 12 11 41 41 H 1.08996 * 109.45906 * 54.14420 * 13 12 11 42 42 H 1.09007 * 109.50365 * 299.23681 * 14 13 12 43 43 H 1.08998 * 109.50281 * 179.11913 * 14 13 12 44 44 H 1.08995 * 109.57113 * 62.28116 * 15 14 13 45 45 H 1.09001 * 109.46898 * 54.68686 * 16 15 14 46 46 H 1.09005 * 109.46460 * 174.68391 * 16 15 14 47 47 H 0.96998 * 119.99614 * 180.02562 * 20 19 17 48 48 H 1.09004 * 109.50935 * 297.71083 * 25 15 14 49 49 H 1.09003 * 109.53285 * 177.61149 * 25 15 14 50 50 H 1.09000 * 109.45951 * 305.85305 * 26 12 11 51 51 H 1.09000 * 109.46296 * 65.83283 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3096 2.0550 -1.1958 5 6 2.7714 3.3629 -1.1951 6 8 3.0443 3.9891 -2.3700 7 6 3.5158 5.3359 -2.2932 8 6 2.9532 4.0314 0.0072 9 6 2.6746 3.3930 1.1999 10 6 2.2156 2.0885 1.1966 11 6 1.9070 1.3964 2.4991 12 7 0.4557 1.4055 2.7266 13 6 -0.0155 2.7546 3.0650 14 6 -1.5434 2.7560 3.1515 15 6 -1.9900 1.7557 4.2214 16 6 -3.5185 1.7080 4.2704 17 6 -4.0481 3.0403 4.7348 18 1 -3.3630 3.8411 4.9709 19 6 -5.4073 3.2372 4.8571 20 7 -5.8694 4.3997 5.2629 21 14 -6.5922 1.8523 4.4479 22 1 -6.8503 1.0452 5.6674 23 1 -7.8702 2.4242 3.9532 24 1 -5.9980 0.9864 3.3979 25 6 -1.4457 0.3683 3.8707 26 6 0.0793 0.4361 3.7633 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 2.1669 1.5327 -2.1303 33 1 4.4449 5.3636 -1.7239 34 1 3.6950 5.7160 -3.2990 35 1 2.7677 5.9551 -1.7983 36 1 3.3123 5.0500 0.0103 37 1 2.8164 3.9127 2.1360 38 1 2.2615 0.3666 2.4563 39 1 2.4059 1.9189 3.3153 40 1 0.4030 3.0551 4.0255 41 1 0.3052 3.4553 2.2941 42 1 -1.9628 2.4689 2.1872 43 1 -1.8919 3.7538 3.4181 44 1 -1.6038 2.0636 5.1930 45 1 -3.9072 1.4891 3.2758 46 1 -3.8356 0.9292 4.9640 47 1 -6.8256 4.5380 5.3493 48 1 -1.8636 0.0435 2.9177 49 1 -1.7244 -0.3404 4.6506 50 1 0.4689 -0.5472 3.4996 51 1 0.4972 0.7476 4.7207 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000577374766.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:06 Heat of formation + Delta-G solvation = -30.707342 kcal Electronic energy + Delta-G solvation = -27396.923823 eV Core-core repulsion = 23874.505627 eV Total energy + Delta-G solvation = -3522.418196 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.47087 -39.03473 -37.74440 -34.62336 -33.79579 -32.40333 -31.01638 -30.33796 -29.62024 -28.30060 -27.46469 -25.23923 -23.81750 -23.15256 -22.56527 -21.86889 -20.61363 -20.06581 -18.96761 -17.82435 -16.69302 -16.64137 -15.93479 -15.74504 -15.47225 -14.95223 -14.57596 -14.26744 -14.07435 -13.70247 -13.65721 -13.46492 -13.16074 -13.13126 -12.86577 -12.76632 -12.46371 -12.21307 -12.02281 -11.92608 -11.78645 -11.61199 -11.34883 -11.21402 -11.00125 -10.82402 -10.69174 -10.65621 -10.63517 -10.46878 -10.12371 -9.68290 -9.55616 -9.23222 -8.96849 -8.82978 -8.48475 -8.20596 -7.99455 -5.99561 -3.96174 1.28688 1.34719 3.10736 3.33879 3.41539 3.46066 3.59368 4.24978 4.49840 4.64530 4.68999 4.85918 4.87093 4.91791 5.09096 5.11035 5.21640 5.23211 5.30494 5.33911 5.37301 5.46781 5.50542 5.55633 5.62636 5.64088 5.72467 5.79353 5.87385 5.97190 5.98277 6.07444 6.09923 6.15704 6.22019 6.25170 6.34583 6.37069 6.52221 6.60332 6.65971 6.69751 6.78826 6.90746 6.99901 7.09300 7.26093 7.30033 7.31979 7.41239 7.55733 7.86295 8.59865 9.05864 9.63996 11.13945 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.015761 B = 0.003103 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.102938 B = 9022.539520 C = 9619.715765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.077 4.077 3 C -0.017 4.017 4 C -0.154 4.154 5 C 0.125 3.875 6 O -0.320 6.320 7 C 0.028 3.972 8 C -0.214 4.214 9 C -0.070 4.070 10 C -0.108 4.108 11 C 0.096 3.904 12 N -0.526 5.526 13 C 0.056 3.944 14 C -0.099 4.099 15 C -0.072 4.072 16 C -0.009 4.009 17 C -0.513 4.513 18 H 0.072 0.928 19 C 0.064 3.936 20 N -0.906 5.906 21 Si 0.878 3.122 22 H -0.279 1.279 23 H -0.289 1.289 24 H -0.265 1.265 25 C -0.114 4.114 26 C 0.059 3.941 27 H 0.099 0.901 28 H 0.045 0.955 29 H 0.047 0.953 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.127 0.873 33 H 0.053 0.947 34 H 0.097 0.903 35 H 0.056 0.944 36 H 0.124 0.876 37 H 0.121 0.879 38 H 0.080 0.920 39 H 0.038 0.962 40 H 0.027 0.973 41 H 0.068 0.932 42 H 0.061 0.939 43 H 0.076 0.924 44 H 0.056 0.944 45 H 0.016 0.984 46 H 0.009 0.991 47 H 0.261 0.739 48 H 0.065 0.935 49 H 0.059 0.941 50 H 0.066 0.934 51 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.189 -5.172 -11.801 24.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.114 4.114 3 C -0.018 4.018 4 C -0.172 4.172 5 C 0.080 3.920 6 O -0.234 6.234 7 C -0.067 4.067 8 C -0.233 4.233 9 C -0.089 4.089 10 C -0.108 4.108 11 C -0.031 4.031 12 N -0.250 5.250 13 C -0.072 4.072 14 C -0.137 4.137 15 C -0.091 4.091 16 C -0.046 4.046 17 C -0.551 4.551 18 H 0.090 0.910 19 C -0.136 4.136 20 N -0.546 5.546 21 Si 0.706 3.294 22 H -0.205 1.205 23 H -0.216 1.216 24 H -0.190 1.190 25 C -0.152 4.152 26 C -0.069 4.069 27 H 0.118 0.882 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.145 0.855 33 H 0.072 0.928 34 H 0.116 0.884 35 H 0.074 0.926 36 H 0.142 0.858 37 H 0.139 0.861 38 H 0.098 0.902 39 H 0.056 0.944 40 H 0.045 0.955 41 H 0.086 0.914 42 H 0.080 0.920 43 H 0.094 0.906 44 H 0.075 0.925 45 H 0.034 0.966 46 H 0.027 0.973 47 H 0.071 0.929 48 H 0.084 0.916 49 H 0.078 0.922 50 H 0.084 0.916 51 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 20.772 -5.289 -12.378 24.752 hybrid contribution -0.264 0.059 0.707 0.757 sum 20.508 -5.230 -11.671 24.169 Atomic orbital electron populations 1.21957 0.93538 1.01587 1.04470 1.20490 0.97422 0.91611 1.01849 1.19515 0.94714 0.96278 0.91282 1.20241 1.05640 0.92784 0.98565 1.18979 0.96044 0.92432 0.84500 1.86049 1.80916 1.27924 1.28516 1.23027 0.98814 0.81114 1.03726 1.21124 1.09039 1.00935 0.92194 1.20823 0.96884 0.93865 0.97342 1.19508 1.02263 0.94414 0.94663 1.20942 0.89141 0.99951 0.93081 1.61956 1.11153 1.07509 1.44388 1.22217 0.97475 0.89053 0.98422 1.21535 0.91830 1.00888 0.99444 1.21039 0.97824 0.92642 0.97569 1.19606 0.91215 0.97377 0.96386 1.21160 0.92316 0.97501 1.44095 0.91020 1.25034 0.98421 0.95371 0.94785 1.69919 1.13605 1.23141 1.47920 0.86805 0.80537 0.82894 0.79203 1.20478 1.21554 1.18958 1.21724 0.93207 0.98699 1.01540 1.22103 0.97323 0.95107 0.92338 0.88224 0.93602 0.93354 0.92083 0.90994 0.85550 0.92809 0.88427 0.92579 0.85788 0.86101 0.90195 0.94421 0.95465 0.91368 0.92001 0.90593 0.92543 0.96586 0.97304 0.92890 0.91593 0.92216 0.91572 0.95302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.86 9.89 37.16 0.37 -1.49 16 2 C -0.08 -0.80 5.61 -27.88 -0.16 -0.96 16 3 C -0.02 -0.20 5.13 -104.65 -0.54 -0.74 16 4 C -0.15 -1.84 9.63 -39.44 -0.38 -2.22 16 5 C 0.13 1.50 6.69 -39.21 -0.26 1.24 16 6 O -0.32 -3.60 10.50 -19.41 -0.20 -3.80 16 7 C 0.03 0.21 9.81 101.05 0.99 1.20 16 8 C -0.21 -2.36 9.04 -39.43 -0.36 -2.72 16 9 C -0.07 -0.80 8.73 -39.61 -0.35 -1.14 16 10 C -0.11 -1.27 4.76 -104.60 -0.50 -1.76 16 11 C 0.10 1.08 4.48 -4.97 -0.02 1.06 16 12 N -0.53 -6.90 2.35 -236.12 -0.55 -7.46 16 13 C 0.06 0.84 5.29 -3.83 -0.02 0.82 16 14 C -0.10 -1.83 5.15 -26.65 -0.14 -1.96 16 15 C -0.07 -1.39 2.20 -90.50 -0.20 -1.59 16 16 C -0.01 -0.20 3.52 -27.88 -0.10 -0.30 16 17 C -0.51 -14.44 9.00 -34.44 -0.31 -14.75 16 18 H 0.07 2.16 7.32 -52.49 -0.38 1.78 16 19 C 0.06 1.88 5.47 -17.82 -0.10 1.78 16 20 N -0.91 -28.08 13.96 55.43 0.77 -27.30 16 21 Si 0.88 21.96 27.47 -169.99 -4.67 17.29 16 22 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 24 H -0.26 -6.39 6.54 56.52 0.37 -6.02 16 25 C -0.11 -1.79 5.38 -26.66 -0.14 -1.93 16 26 C 0.06 0.77 5.44 -3.84 -0.02 0.75 16 27 H 0.10 1.36 5.74 -51.93 -0.30 1.06 16 28 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.57 8.07 -51.93 -0.42 0.15 16 31 H 0.07 0.70 6.24 -51.93 -0.32 0.38 16 32 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 33 H 0.05 0.33 7.66 -51.93 -0.40 -0.06 16 34 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.39 7.66 -51.93 -0.40 -0.01 16 36 H 0.12 1.11 6.30 -52.48 -0.33 0.78 16 37 H 0.12 1.21 8.03 -52.49 -0.42 0.79 16 38 H 0.08 0.81 6.21 -51.93 -0.32 0.49 16 39 H 0.04 0.41 7.90 -51.93 -0.41 0.00 16 40 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 1.01 6.60 -51.93 -0.34 0.67 16 42 H 0.06 1.18 8.14 -51.92 -0.42 0.76 16 43 H 0.08 1.57 7.05 -51.93 -0.37 1.20 16 44 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 46 H 0.01 0.21 7.57 -51.93 -0.39 -0.19 16 47 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 48 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 49 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 50 H 0.07 0.75 7.96 -51.93 -0.41 0.34 16 51 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 387.42 15.07 5.84 5.84 Total: -1.00 -30.93 387.42 -10.03 -40.96 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -8.99 Total: -0.81 kcal Atomic # 6 Polarization: -22.49 SS G_CDS: -2.23 Total: -24.72 kcal Atomic # 7 Polarization: -34.98 SS G_CDS: 0.22 Total: -34.76 kcal Atomic # 8 Polarization: -3.60 SS G_CDS: -0.20 Total: -3.80 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.67 Total: 17.29 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -30.93 -10.03 -40.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577374766.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.257 kcal (2) G-P(sol) polarization free energy of solvation -30.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds