Wall clock time and date at job start Tue Mar 31 2020 11:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 119.99675 * 2 1 4 4 H 1.48502 * 109.47176 * 269.99915 * 3 2 1 5 5 H 1.48491 * 109.47409 * 30.00266 * 3 2 1 6 6 H 1.48502 * 109.46800 * 150.00285 * 3 2 1 7 7 C 1.37880 * 119.99889 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00319 * 0.02562 * 7 2 1 9 9 C 1.50705 * 119.99523 * 179.97438 * 7 2 1 10 10 C 1.53004 * 109.46761 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.46948 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.47129 * 54.99874 * 11 10 9 13 13 N 1.46897 * 109.47179 * 295.00001 * 11 10 9 14 14 C 1.46901 * 111.00103 * 155.00321 * 13 11 10 15 15 C 1.52997 * 109.47351 * 179.97438 * 14 13 11 16 16 H 1.09002 * 109.47045 * 54.99842 * 15 14 13 17 17 C 1.52997 * 109.47232 * 294.99784 * 15 14 13 18 18 C 1.52995 * 109.47310 * 179.97438 * 17 15 14 19 19 C 1.53002 * 109.46602 * 60.00177 * 18 17 15 20 20 C 1.53002 * 109.47454 * 299.99804 * 19 18 17 21 21 C 1.52997 * 109.46978 * 59.99922 * 20 19 18 22 22 H 1.09000 * 109.47140 * 180.02562 * 21 20 19 23 23 O 1.42905 * 109.46921 * 60.00106 * 21 20 19 24 24 C 1.50700 * 109.47025 * 174.99547 * 11 10 9 25 25 C 1.38238 * 119.99679 * 79.72984 * 24 11 10 26 26 C 1.38237 * 120.00015 * 179.76923 * 25 24 11 27 27 C 1.38237 * 119.99648 * 0.47828 * 26 25 24 28 28 C 1.38233 * 120.00057 * 359.79834 * 27 26 25 29 29 C 1.38231 * 120.00407 * 260.00317 * 24 11 10 30 30 H 0.96996 * 120.00175 * 0.02562 * 1 2 3 31 31 H 1.08996 * 109.46999 * 60.00643 * 9 7 2 32 32 H 1.08995 * 109.47251 * 299.99805 * 9 7 2 33 33 H 1.09002 * 109.47157 * 60.00012 * 10 9 7 34 34 H 1.09001 * 109.47052 * 300.00239 * 10 9 7 35 35 H 1.00895 * 111.00171 * 31.04302 * 13 11 10 36 36 H 1.09000 * 109.47383 * 59.99323 * 14 13 11 37 37 H 1.09001 * 109.46871 * 299.99769 * 14 13 11 38 38 H 1.09002 * 109.47153 * 299.99992 * 17 15 14 39 39 H 1.09001 * 109.46832 * 59.99801 * 17 15 14 40 40 H 1.08999 * 109.47330 * 179.97438 * 18 17 15 41 41 H 1.08992 * 109.47458 * 300.00366 * 18 17 15 42 42 H 1.09002 * 109.47067 * 59.99942 * 19 18 17 43 43 H 1.09004 * 109.46930 * 179.97438 * 19 18 17 44 44 H 1.09001 * 109.46380 * 300.00332 * 20 19 18 45 45 H 1.09001 * 109.47142 * 180.02562 * 20 19 18 46 46 H 0.96696 * 114.00036 * 60.00010 * 23 21 20 47 47 H 1.08001 * 119.99880 * 359.97438 * 25 24 11 48 48 H 1.08003 * 119.99864 * 180.25147 * 26 25 24 49 49 H 1.07999 * 119.99581 * 179.76836 * 27 26 25 50 50 H 1.08002 * 119.99907 * 179.97438 * 28 27 26 51 51 H 1.08002 * 119.99752 * 0.02562 * 29 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0014 9 6 3.5116 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0023 11 6 5.5516 -2.6365 -0.0022 12 1 5.9149 -2.0477 0.8401 13 7 6.0413 -2.0501 -1.2569 14 6 7.3887 -1.4903 -1.0858 15 6 7.8639 -0.8908 -2.4108 16 1 7.1327 -0.1635 -2.7636 17 6 8.0172 -2.0045 -3.4487 18 6 8.4918 -1.4049 -4.7738 19 6 9.8401 -0.7122 -4.5661 20 6 9.6870 0.4015 -3.5283 21 6 9.2122 -0.1981 -2.2032 22 1 9.1026 0.5954 -1.4639 23 8 10.1712 -1.1513 -1.7409 24 6 6.0540 -4.0520 0.1206 25 6 6.0831 -4.8738 -0.9906 26 6 6.5484 -6.1708 -0.8790 27 6 6.9752 -6.6489 0.3458 28 6 6.9406 -5.8289 1.4581 29 6 6.4803 -4.5303 1.3454 30 1 -0.4850 0.8400 -0.0004 31 1 3.8752 -0.6805 0.8889 32 1 3.8746 -0.6800 -0.8911 33 1 3.6580 -3.1498 -0.8925 34 1 3.6586 -3.1510 0.8875 35 1 5.4010 -1.3519 -1.6039 36 1 8.0739 -2.2802 -0.7782 37 1 7.3647 -0.7126 -0.3226 38 1 8.7484 -2.7318 -3.0959 39 1 7.0565 -2.4977 -3.5968 40 1 8.6014 -2.1983 -5.5131 41 1 7.7604 -0.6778 -5.1264 42 1 10.5717 -1.4393 -4.2135 43 1 10.1786 -0.2854 -5.5103 44 1 8.9554 1.1285 -3.8809 45 1 10.6475 0.8953 -3.3807 46 1 11.0513 -0.7812 -1.5876 47 1 5.7455 -4.5016 -1.9466 48 1 6.5750 -6.8115 -1.7480 49 1 7.3352 -7.6634 0.4337 50 1 7.2737 -6.2026 2.4150 51 1 6.4529 -3.8898 2.2145 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000577955669.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:04 Heat of formation + Delta-G solvation = -75.943307 kcal Electronic energy + Delta-G solvation = -27387.287613 eV Core-core repulsion = 23862.907839 eV Total energy + Delta-G solvation = -3524.379774 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.65993 -40.04480 -37.84218 -35.96973 -35.28446 -33.92987 -32.19247 -31.67060 -31.02560 -30.62440 -28.27216 -25.55315 -24.76651 -23.38648 -23.32125 -22.36993 -21.96170 -21.09721 -20.53396 -18.99749 -17.72641 -17.59909 -16.82700 -16.63424 -16.45827 -16.07830 -15.85960 -15.53790 -15.16984 -15.09887 -14.94664 -14.72659 -14.27568 -14.17690 -13.99904 -13.75816 -13.64492 -13.41519 -13.32247 -13.07901 -12.86126 -12.78050 -12.42705 -12.33220 -12.20666 -11.87709 -11.82652 -11.78175 -11.61697 -11.53422 -11.39187 -11.31442 -11.30219 -10.81516 -10.77130 -10.52425 -9.69829 -9.47359 -9.34560 -8.30151 -6.34451 0.55981 0.64045 1.33229 1.35675 1.46712 2.34213 2.97518 3.04834 3.18978 3.43079 3.78945 3.87725 3.95391 3.98666 4.09414 4.19296 4.26073 4.29956 4.36007 4.37101 4.40182 4.49157 4.55004 4.57024 4.63058 4.67273 4.73096 4.76773 4.82935 4.87913 4.94715 4.97632 5.01248 5.09457 5.16228 5.22270 5.29010 5.30306 5.33815 5.40649 5.45601 5.49880 5.55312 5.63636 5.66245 5.67879 5.72961 5.81032 6.20895 6.24799 6.28225 6.47650 6.73389 6.98344 7.29750 8.86990 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.007897 B = 0.004840 C = 0.003323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3544.854489 B = 5783.279442 C = 8423.275714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.005 3.995 3 Si 0.951 3.049 4 H -0.262 1.262 5 H -0.285 1.285 6 H -0.249 1.249 7 C -0.531 4.531 8 H 0.028 0.972 9 C -0.005 4.005 10 C -0.087 4.087 11 C 0.136 3.864 12 H 0.043 0.957 13 N -0.679 5.679 14 C 0.078 3.922 15 C -0.077 4.077 16 H 0.076 0.924 17 C -0.091 4.091 18 C -0.121 4.121 19 C -0.111 4.111 20 C -0.146 4.146 21 C 0.113 3.887 22 H 0.054 0.946 23 O -0.573 6.573 24 C -0.079 4.079 25 C -0.099 4.099 26 C -0.133 4.133 27 C -0.130 4.130 28 C -0.128 4.128 29 C -0.135 4.135 30 H 0.266 0.734 31 H 0.014 0.986 32 H 0.024 0.976 33 H 0.054 0.946 34 H 0.049 0.951 35 H 0.342 0.658 36 H 0.065 0.935 37 H 0.018 0.982 38 H 0.051 0.949 39 H 0.057 0.943 40 H 0.062 0.938 41 H 0.058 0.942 42 H 0.062 0.938 43 H 0.067 0.933 44 H 0.071 0.929 45 H 0.080 0.920 46 H 0.388 0.612 47 H 0.120 0.880 48 H 0.136 0.864 49 H 0.143 0.857 50 H 0.140 0.860 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.323 -3.804 -5.412 26.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.191 4.191 3 Si 0.774 3.226 4 H -0.186 1.186 5 H -0.211 1.211 6 H -0.173 1.173 7 C -0.569 4.569 8 H 0.047 0.953 9 C -0.042 4.042 10 C -0.125 4.125 11 C 0.026 3.974 12 H 0.061 0.939 13 N -0.312 5.312 14 C -0.051 4.051 15 C -0.096 4.096 16 H 0.095 0.905 17 C -0.128 4.128 18 C -0.159 4.159 19 C -0.148 4.148 20 C -0.184 4.184 21 C 0.054 3.946 22 H 0.072 0.928 23 O -0.380 6.380 24 C -0.079 4.079 25 C -0.117 4.117 26 C -0.151 4.151 27 C -0.148 4.148 28 C -0.146 4.146 29 C -0.154 4.154 30 H 0.075 0.925 31 H 0.032 0.968 32 H 0.042 0.958 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.163 0.837 36 H 0.083 0.917 37 H 0.036 0.964 38 H 0.070 0.930 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.077 0.923 42 H 0.080 0.920 43 H 0.086 0.914 44 H 0.089 0.911 45 H 0.099 0.901 46 H 0.237 0.763 47 H 0.138 0.862 48 H 0.154 0.846 49 H 0.161 0.839 50 H 0.158 0.842 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 24.884 -4.684 -5.714 25.958 hybrid contribution -0.367 1.902 0.722 2.067 sum 24.517 -2.783 -4.992 25.174 Atomic orbital electron populations 1.70076 1.08368 1.28150 1.52634 1.26017 0.95575 1.03470 0.94056 0.85652 0.79351 0.78207 0.79397 1.18643 1.21130 1.17255 1.21440 0.92057 0.93004 1.50386 0.95321 1.19503 0.93989 0.94552 0.96182 1.21442 0.92570 0.97503 1.01011 1.20337 0.93824 0.92028 0.91236 0.93939 1.60484 1.04001 1.38566 1.28129 1.21848 0.89955 0.97148 0.96119 1.21181 0.95262 0.97961 0.95156 0.90524 1.21242 1.00778 0.96894 0.93930 1.21571 0.97378 0.99890 0.97013 1.21408 0.97184 0.97634 0.98592 1.22203 1.02383 0.98298 0.95518 1.21706 0.88409 0.89967 0.94526 0.92837 1.86532 1.23859 1.38907 1.88725 1.19911 0.98617 0.95407 0.93997 1.21061 0.98520 0.93583 0.98545 1.21430 0.99394 0.95634 0.98627 1.21420 1.00157 1.00612 0.92618 1.21333 1.00007 0.93509 0.99715 1.21222 1.00148 0.97056 0.96970 0.92502 0.96775 0.95791 0.92763 0.93269 0.83699 0.91674 0.96376 0.92981 0.92382 0.91952 0.92323 0.91954 0.91405 0.91059 0.90126 0.76333 0.86208 0.84634 0.83920 0.84190 0.86168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.26 13.96 21.45 0.30 -59.96 16 2 C 0.01 0.32 5.47 84.65 0.46 0.79 16 3 Si 0.95 44.08 27.47 68.60 1.88 45.96 16 4 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 5 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 6 H -0.25 -10.71 6.54 99.48 0.65 -10.06 16 7 C -0.53 -30.98 9.66 25.60 0.25 -30.74 16 8 H 0.03 1.86 7.99 -2.91 -0.02 1.84 16 9 C 0.00 -0.22 3.87 29.85 0.12 -0.11 16 10 C -0.09 -3.54 4.72 30.59 0.14 -3.39 16 11 C 0.14 4.51 2.24 44.17 0.10 4.61 16 12 H 0.04 1.44 7.66 -2.39 -0.02 1.42 16 13 N -0.68 -20.65 5.01 -495.46 -2.48 -23.14 16 14 C 0.08 2.12 4.65 86.30 0.40 2.52 16 15 C -0.08 -1.74 2.16 -10.80 -0.02 -1.77 16 16 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 17 C -0.09 -2.08 4.94 30.59 0.15 -1.93 16 18 C -0.12 -2.27 5.92 30.59 0.18 -2.09 16 19 C -0.11 -1.73 5.78 30.60 0.18 -1.56 16 20 C -0.15 -2.12 5.64 30.59 0.17 -1.95 16 21 C 0.11 2.06 3.21 30.59 0.10 2.16 16 22 H 0.05 0.94 8.14 -2.39 -0.02 0.93 16 23 O -0.57 -10.56 11.39 -148.98 -1.70 -12.26 16 24 C -0.08 -2.44 4.71 -19.87 -0.09 -2.53 16 25 C -0.10 -2.92 9.32 22.27 0.21 -2.71 16 26 C -0.13 -3.31 10.05 22.27 0.22 -3.09 16 27 C -0.13 -2.94 10.05 22.27 0.22 -2.71 16 28 C -0.13 -3.04 10.05 22.27 0.22 -2.82 16 29 C -0.14 -3.82 9.67 22.27 0.22 -3.60 16 30 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 31 H 0.01 0.65 7.20 -2.39 -0.02 0.63 16 32 H 0.02 1.05 5.85 -2.39 -0.01 1.04 16 33 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 34 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.34 11.08 6.47 -89.70 -0.58 10.50 16 36 H 0.06 1.94 7.69 -2.39 -0.02 1.92 16 37 H 0.02 0.50 8.06 -2.39 -0.02 0.49 16 38 H 0.05 1.33 7.68 -2.39 -0.02 1.31 16 39 H 0.06 1.50 7.75 -2.39 -0.02 1.48 16 40 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.06 1.04 7.68 -2.39 -0.02 1.02 16 43 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 44 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 46 H 0.39 3.89 9.08 -74.06 -0.67 3.22 16 47 H 0.12 3.66 7.73 -2.91 -0.02 3.64 16 48 H 0.14 2.73 8.06 -2.91 -0.02 2.71 16 49 H 0.14 2.35 8.06 -2.91 -0.02 2.33 16 50 H 0.14 2.56 8.06 -2.91 -0.02 2.54 16 51 H 0.12 3.16 8.04 -2.91 -0.02 3.14 16 Total: -1.00 -68.24 395.35 0.81 -67.42 By element: Atomic # 1 Polarization: 33.32 SS G_CDS: -0.42 Total: 32.90 kcal Atomic # 6 Polarization: -54.15 SS G_CDS: 3.23 Total: -50.93 kcal Atomic # 7 Polarization: -80.91 SS G_CDS: -2.19 Total: -83.10 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: -1.70 Total: -12.26 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 1.88 Total: 45.96 kcal Total: -68.24 0.81 -67.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577955669.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.522 kcal (2) G-P(sol) polarization free energy of solvation -68.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds