Wall clock time and date at job start Tue Mar 31 2020 11:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50702 * 109.46990 * 2 1 4 4 C 1.38161 * 119.97502 * 267.60488 * 3 2 1 5 5 C 1.38708 * 119.94837 * 179.97438 * 4 3 2 6 6 O 1.35895 * 120.06186 * 180.02562 * 5 4 3 7 7 C 1.42902 * 117.00526 * 179.97438 * 6 5 4 8 8 C 1.38761 * 119.88543 * 359.97438 * 5 4 3 9 9 C 1.38117 * 119.94238 * 0.02662 * 8 5 4 10 10 C 1.38243 * 119.96900 * 87.62022 * 3 2 1 11 11 C 1.50698 * 119.94663 * 359.73007 * 10 3 2 12 12 N 1.46905 * 109.46798 * 281.32019 * 11 10 3 13 13 C 1.46854 * 111.00019 * 288.30503 * 12 11 10 14 14 C 1.53031 * 109.52361 * 174.16187 * 13 12 11 15 15 C 1.53124 * 109.27853 * 59.17724 * 14 13 12 16 16 C 1.53002 * 109.51899 * 182.43958 * 15 14 13 17 17 C 1.50697 * 109.47468 * 294.68218 * 16 15 14 18 18 H 1.08002 * 119.99949 * 0.02562 * 17 16 15 19 19 C 1.37878 * 120.00215 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00105 * 179.97438 * 19 17 16 21 21 Si 1.86802 * 119.99883 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.46988 * 89.99611 * 21 19 17 23 23 H 1.48497 * 109.47410 * 209.99749 * 21 19 17 24 24 H 1.48500 * 109.47070 * 329.99890 * 21 19 17 25 25 C 1.53112 * 109.15916 * 302.34508 * 15 14 13 26 26 C 1.46842 * 111.00095 * 164.09672 * 12 11 10 27 27 H 1.08998 * 109.47227 * 299.99416 * 1 2 3 28 28 H 1.09004 * 109.47319 * 60.00146 * 1 2 3 29 29 H 1.09006 * 109.46837 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47227 * 240.00584 * 2 1 3 31 31 H 1.08996 * 109.47599 * 120.00009 * 2 1 3 32 32 H 1.08002 * 120.02499 * 359.97166 * 4 3 2 33 33 H 1.08997 * 109.46894 * 59.99860 * 7 6 5 34 34 H 1.09001 * 109.47176 * 179.97438 * 7 6 5 35 35 H 1.09001 * 109.46716 * 299.99956 * 7 6 5 36 36 H 1.08003 * 120.02672 * 180.02562 * 8 5 4 37 37 H 1.08002 * 119.97291 * 179.97438 * 9 8 5 38 38 H 1.08997 * 109.47085 * 41.31579 * 11 10 3 39 39 H 1.08998 * 109.47235 * 161.32472 * 11 10 3 40 40 H 1.09000 * 109.46019 * 294.18267 * 13 12 11 41 41 H 1.08996 * 109.45906 * 54.14420 * 13 12 11 42 42 H 1.09007 * 109.50365 * 299.23681 * 14 13 12 43 43 H 1.08998 * 109.50281 * 179.11913 * 14 13 12 44 44 H 1.08995 * 109.57113 * 62.28116 * 15 14 13 45 45 H 1.09001 * 109.46898 * 54.68686 * 16 15 14 46 46 H 1.09005 * 109.46460 * 174.68391 * 16 15 14 47 47 H 0.96998 * 119.99614 * 180.02562 * 20 19 17 48 48 H 1.09004 * 109.50935 * 297.71083 * 25 15 14 49 49 H 1.09003 * 109.53285 * 177.61149 * 25 15 14 50 50 H 1.09000 * 109.45951 * 305.85305 * 26 12 11 51 51 H 1.09000 * 109.46296 * 65.83283 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3096 2.0550 -1.1958 5 6 2.7714 3.3629 -1.1951 6 8 3.0443 3.9891 -2.3700 7 6 3.5158 5.3359 -2.2932 8 6 2.9532 4.0314 0.0072 9 6 2.6746 3.3930 1.1999 10 6 2.2156 2.0885 1.1966 11 6 1.9070 1.3964 2.4991 12 7 0.4557 1.4055 2.7266 13 6 -0.0155 2.7546 3.0650 14 6 -1.5434 2.7560 3.1515 15 6 -1.9900 1.7557 4.2214 16 6 -3.5185 1.7080 4.2704 17 6 -4.0481 3.0403 4.7348 18 1 -3.3630 3.8411 4.9709 19 6 -5.4073 3.2372 4.8571 20 7 -5.8694 4.3997 5.2629 21 14 -6.5922 1.8523 4.4479 22 1 -6.8503 1.0452 5.6674 23 1 -7.8702 2.4242 3.9532 24 1 -5.9980 0.9864 3.3979 25 6 -1.4457 0.3683 3.8707 26 6 0.0793 0.4361 3.7633 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 2.1669 1.5327 -2.1303 33 1 4.4449 5.3636 -1.7239 34 1 3.6950 5.7160 -3.2990 35 1 2.7677 5.9551 -1.7983 36 1 3.3123 5.0500 0.0103 37 1 2.8164 3.9127 2.1360 38 1 2.2615 0.3666 2.4563 39 1 2.4059 1.9189 3.3153 40 1 0.4030 3.0551 4.0255 41 1 0.3052 3.4553 2.2941 42 1 -1.9628 2.4689 2.1872 43 1 -1.8919 3.7538 3.4181 44 1 -1.6038 2.0636 5.1930 45 1 -3.9072 1.4891 3.2758 46 1 -3.8356 0.9292 4.9640 47 1 -6.8256 4.5380 5.3493 48 1 -1.8636 0.0435 2.9177 49 1 -1.7244 -0.3404 4.6506 50 1 0.4689 -0.5472 3.4996 51 1 0.4972 0.7476 4.7207 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000577374766.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:05 Heat of formation + Delta-G solvation = -46.145794 kcal Electronic energy + Delta-G solvation = -27397.593284 eV Core-core repulsion = 23874.505627 eV Total energy + Delta-G solvation = -3523.087657 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.31910 -40.10600 -38.73087 -36.09790 -34.65382 -34.32235 -32.17770 -31.57685 -30.65348 -29.68798 -28.25828 -26.48548 -24.68191 -24.63611 -23.82194 -22.76411 -22.08505 -21.02500 -20.40165 -18.85159 -18.61393 -17.47673 -16.88295 -16.61656 -16.44830 -16.31978 -15.89307 -15.44891 -15.19239 -14.96785 -14.83408 -14.73200 -14.42254 -14.15957 -14.02611 -13.90639 -13.83279 -13.35094 -13.21103 -13.03005 -12.86345 -12.76531 -12.59105 -12.49755 -12.18456 -12.10160 -11.99896 -11.88345 -11.74411 -11.64346 -11.46223 -11.42780 -11.19125 -10.90758 -10.76697 -10.68993 -9.68809 -9.14974 -8.94672 -8.25684 -6.27442 0.43611 0.47604 1.35550 1.37891 1.49860 2.38258 2.39873 2.69889 3.09813 3.23276 3.83338 3.86919 4.00601 4.07473 4.08481 4.14924 4.22794 4.30105 4.34379 4.38093 4.45552 4.45702 4.57500 4.67386 4.68604 4.70144 4.71692 4.74137 4.80021 4.82926 4.88996 4.99023 5.02579 5.09233 5.14581 5.15418 5.22954 5.27909 5.29826 5.37851 5.41363 5.43996 5.50287 5.56368 5.74139 5.76416 5.78545 5.84926 5.92496 6.23134 6.29378 6.35822 6.48933 6.80016 7.36274 8.91149 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.015761 B = 0.003103 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.102938 B = 9022.539520 C = 9619.715765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.072 4.072 3 C -0.023 4.023 4 C -0.170 4.170 5 C 0.114 3.886 6 O -0.338 6.338 7 C 0.020 3.980 8 C -0.220 4.220 9 C -0.078 4.078 10 C -0.118 4.118 11 C 0.100 3.900 12 N -0.526 5.526 13 C 0.070 3.930 14 C -0.093 4.093 15 C -0.069 4.069 16 C -0.006 4.006 17 C -0.517 4.517 18 H 0.032 0.968 19 C 0.001 3.999 20 N -0.955 5.955 21 Si 0.947 3.053 22 H -0.267 1.267 23 H -0.287 1.287 24 H -0.248 1.248 25 C -0.106 4.106 26 C 0.064 3.936 27 H 0.082 0.918 28 H 0.033 0.967 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.130 0.870 33 H 0.065 0.935 34 H 0.118 0.882 35 H 0.058 0.942 36 H 0.141 0.859 37 H 0.131 0.869 38 H 0.099 0.901 39 H 0.044 0.956 40 H 0.027 0.973 41 H 0.069 0.931 42 H 0.052 0.948 43 H 0.039 0.961 44 H 0.043 0.957 45 H 0.014 0.986 46 H 0.014 0.986 47 H 0.264 0.736 48 H 0.065 0.935 49 H 0.070 0.930 50 H 0.096 0.904 51 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.569 -7.534 -12.501 26.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.109 4.109 3 C -0.024 4.024 4 C -0.188 4.188 5 C 0.069 3.931 6 O -0.252 6.252 7 C -0.074 4.074 8 C -0.238 4.238 9 C -0.097 4.097 10 C -0.119 4.119 11 C -0.027 4.027 12 N -0.251 5.251 13 C -0.058 4.058 14 C -0.131 4.131 15 C -0.088 4.088 16 C -0.043 4.043 17 C -0.555 4.555 18 H 0.051 0.949 19 C -0.195 4.195 20 N -0.596 5.596 21 Si 0.771 3.229 22 H -0.192 1.192 23 H -0.213 1.213 24 H -0.171 1.171 25 C -0.144 4.144 26 C -0.064 4.064 27 H 0.101 0.899 28 H 0.052 0.948 29 H 0.077 0.923 30 H 0.091 0.909 31 H 0.102 0.898 32 H 0.148 0.852 33 H 0.084 0.916 34 H 0.136 0.864 35 H 0.076 0.924 36 H 0.159 0.841 37 H 0.149 0.851 38 H 0.117 0.883 39 H 0.062 0.938 40 H 0.045 0.955 41 H 0.088 0.912 42 H 0.071 0.929 43 H 0.058 0.942 44 H 0.061 0.939 45 H 0.033 0.967 46 H 0.033 0.967 47 H 0.072 0.928 48 H 0.084 0.916 49 H 0.089 0.911 50 H 0.115 0.885 51 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 22.180 -7.660 -13.083 26.866 hybrid contribution -0.641 0.930 0.899 1.443 sum 21.539 -6.729 -12.184 25.645 Atomic orbital electron populations 1.21891 0.94534 1.01776 1.02997 1.20486 0.96335 0.91067 1.03017 1.19697 0.94562 0.96954 0.91178 1.20443 1.06150 0.93212 0.99017 1.19184 0.96135 0.92726 0.85077 1.86025 1.81070 1.29622 1.28480 1.23292 0.99253 0.79470 1.05403 1.21348 1.08811 1.01763 0.91885 1.21045 0.96728 0.94005 0.97918 1.19638 1.02642 0.94704 0.94924 1.20974 0.87519 1.01208 0.92961 1.61910 1.12778 1.06068 1.44307 1.21951 0.94639 0.90690 0.98509 1.21382 0.94620 0.98608 0.98496 1.20953 0.95011 0.95573 0.97230 1.19570 0.94254 0.94642 0.95821 1.21486 0.92007 0.98640 1.43387 0.94919 1.26002 1.00596 0.98115 0.94826 1.70077 1.14150 1.25639 1.49765 0.85698 0.77817 0.79629 0.79747 1.19231 1.21306 1.17124 1.21632 0.95193 0.95856 1.01744 1.22088 0.95231 0.96513 0.92538 0.89948 0.94757 0.92311 0.90920 0.89805 0.85211 0.91647 0.86383 0.92376 0.84115 0.85065 0.88264 0.93764 0.95508 0.91227 0.92903 0.94239 0.93875 0.96744 0.96724 0.92759 0.91623 0.91131 0.88528 0.95081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.34 9.89 71.98 0.71 -2.63 16 2 C -0.07 -1.33 5.61 29.85 0.17 -1.16 16 3 C -0.02 -0.51 5.13 -19.88 -0.10 -0.61 16 4 C -0.17 -3.92 9.63 22.36 0.22 -3.70 16 5 C 0.11 2.64 6.69 22.51 0.15 2.79 16 6 O -0.34 -7.32 10.50 -92.37 -0.97 -8.29 16 7 C 0.02 0.27 9.81 113.37 1.11 1.38 16 8 C -0.22 -4.59 9.04 22.37 0.20 -4.39 16 9 C -0.08 -1.66 8.73 22.25 0.19 -1.47 16 10 C -0.12 -2.56 4.76 -19.85 -0.09 -2.65 16 11 C 0.10 1.97 4.48 85.56 0.38 2.35 16 12 N -0.53 -12.66 2.35 -900.94 -2.12 -14.78 16 13 C 0.07 2.06 5.29 86.32 0.46 2.52 16 14 C -0.09 -3.50 5.15 30.65 0.16 -3.35 16 15 C -0.07 -2.65 2.20 -10.71 -0.02 -2.68 16 16 C -0.01 -0.26 3.52 29.85 0.11 -0.16 16 17 C -0.52 -30.07 9.00 25.60 0.23 -29.84 16 18 H 0.03 2.09 7.32 -2.91 -0.02 2.07 16 19 C 0.00 0.03 5.47 84.65 0.46 0.49 16 20 N -0.95 -61.01 13.96 21.45 0.30 -60.71 16 21 Si 0.95 45.29 27.47 68.60 1.88 47.17 16 22 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 23 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 24 H -0.25 -11.05 6.54 99.48 0.65 -10.40 16 25 C -0.11 -3.10 5.38 30.64 0.16 -2.94 16 26 C 0.06 1.47 5.44 86.33 0.47 1.94 16 27 H 0.08 2.09 5.74 -2.39 -0.01 2.08 16 28 H 0.03 0.79 8.14 -2.38 -0.02 0.77 16 29 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 30 H 0.07 1.17 8.07 -2.39 -0.02 1.15 16 31 H 0.08 1.34 6.24 -2.39 -0.01 1.33 16 32 H 0.13 2.77 8.06 -2.91 -0.02 2.75 16 33 H 0.06 0.71 7.66 -2.39 -0.02 0.69 16 34 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.06 0.74 7.66 -2.39 -0.02 0.72 16 36 H 0.14 2.33 6.30 -2.91 -0.02 2.31 16 37 H 0.13 2.42 8.03 -2.91 -0.02 2.40 16 38 H 0.10 1.60 6.21 -2.39 -0.01 1.59 16 39 H 0.04 0.84 7.90 -2.39 -0.02 0.82 16 40 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.07 2.03 6.60 -2.39 -0.02 2.02 16 42 H 0.05 2.05 8.14 -2.38 -0.02 2.03 16 43 H 0.04 1.73 7.05 -2.39 -0.02 1.72 16 44 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 45 H 0.01 0.68 7.20 -2.39 -0.02 0.66 16 46 H 0.01 0.67 7.57 -2.38 -0.02 0.65 16 47 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 48 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 49 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 50 H 0.10 1.73 7.96 -2.39 -0.02 1.71 16 51 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 Total: -1.00 -68.76 387.42 4.89 -63.87 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: 0.83 Total: 16.83 kcal Atomic # 6 Polarization: -49.07 SS G_CDS: 4.97 Total: -44.10 kcal Atomic # 7 Polarization: -73.67 SS G_CDS: -1.82 Total: -75.49 kcal Atomic # 8 Polarization: -7.32 SS G_CDS: -0.97 Total: -8.29 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 1.88 Total: 47.17 kcal Total: -68.76 4.89 -63.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577374766.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.728 kcal (2) G-P(sol) polarization free energy of solvation -68.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds