Wall clock time and date at job start Tue Mar 31 2020 11:08:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 119.99675 * 2 1 4 4 H 1.48502 * 109.47176 * 269.99915 * 3 2 1 5 5 H 1.48491 * 109.47409 * 30.00266 * 3 2 1 6 6 H 1.48502 * 109.46800 * 150.00285 * 3 2 1 7 7 C 1.37880 * 119.99889 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00319 * 0.02562 * 7 2 1 9 9 C 1.50705 * 119.99523 * 179.97438 * 7 2 1 10 10 C 1.53004 * 109.46761 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.46948 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.47129 * 54.99874 * 11 10 9 13 13 N 1.46897 * 109.47179 * 295.00001 * 11 10 9 14 14 C 1.46901 * 111.00103 * 155.00321 * 13 11 10 15 15 C 1.52997 * 109.47351 * 179.97438 * 14 13 11 16 16 H 1.09002 * 109.47045 * 54.99842 * 15 14 13 17 17 C 1.52997 * 109.47232 * 294.99784 * 15 14 13 18 18 C 1.52995 * 109.47310 * 179.97438 * 17 15 14 19 19 C 1.53002 * 109.46602 * 60.00177 * 18 17 15 20 20 C 1.53002 * 109.47454 * 299.99804 * 19 18 17 21 21 C 1.52997 * 109.46978 * 59.99922 * 20 19 18 22 22 H 1.09000 * 109.47140 * 180.02562 * 21 20 19 23 23 O 1.42905 * 109.46921 * 60.00106 * 21 20 19 24 24 C 1.50700 * 109.47025 * 174.99547 * 11 10 9 25 25 C 1.38238 * 119.99679 * 79.72984 * 24 11 10 26 26 C 1.38237 * 120.00015 * 179.76923 * 25 24 11 27 27 C 1.38237 * 119.99648 * 0.47828 * 26 25 24 28 28 C 1.38233 * 120.00057 * 359.79834 * 27 26 25 29 29 C 1.38231 * 120.00407 * 260.00317 * 24 11 10 30 30 H 0.96996 * 120.00175 * 0.02562 * 1 2 3 31 31 H 1.08996 * 109.46999 * 60.00643 * 9 7 2 32 32 H 1.08995 * 109.47251 * 299.99805 * 9 7 2 33 33 H 1.09002 * 109.47157 * 60.00012 * 10 9 7 34 34 H 1.09001 * 109.47052 * 300.00239 * 10 9 7 35 35 H 1.00895 * 111.00171 * 31.04302 * 13 11 10 36 36 H 1.09000 * 109.47383 * 59.99323 * 14 13 11 37 37 H 1.09001 * 109.46871 * 299.99769 * 14 13 11 38 38 H 1.09002 * 109.47153 * 299.99992 * 17 15 14 39 39 H 1.09001 * 109.46832 * 59.99801 * 17 15 14 40 40 H 1.08999 * 109.47330 * 179.97438 * 18 17 15 41 41 H 1.08992 * 109.47458 * 300.00366 * 18 17 15 42 42 H 1.09002 * 109.47067 * 59.99942 * 19 18 17 43 43 H 1.09004 * 109.46930 * 179.97438 * 19 18 17 44 44 H 1.09001 * 109.46380 * 300.00332 * 20 19 18 45 45 H 1.09001 * 109.47142 * 180.02562 * 20 19 18 46 46 H 0.96696 * 114.00036 * 60.00010 * 23 21 20 47 47 H 1.08001 * 119.99880 * 359.97438 * 25 24 11 48 48 H 1.08003 * 119.99864 * 180.25147 * 26 25 24 49 49 H 1.07999 * 119.99581 * 179.76836 * 27 26 25 50 50 H 1.08002 * 119.99907 * 179.97438 * 28 27 26 51 51 H 1.08002 * 119.99752 * 0.02562 * 29 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0014 9 6 3.5116 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0023 11 6 5.5516 -2.6365 -0.0022 12 1 5.9149 -2.0477 0.8401 13 7 6.0413 -2.0501 -1.2569 14 6 7.3887 -1.4903 -1.0858 15 6 7.8639 -0.8908 -2.4108 16 1 7.1327 -0.1635 -2.7636 17 6 8.0172 -2.0045 -3.4487 18 6 8.4918 -1.4049 -4.7738 19 6 9.8401 -0.7122 -4.5661 20 6 9.6870 0.4015 -3.5283 21 6 9.2122 -0.1981 -2.2032 22 1 9.1026 0.5954 -1.4639 23 8 10.1712 -1.1513 -1.7409 24 6 6.0540 -4.0520 0.1206 25 6 6.0831 -4.8738 -0.9906 26 6 6.5484 -6.1708 -0.8790 27 6 6.9752 -6.6489 0.3458 28 6 6.9406 -5.8289 1.4581 29 6 6.4803 -4.5303 1.3454 30 1 -0.4850 0.8400 -0.0004 31 1 3.8752 -0.6805 0.8889 32 1 3.8746 -0.6800 -0.8911 33 1 3.6580 -3.1498 -0.8925 34 1 3.6586 -3.1510 0.8875 35 1 5.4010 -1.3519 -1.6039 36 1 8.0739 -2.2802 -0.7782 37 1 7.3647 -0.7126 -0.3226 38 1 8.7484 -2.7318 -3.0959 39 1 7.0565 -2.4977 -3.5968 40 1 8.6014 -2.1983 -5.5131 41 1 7.7604 -0.6778 -5.1264 42 1 10.5717 -1.4393 -4.2135 43 1 10.1786 -0.2854 -5.5103 44 1 8.9554 1.1285 -3.8809 45 1 10.6475 0.8953 -3.3807 46 1 11.0513 -0.7812 -1.5876 47 1 5.7455 -4.5016 -1.9466 48 1 6.5750 -6.8115 -1.7480 49 1 7.3352 -7.6634 0.4337 50 1 7.2737 -6.2026 2.4150 51 1 6.4529 -3.8898 2.2145 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000577955669.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:05 Heat of formation + Delta-G solvation = -58.022912 kcal Electronic energy + Delta-G solvation = -27386.510527 eV Core-core repulsion = 23862.907839 eV Total energy + Delta-G solvation = -3523.602688 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.67032 -39.06773 -36.59391 -35.12865 -33.56456 -32.42394 -30.63893 -30.55688 -30.11224 -29.69644 -26.66390 -24.33615 -23.33980 -22.57545 -22.24328 -21.13003 -20.70626 -19.90851 -19.45157 -16.98411 -16.93077 -16.46676 -15.78516 -15.51080 -15.19202 -14.81729 -14.64651 -14.22350 -14.12355 -13.96849 -13.79285 -13.20999 -13.07222 -12.95227 -12.78704 -12.61092 -12.46078 -12.27789 -12.09881 -11.99301 -11.65857 -11.48899 -11.04486 -10.99621 -10.98202 -10.92491 -10.74936 -10.56790 -10.47149 -10.07817 -9.93517 -9.79127 -9.74221 -9.66109 -9.22524 -8.63022 -8.56400 -8.32840 -8.11145 -6.06121 -4.04036 1.64314 1.71139 3.26434 3.34572 3.36453 4.06536 4.13122 4.33374 4.41896 4.60873 4.72297 4.78115 5.05749 5.09395 5.15719 5.20736 5.22522 5.27386 5.33416 5.36397 5.40403 5.45999 5.47704 5.61118 5.66257 5.78147 5.80429 5.82737 5.86245 5.90012 5.93383 6.04394 6.08851 6.17479 6.22053 6.26130 6.31778 6.38117 6.46854 6.58231 6.58883 6.74197 6.78458 6.81964 6.93685 7.24209 7.28274 7.31499 7.51085 7.53016 7.74545 7.79104 8.52528 8.99808 9.56063 11.07479 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.007897 B = 0.004840 C = 0.003323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3544.854489 B = 5783.279442 C = 8423.275714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.067 3.933 3 Si 0.878 3.122 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.268 1.268 7 C -0.518 4.518 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.099 4.099 11 C 0.123 3.877 12 H 0.047 0.953 13 N -0.682 5.682 14 C 0.070 3.930 15 C -0.076 4.076 16 H 0.078 0.922 17 C -0.099 4.099 18 C -0.122 4.122 19 C -0.114 4.114 20 C -0.151 4.151 21 C 0.110 3.890 22 H 0.050 0.950 23 O -0.557 6.557 24 C -0.059 4.059 25 C -0.085 4.085 26 C -0.129 4.129 27 C -0.132 4.132 28 C -0.126 4.126 29 C -0.121 4.121 30 H 0.263 0.737 31 H 0.012 0.988 32 H 0.010 0.990 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.349 0.651 36 H 0.077 0.923 37 H 0.022 0.978 38 H 0.066 0.934 39 H 0.074 0.926 40 H 0.059 0.941 41 H 0.058 0.942 42 H 0.066 0.934 43 H 0.054 0.946 44 H 0.070 0.930 45 H 0.060 0.940 46 H 0.370 0.630 47 H 0.129 0.871 48 H 0.115 0.885 49 H 0.113 0.887 50 H 0.114 0.886 51 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.253 -4.380 -5.120 23.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.134 4.134 3 Si 0.706 3.294 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.192 1.192 7 C -0.556 4.556 8 H 0.091 0.909 9 C -0.050 4.050 10 C -0.137 4.137 11 C 0.013 3.987 12 H 0.064 0.936 13 N -0.316 5.316 14 C -0.060 4.060 15 C -0.095 4.095 16 H 0.096 0.904 17 C -0.137 4.137 18 C -0.159 4.159 19 C -0.151 4.151 20 C -0.189 4.189 21 C 0.051 3.949 22 H 0.068 0.932 23 O -0.362 6.362 24 C -0.060 4.060 25 C -0.103 4.103 26 C -0.147 4.147 27 C -0.150 4.150 28 C -0.144 4.144 29 C -0.140 4.140 30 H 0.073 0.927 31 H 0.031 0.969 32 H 0.028 0.972 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.170 0.830 36 H 0.095 0.905 37 H 0.040 0.960 38 H 0.084 0.916 39 H 0.093 0.907 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.085 0.915 43 H 0.073 0.927 44 H 0.088 0.912 45 H 0.079 0.921 46 H 0.216 0.784 47 H 0.147 0.853 48 H 0.133 0.867 49 H 0.131 0.869 50 H 0.132 0.868 51 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 21.780 -5.244 -5.421 23.049 hybrid contribution 0.630 2.239 0.610 2.405 sum 22.411 -3.005 -4.811 23.117 Atomic orbital electron populations 1.69914 1.06277 1.26831 1.51134 1.25029 0.94697 0.99044 0.94630 0.86805 0.80305 0.83856 0.78447 1.20254 1.21405 1.19242 1.21107 0.89344 0.94482 1.50634 0.90948 1.19608 0.97444 0.92233 0.95732 1.21649 0.89927 0.99942 1.02193 1.20580 0.96515 0.90772 0.90823 0.93550 1.60460 1.03515 1.38678 1.28900 1.21916 0.91246 0.97818 0.94991 1.21172 0.93918 0.97994 0.96412 0.90404 1.21369 1.02102 0.97243 0.92938 1.21579 0.96563 0.99717 0.98084 1.21431 0.98242 0.97653 0.97793 1.22233 1.01370 0.98533 0.96738 1.21783 0.89349 0.90309 0.93459 0.93183 1.86572 1.22661 1.38306 1.88630 1.19966 0.97027 0.95980 0.93042 1.21026 0.97636 0.92578 0.99040 1.21144 1.00100 0.96148 0.97279 1.21029 1.01386 0.99341 0.93268 1.20992 1.00939 0.94219 0.98283 1.21032 0.99722 0.95961 0.97263 0.92746 0.96940 0.97222 0.91618 0.91986 0.82951 0.90451 0.95968 0.91562 0.90702 0.92267 0.92356 0.91539 0.92697 0.91158 0.92113 0.78365 0.85328 0.86703 0.86903 0.86756 0.86651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.79 13.96 55.43 0.77 -27.01 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.85 16 3 Si 0.88 21.48 27.47 -169.99 -4.67 16.81 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.27 -6.29 6.54 56.52 0.37 -5.92 16 7 C -0.52 -14.62 9.66 -34.44 -0.33 -14.95 16 8 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 9 C -0.01 -0.29 3.87 -27.88 -0.11 -0.40 16 10 C -0.10 -1.95 4.72 -26.73 -0.13 -2.08 16 11 C 0.12 2.02 2.24 -68.87 -0.15 1.87 16 12 H 0.05 0.79 7.66 -51.93 -0.40 0.39 16 13 N -0.68 -10.32 5.01 -107.95 -0.54 -10.86 16 14 C 0.07 0.96 4.65 -3.83 -0.02 0.94 16 15 C -0.08 -0.90 2.16 -90.62 -0.20 -1.10 16 16 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 17 C -0.10 -1.15 4.94 -26.73 -0.13 -1.29 16 18 C -0.12 -1.22 5.92 -26.73 -0.16 -1.38 16 19 C -0.11 -1.02 5.78 -26.73 -0.15 -1.17 16 20 C -0.15 -1.29 5.64 -26.73 -0.15 -1.44 16 21 C 0.11 1.11 3.21 -26.73 -0.09 1.02 16 22 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 23 O -0.56 -5.62 11.39 -35.23 -0.40 -6.02 16 24 C -0.06 -0.92 4.71 -104.62 -0.49 -1.41 16 25 C -0.08 -1.25 9.32 -39.58 -0.37 -1.62 16 26 C -0.13 -1.70 10.05 -39.58 -0.40 -2.09 16 27 C -0.13 -1.65 10.05 -39.58 -0.40 -2.05 16 28 C -0.13 -1.63 10.05 -39.59 -0.40 -2.03 16 29 C -0.12 -1.75 9.67 -39.59 -0.38 -2.13 16 30 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 31 H 0.01 0.29 7.20 -51.93 -0.37 -0.08 16 32 H 0.01 0.22 5.85 -51.93 -0.30 -0.09 16 33 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 35 H 0.35 5.66 6.47 -39.29 -0.25 5.41 16 36 H 0.08 1.16 7.69 -51.93 -0.40 0.76 16 37 H 0.02 0.32 8.06 -51.93 -0.42 -0.10 16 38 H 0.07 0.86 7.68 -51.93 -0.40 0.46 16 39 H 0.07 0.95 7.75 -51.93 -0.40 0.55 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.07 0.62 7.68 -51.93 -0.40 0.23 16 43 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.37 2.28 9.08 45.56 0.41 2.69 16 47 H 0.13 1.91 7.73 -52.49 -0.41 1.51 16 48 H 0.11 1.27 8.06 -52.48 -0.42 0.85 16 49 H 0.11 1.14 8.06 -52.49 -0.42 0.72 16 50 H 0.11 1.22 8.06 -52.49 -0.42 0.79 16 51 H 0.12 1.55 8.04 -52.49 -0.42 1.13 16 LS Contribution 395.35 15.07 5.96 5.96 Total: -1.00 -30.81 395.35 -11.45 -42.26 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: -8.42 Total: 8.34 kcal Atomic # 6 Polarization: -25.33 SS G_CDS: -4.15 Total: -29.48 kcal Atomic # 7 Polarization: -38.10 SS G_CDS: 0.23 Total: -37.87 kcal Atomic # 8 Polarization: -5.62 SS G_CDS: -0.40 Total: -6.02 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.67 Total: 16.81 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -30.81 -11.45 -42.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577955669.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.763 kcal (2) G-P(sol) polarization free energy of solvation -30.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds