Wall clock time and date at job start Tue Mar 31 2020 11:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00109 * 2 1 4 4 H 1.48501 * 109.47400 * 240.00339 * 3 2 1 5 5 H 1.48507 * 109.47074 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47265 * 120.00364 * 3 2 1 7 7 C 1.37873 * 119.99949 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00296 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00095 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47398 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47559 * 180.02562 * 10 9 7 12 12 H 1.08998 * 109.47376 * 54.99499 * 11 10 9 13 13 N 1.46907 * 109.46886 * 295.00023 * 11 10 9 14 14 C 1.46891 * 111.00090 * 155.00024 * 13 11 10 15 15 C 1.53002 * 109.47278 * 179.97438 * 14 13 11 16 16 H 1.09004 * 109.46733 * 304.99437 * 15 14 13 17 17 C 1.52996 * 109.47346 * 64.99637 * 15 14 13 18 18 C 1.52993 * 109.47473 * 180.02562 * 17 15 14 19 19 C 1.53008 * 109.46733 * 300.00094 * 18 17 15 20 20 C 1.52996 * 109.47409 * 60.00092 * 19 18 17 21 21 C 1.53000 * 109.47233 * 185.00095 * 15 14 13 22 22 H 1.09002 * 109.47398 * 59.99826 * 21 15 14 23 23 O 1.42903 * 109.46726 * 299.99582 * 21 15 14 24 24 C 1.50697 * 109.47534 * 175.00086 * 11 10 9 25 25 C 1.38229 * 120.00395 * 79.72220 * 24 11 10 26 26 C 1.38238 * 120.00273 * 179.80993 * 25 24 11 27 27 C 1.38234 * 119.99995 * 0.42231 * 26 25 24 28 28 C 1.38241 * 119.99699 * 359.81215 * 27 26 25 29 29 C 1.38231 * 119.99938 * 359.97438 * 28 27 26 30 30 H 0.97000 * 119.99741 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.47652 * 59.99764 * 9 7 2 32 32 H 1.09004 * 109.47026 * 300.00074 * 9 7 2 33 33 H 1.09000 * 109.47572 * 59.99292 * 10 9 7 34 34 H 1.09004 * 109.46953 * 299.99948 * 10 9 7 35 35 H 1.00907 * 110.99351 * 278.94967 * 13 11 10 36 36 H 1.09000 * 109.47328 * 59.99845 * 14 13 11 37 37 H 1.09002 * 109.47225 * 299.99774 * 14 13 11 38 38 H 1.09000 * 109.46870 * 60.00183 * 17 15 14 39 39 H 1.09004 * 109.47108 * 300.00289 * 17 15 14 40 40 H 1.09002 * 109.47722 * 180.02562 * 18 17 15 41 41 H 1.09004 * 109.46998 * 59.99561 * 18 17 15 42 42 H 1.09004 * 109.46943 * 299.99499 * 19 18 17 43 43 H 1.09001 * 109.46630 * 179.97438 * 19 18 17 44 44 H 1.08996 * 109.47452 * 179.97438 * 20 19 18 45 45 H 1.09000 * 109.47054 * 59.99785 * 20 19 18 46 46 H 0.96700 * 113.99509 * 180.02562 * 23 21 15 47 47 H 1.08002 * 120.00132 * 0.02562 * 25 24 11 48 48 H 1.08002 * 120.00094 * 180.20684 * 26 25 24 49 49 H 1.07998 * 120.00126 * 179.78383 * 27 26 25 50 50 H 1.07993 * 119.99705 * 179.97438 * 28 27 26 51 51 H 1.07999 * 119.99929 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 1 0.7884 -5.0068 -0.8432 13 7 0.7281 -5.1188 1.2538 14 6 -0.4303 -6.0056 1.0827 15 6 -1.1866 -6.1183 2.4079 16 1 -0.5016 -6.4444 3.1905 17 6 -1.7723 -4.7543 2.7785 18 6 -2.5280 -4.8668 4.1040 19 6 -3.6601 -5.8860 3.9606 20 6 -3.0746 -7.2500 3.5901 21 6 -2.3188 -7.1374 2.2640 22 1 -1.9016 -8.1091 2.0000 23 8 -3.2168 -6.7098 1.2380 24 6 2.4549 -6.1298 -0.1250 25 6 3.1525 -6.5667 0.9855 26 6 4.0436 -7.6175 0.8727 27 6 4.2436 -8.2257 -0.3524 28 6 3.5495 -7.7856 -1.4640 29 6 2.6552 -6.7377 -1.3502 30 1 -0.4850 0.8401 0.0004 31 1 0.6240 -2.5567 -0.8902 32 1 0.6247 -2.5570 0.8897 33 1 2.8720 -3.6043 0.8894 34 1 2.8719 -3.6043 -0.8906 35 1 1.3245 -5.4431 2.0004 36 1 -0.0891 -6.9938 0.7743 37 1 -1.0923 -5.5955 0.3199 38 1 -2.4573 -4.4282 1.9959 39 1 -0.9657 -4.0283 2.8811 40 1 -2.9456 -3.8951 4.3679 41 1 -1.8426 -5.1928 4.8865 42 1 -4.3455 -5.5600 3.1782 43 1 -4.1982 -5.9665 4.9051 44 1 -3.8810 -7.9762 3.4883 45 1 -2.3892 -7.5759 4.3725 46 1 -3.9613 -7.3095 1.0920 47 1 2.9989 -6.0893 1.9420 48 1 4.5862 -7.9610 1.7411 49 1 4.9423 -9.0444 -0.4413 50 1 3.7060 -8.2605 -2.4212 51 1 2.1132 -6.3937 -2.2187 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000577955670.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:08 Heat of formation + Delta-G solvation = -57.691507 kcal Electronic energy + Delta-G solvation = -27267.931360 eV Core-core repulsion = 23744.343043 eV Total energy + Delta-G solvation = -3523.588317 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.68552 -39.12963 -36.38495 -34.96754 -33.44345 -32.34222 -30.83748 -30.21477 -29.91175 -29.52684 -26.26425 -24.28003 -23.34169 -22.53720 -22.27823 -21.07448 -20.74957 -19.89837 -19.32537 -17.05319 -16.82921 -16.08863 -15.63806 -15.39585 -15.16767 -14.60527 -14.55626 -14.34358 -14.08050 -13.80348 -13.78526 -13.24197 -13.02670 -12.84125 -12.70802 -12.54667 -12.25089 -12.00196 -11.88190 -11.60301 -11.48540 -11.34562 -11.12117 -10.92155 -10.81842 -10.73921 -10.62824 -10.44353 -10.36472 -10.24200 -9.85127 -9.63843 -9.56186 -9.29000 -8.93634 -8.82407 -8.41814 -8.18966 -7.87488 -5.83728 -3.84861 1.48337 1.49971 3.41586 3.45707 3.48378 3.90242 4.24852 4.43277 4.58014 4.73291 4.85140 4.92551 4.95681 4.99898 5.07794 5.19456 5.23070 5.33510 5.44735 5.48780 5.51464 5.57417 5.59910 5.63153 5.64689 5.72335 5.80159 5.85640 5.94597 6.03675 6.09981 6.14621 6.22420 6.26966 6.28016 6.35409 6.47202 6.55611 6.57775 6.64189 6.69277 6.78149 6.89863 6.92793 7.10974 7.33232 7.54657 7.66369 7.84618 7.89417 8.12291 8.28181 8.61898 9.23660 9.77368 11.27056 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.007095 B = 0.004839 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3945.248399 B = 5785.378702 C = 9018.268703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.886 3.114 4 H -0.279 1.279 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.518 4.518 8 H 0.049 0.951 9 C 0.032 3.968 10 C -0.090 4.090 11 C 0.126 3.874 12 H 0.081 0.919 13 N -0.663 5.663 14 C 0.070 3.930 15 C -0.072 4.072 16 H 0.072 0.928 17 C -0.103 4.103 18 C -0.120 4.120 19 C -0.115 4.115 20 C -0.149 4.149 21 C 0.111 3.889 22 H 0.047 0.953 23 O -0.554 6.554 24 C -0.095 4.095 25 C -0.119 4.119 26 C -0.119 4.119 27 C -0.134 4.134 28 C -0.120 4.120 29 C -0.116 4.116 30 H 0.258 0.742 31 H 0.007 0.993 32 H 0.035 0.965 33 H 0.048 0.952 34 H 0.046 0.954 35 H 0.332 0.668 36 H 0.018 0.982 37 H 0.080 0.920 38 H 0.070 0.930 39 H 0.081 0.919 40 H 0.061 0.939 41 H 0.054 0.946 42 H 0.067 0.933 43 H 0.053 0.947 44 H 0.059 0.941 45 H 0.067 0.933 46 H 0.370 0.630 47 H 0.121 0.879 48 H 0.117 0.883 49 H 0.116 0.884 50 H 0.117 0.883 51 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.389 -20.279 5.175 21.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.714 3.286 4 H -0.205 1.205 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.557 4.557 8 H 0.068 0.932 9 C -0.005 4.005 10 C -0.128 4.128 11 C 0.016 3.984 12 H 0.099 0.901 13 N -0.294 5.294 14 C -0.059 4.059 15 C -0.091 4.091 16 H 0.091 0.909 17 C -0.141 4.141 18 C -0.158 4.158 19 C -0.152 4.152 20 C -0.187 4.187 21 C 0.051 3.949 22 H 0.065 0.935 23 O -0.359 6.359 24 C -0.096 4.096 25 C -0.138 4.138 26 C -0.137 4.137 27 C -0.152 4.152 28 C -0.138 4.138 29 C -0.134 4.134 30 H 0.068 0.932 31 H 0.026 0.974 32 H 0.053 0.947 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.151 0.849 36 H 0.036 0.964 37 H 0.099 0.901 38 H 0.088 0.912 39 H 0.099 0.901 40 H 0.079 0.921 41 H 0.073 0.927 42 H 0.086 0.914 43 H 0.072 0.928 44 H 0.077 0.923 45 H 0.086 0.914 46 H 0.215 0.785 47 H 0.139 0.861 48 H 0.135 0.865 49 H 0.134 0.866 50 H 0.135 0.865 51 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.496 -19.058 5.057 19.875 hybrid contribution 0.629 -0.524 0.004 0.819 sum -1.867 -19.582 5.062 20.312 Atomic orbital electron populations 1.69972 1.05872 1.26258 1.51171 1.24971 0.94754 0.98834 0.95704 0.86772 0.79646 0.83746 0.78452 1.20462 1.21420 1.20411 1.21287 0.92796 0.91524 1.50085 0.93233 1.18986 0.93701 0.90002 0.97807 1.21627 0.98527 0.92773 0.99899 1.20854 0.92393 0.92612 0.92542 0.90115 1.60637 1.10209 1.52183 1.06324 1.21928 0.92708 0.93893 0.97402 1.21136 0.94541 0.95999 0.97414 0.90943 1.21409 1.00310 0.96086 0.96279 1.21569 0.97174 0.98733 0.98319 1.21448 0.98341 0.94629 1.00798 1.22231 1.00076 0.98066 0.98345 1.21787 0.90154 0.96345 0.86577 0.93515 1.86620 1.39961 1.52405 1.56883 1.21052 0.98101 0.97073 0.93424 1.20963 0.96984 0.97160 0.98675 1.21075 0.98545 0.96593 0.97480 1.21057 1.00416 1.00560 0.93169 1.21113 0.96951 0.97357 0.98378 1.21111 0.98777 0.96175 0.97357 0.93225 0.97433 0.94705 0.93353 0.93523 0.84877 0.96430 0.90135 0.91172 0.90078 0.92059 0.92708 0.91385 0.92818 0.92254 0.91407 0.78453 0.86123 0.86477 0.86636 0.86482 0.86134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.49 13.29 55.43 0.74 -26.75 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.89 22.25 29.54 -169.99 -5.02 17.23 16 4 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 7 C -0.52 -15.07 9.11 -34.44 -0.31 -15.38 16 8 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 9 C 0.03 0.85 4.86 -27.89 -0.14 0.71 16 10 C -0.09 -1.90 4.81 -26.73 -0.13 -2.03 16 11 C 0.13 2.17 2.22 -68.86 -0.15 2.02 16 12 H 0.08 1.47 7.66 -51.93 -0.40 1.07 16 13 N -0.66 -10.71 5.14 -107.95 -0.55 -11.27 16 14 C 0.07 1.02 4.65 -3.83 -0.02 1.01 16 15 C -0.07 -0.92 2.16 -90.62 -0.20 -1.12 16 16 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 17 C -0.10 -1.52 4.94 -26.74 -0.13 -1.65 16 18 C -0.12 -1.48 5.92 -26.73 -0.16 -1.64 16 19 C -0.11 -1.21 5.78 -26.73 -0.15 -1.36 16 20 C -0.15 -1.38 5.64 -26.71 -0.15 -1.53 16 21 C 0.11 1.19 3.21 -26.71 -0.09 1.11 16 22 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 23 O -0.55 -6.39 11.39 -35.23 -0.40 -6.80 16 24 C -0.09 -1.42 4.71 -104.63 -0.49 -1.92 16 25 C -0.12 -1.63 9.11 -39.58 -0.36 -1.99 16 26 C -0.12 -1.44 10.05 -39.58 -0.40 -1.83 16 27 C -0.13 -1.56 10.05 -39.58 -0.40 -1.95 16 28 C -0.12 -1.47 10.05 -39.58 -0.40 -1.87 16 29 C -0.12 -1.62 9.67 -39.58 -0.38 -2.00 16 30 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 31 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.03 0.98 7.75 -51.93 -0.40 0.57 16 33 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.33 4.88 6.36 -39.29 -0.25 4.63 16 36 H 0.02 0.25 8.00 -51.93 -0.42 -0.17 16 37 H 0.08 1.37 7.75 -51.93 -0.40 0.96 16 38 H 0.07 1.19 7.68 -51.93 -0.40 0.79 16 39 H 0.08 1.39 7.75 -51.93 -0.40 0.99 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.07 0.77 7.68 -51.93 -0.40 0.38 16 43 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.37 2.70 9.08 45.56 0.41 3.11 16 47 H 0.12 1.55 6.53 -52.49 -0.34 1.21 16 48 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 49 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 50 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 51 H 0.12 1.59 8.04 -52.49 -0.42 1.17 16 LS Contribution 399.01 15.07 6.01 6.01 Total: -1.00 -31.98 399.01 -11.84 -43.82 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: -8.46 Total: 7.57 kcal Atomic # 6 Polarization: -25.66 SS G_CDS: -4.15 Total: -29.82 kcal Atomic # 7 Polarization: -38.20 SS G_CDS: 0.18 Total: -38.02 kcal Atomic # 8 Polarization: -6.39 SS G_CDS: -0.40 Total: -6.80 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -31.98 -11.84 -43.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577955670.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.873 kcal (2) G-P(sol) polarization free energy of solvation -31.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds