Wall clock time and date at job start Tue Mar 31 2020 11:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00109 * 2 1 4 4 H 1.48501 * 109.47400 * 240.00339 * 3 2 1 5 5 H 1.48507 * 109.47074 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47265 * 120.00364 * 3 2 1 7 7 C 1.37873 * 119.99949 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00296 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00095 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47398 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47559 * 180.02562 * 10 9 7 12 12 H 1.08998 * 109.47376 * 54.99499 * 11 10 9 13 13 N 1.46907 * 109.46886 * 295.00023 * 11 10 9 14 14 C 1.46891 * 111.00090 * 155.00024 * 13 11 10 15 15 C 1.53002 * 109.47278 * 179.97438 * 14 13 11 16 16 H 1.09004 * 109.46733 * 304.99437 * 15 14 13 17 17 C 1.52996 * 109.47346 * 64.99637 * 15 14 13 18 18 C 1.52993 * 109.47473 * 180.02562 * 17 15 14 19 19 C 1.53008 * 109.46733 * 300.00094 * 18 17 15 20 20 C 1.52996 * 109.47409 * 60.00092 * 19 18 17 21 21 C 1.53000 * 109.47233 * 185.00095 * 15 14 13 22 22 H 1.09002 * 109.47398 * 59.99826 * 21 15 14 23 23 O 1.42903 * 109.46726 * 299.99582 * 21 15 14 24 24 C 1.50697 * 109.47534 * 175.00086 * 11 10 9 25 25 C 1.38229 * 120.00395 * 79.72220 * 24 11 10 26 26 C 1.38238 * 120.00273 * 179.80993 * 25 24 11 27 27 C 1.38234 * 119.99995 * 0.42231 * 26 25 24 28 28 C 1.38241 * 119.99699 * 359.81215 * 27 26 25 29 29 C 1.38231 * 119.99938 * 359.97438 * 28 27 26 30 30 H 0.97000 * 119.99741 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.47652 * 59.99764 * 9 7 2 32 32 H 1.09004 * 109.47026 * 300.00074 * 9 7 2 33 33 H 1.09000 * 109.47572 * 59.99292 * 10 9 7 34 34 H 1.09004 * 109.46953 * 299.99948 * 10 9 7 35 35 H 1.00907 * 110.99351 * 278.94967 * 13 11 10 36 36 H 1.09000 * 109.47328 * 59.99845 * 14 13 11 37 37 H 1.09002 * 109.47225 * 299.99774 * 14 13 11 38 38 H 1.09000 * 109.46870 * 60.00183 * 17 15 14 39 39 H 1.09004 * 109.47108 * 300.00289 * 17 15 14 40 40 H 1.09002 * 109.47722 * 180.02562 * 18 17 15 41 41 H 1.09004 * 109.46998 * 59.99561 * 18 17 15 42 42 H 1.09004 * 109.46943 * 299.99499 * 19 18 17 43 43 H 1.09001 * 109.46630 * 179.97438 * 19 18 17 44 44 H 1.08996 * 109.47452 * 179.97438 * 20 19 18 45 45 H 1.09000 * 109.47054 * 59.99785 * 20 19 18 46 46 H 0.96700 * 113.99509 * 180.02562 * 23 21 15 47 47 H 1.08002 * 120.00132 * 0.02562 * 25 24 11 48 48 H 1.08002 * 120.00094 * 180.20684 * 26 25 24 49 49 H 1.07998 * 120.00126 * 179.78383 * 27 26 25 50 50 H 1.07993 * 119.99705 * 179.97438 * 28 27 26 51 51 H 1.07999 * 119.99929 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 1 0.7884 -5.0068 -0.8432 13 7 0.7281 -5.1188 1.2538 14 6 -0.4303 -6.0056 1.0827 15 6 -1.1866 -6.1183 2.4079 16 1 -0.5016 -6.4444 3.1905 17 6 -1.7723 -4.7543 2.7785 18 6 -2.5280 -4.8668 4.1040 19 6 -3.6601 -5.8860 3.9606 20 6 -3.0746 -7.2500 3.5901 21 6 -2.3188 -7.1374 2.2640 22 1 -1.9016 -8.1091 2.0000 23 8 -3.2168 -6.7098 1.2380 24 6 2.4549 -6.1298 -0.1250 25 6 3.1525 -6.5667 0.9855 26 6 4.0436 -7.6175 0.8727 27 6 4.2436 -8.2257 -0.3524 28 6 3.5495 -7.7856 -1.4640 29 6 2.6552 -6.7377 -1.3502 30 1 -0.4850 0.8401 0.0004 31 1 0.6240 -2.5567 -0.8902 32 1 0.6247 -2.5570 0.8897 33 1 2.8720 -3.6043 0.8894 34 1 2.8719 -3.6043 -0.8906 35 1 1.3245 -5.4431 2.0004 36 1 -0.0891 -6.9938 0.7743 37 1 -1.0923 -5.5955 0.3199 38 1 -2.4573 -4.4282 1.9959 39 1 -0.9657 -4.0283 2.8811 40 1 -2.9456 -3.8951 4.3679 41 1 -1.8426 -5.1928 4.8865 42 1 -4.3455 -5.5600 3.1782 43 1 -4.1982 -5.9665 4.9051 44 1 -3.8810 -7.9762 3.4883 45 1 -2.3892 -7.5759 4.3725 46 1 -3.9613 -7.3095 1.0920 47 1 2.9989 -6.0893 1.9420 48 1 4.5862 -7.9610 1.7411 49 1 4.9423 -9.0444 -0.4413 50 1 3.7060 -8.2605 -2.4212 51 1 2.1132 -6.3937 -2.2187 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000577955670.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:07 Heat of formation + Delta-G solvation = -76.671088 kcal Electronic energy + Delta-G solvation = -27268.754377 eV Core-core repulsion = 23744.343043 eV Total energy + Delta-G solvation = -3524.411333 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.78089 -40.10102 -37.65191 -35.97067 -35.34268 -33.84297 -31.92710 -31.80795 -30.91214 -30.58616 -28.01603 -25.68948 -24.81512 -23.53714 -23.28531 -22.53272 -21.93551 -21.24150 -20.49601 -18.48965 -17.95765 -17.70007 -16.68542 -16.59719 -16.47817 -16.15708 -15.65912 -15.54054 -15.21942 -15.12151 -14.88150 -14.52612 -14.23734 -14.13807 -14.01827 -13.70886 -13.57000 -13.34581 -13.32396 -12.93165 -12.85432 -12.68588 -12.51266 -12.39270 -12.22870 -12.07488 -11.86215 -11.78361 -11.59399 -11.57100 -11.36076 -11.25856 -11.09166 -10.80003 -10.51497 -10.47809 -9.81389 -9.57800 -9.18933 -8.12573 -6.23631 0.46089 0.50965 1.39102 1.42776 1.50471 2.43839 2.89141 3.19174 3.22628 3.44833 3.77918 3.86142 3.92971 3.93857 3.99534 4.16798 4.19490 4.29736 4.34327 4.37269 4.45725 4.53073 4.57657 4.59223 4.64752 4.67239 4.69211 4.80089 4.86373 4.91133 5.00571 5.04770 5.08998 5.12327 5.16037 5.17886 5.29181 5.34519 5.36998 5.43189 5.54261 5.57108 5.59949 5.62170 5.67513 5.67751 5.86579 6.02382 6.13660 6.23815 6.34179 6.61073 6.95104 7.02308 7.44224 8.98363 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.007095 B = 0.004839 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3945.248399 B = 5785.378702 C = 9018.268703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.001 3.999 3 Si 0.960 3.040 4 H -0.268 1.268 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.543 4.543 8 H 0.054 0.946 9 C 0.044 3.956 10 C -0.075 4.075 11 C 0.139 3.861 12 H 0.060 0.940 13 N -0.678 5.678 14 C 0.082 3.918 15 C -0.068 4.068 16 H 0.089 0.911 17 C -0.098 4.098 18 C -0.118 4.118 19 C -0.112 4.112 20 C -0.142 4.142 21 C 0.112 3.888 22 H 0.064 0.936 23 O -0.579 6.579 24 C -0.112 4.112 25 C -0.128 4.128 26 C -0.118 4.118 27 C -0.129 4.129 28 C -0.121 4.121 29 C -0.133 4.133 30 H 0.261 0.739 31 H -0.027 1.027 32 H 0.007 0.993 33 H 0.049 0.951 34 H 0.042 0.958 35 H 0.341 0.659 36 H 0.028 0.972 37 H 0.047 0.953 38 H 0.036 0.964 39 H 0.045 0.955 40 H 0.050 0.950 41 H 0.069 0.931 42 H 0.054 0.946 43 H 0.072 0.928 44 H 0.083 0.917 45 H 0.080 0.920 46 H 0.388 0.612 47 H 0.124 0.876 48 H 0.145 0.855 49 H 0.148 0.852 50 H 0.142 0.858 51 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.757 -22.671 6.336 23.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.785 3.215 4 H -0.193 1.193 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.581 4.581 8 H 0.072 0.928 9 C 0.007 3.993 10 C -0.114 4.114 11 C 0.029 3.971 12 H 0.078 0.922 13 N -0.310 5.310 14 C -0.047 4.047 15 C -0.087 4.087 16 H 0.108 0.892 17 C -0.135 4.135 18 C -0.156 4.156 19 C -0.149 4.149 20 C -0.180 4.180 21 C 0.053 3.947 22 H 0.082 0.918 23 O -0.386 6.386 24 C -0.114 4.114 25 C -0.147 4.147 26 C -0.136 4.136 27 C -0.146 4.146 28 C -0.139 4.139 29 C -0.151 4.151 30 H 0.069 0.931 31 H -0.008 1.008 32 H 0.025 0.975 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.162 0.838 36 H 0.046 0.954 37 H 0.065 0.935 38 H 0.055 0.945 39 H 0.064 0.936 40 H 0.068 0.932 41 H 0.087 0.913 42 H 0.072 0.928 43 H 0.090 0.910 44 H 0.102 0.898 45 H 0.099 0.901 46 H 0.237 0.763 47 H 0.142 0.858 48 H 0.163 0.837 49 H 0.166 0.834 50 H 0.159 0.841 51 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -0.865 -21.475 6.219 22.374 hybrid contribution 0.119 0.208 -0.398 0.465 sum -0.746 -21.267 5.821 22.062 Atomic orbital electron populations 1.70130 1.07744 1.27430 1.51839 1.25930 0.95677 1.03066 0.94944 0.85586 0.78345 0.78501 0.79099 1.19310 1.20811 1.19199 1.21727 0.93246 0.92861 1.50294 0.92778 1.18772 0.93913 0.91903 0.94728 1.21369 0.97320 0.93082 0.99583 1.20420 0.92337 0.91967 0.92375 0.92219 1.60530 1.10809 1.53395 1.06232 1.21775 0.91631 0.93489 0.97845 1.21139 0.95555 0.95516 0.96493 0.89241 1.21261 0.98746 0.96614 0.96912 1.21548 0.97947 0.99207 0.96866 1.21420 0.97359 0.94823 1.01334 1.22195 1.00801 0.97555 0.97406 1.21796 0.89573 0.95814 0.87536 0.91819 1.86596 1.40987 1.53696 1.57368 1.20740 0.98734 0.97135 0.94789 1.21080 0.97402 0.97971 0.98221 1.21415 0.97747 0.95575 0.98861 1.21484 0.99971 1.00705 0.92479 1.21415 0.96020 0.96472 0.99979 1.21234 0.99771 0.97261 0.96873 0.93053 1.00827 0.97462 0.93271 0.93927 0.83793 0.95386 0.93471 0.94547 0.93591 0.93151 0.91268 0.92756 0.90957 0.89833 0.90107 0.76347 0.85844 0.83722 0.83439 0.84059 0.86523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.63 13.29 21.45 0.28 -59.34 16 2 C 0.00 0.08 5.46 84.65 0.46 0.54 16 3 Si 0.96 46.35 29.54 68.60 2.03 48.38 16 4 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 5 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 6 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 7 C -0.54 -32.76 9.11 25.60 0.23 -32.53 16 8 H 0.05 3.14 7.74 -2.91 -0.02 3.11 16 9 C 0.04 2.48 4.86 29.85 0.15 2.63 16 10 C -0.08 -3.36 4.81 30.59 0.15 -3.21 16 11 C 0.14 5.12 2.22 44.17 0.10 5.22 16 12 H 0.06 2.40 7.66 -2.39 -0.02 2.38 16 13 N -0.68 -23.37 5.14 -495.46 -2.55 -25.92 16 14 C 0.08 2.53 4.65 86.31 0.40 2.93 16 15 C -0.07 -1.77 2.16 -10.79 -0.02 -1.79 16 16 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 17 C -0.10 -3.09 4.94 30.59 0.15 -2.94 16 18 C -0.12 -2.94 5.92 30.59 0.18 -2.76 16 19 C -0.11 -2.22 5.78 30.60 0.18 -2.04 16 20 C -0.14 -2.26 5.64 30.61 0.17 -2.08 16 21 C 0.11 2.27 3.21 30.61 0.10 2.37 16 22 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 23 O -0.58 -13.43 11.39 -148.98 -1.70 -15.12 16 24 C -0.11 -3.40 4.71 -19.87 -0.09 -3.50 16 25 C -0.13 -3.36 9.11 22.27 0.20 -3.15 16 26 C -0.12 -2.49 10.05 22.27 0.22 -2.27 16 27 C -0.13 -2.52 10.05 22.27 0.22 -2.30 16 28 C -0.12 -2.68 10.05 22.27 0.22 -2.45 16 29 C -0.13 -3.69 9.67 22.27 0.22 -3.47 16 30 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 31 H -0.03 -1.66 8.14 -2.39 -0.02 -1.68 16 32 H 0.01 0.43 7.75 -2.39 -0.02 0.41 16 33 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.34 10.38 6.36 -89.69 -0.57 9.81 16 36 H 0.03 0.81 8.00 -2.39 -0.02 0.79 16 37 H 0.05 1.76 7.75 -2.39 -0.02 1.74 16 38 H 0.04 1.36 7.68 -2.39 -0.02 1.34 16 39 H 0.05 1.73 7.75 -2.38 -0.02 1.72 16 40 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.05 1.23 7.68 -2.39 -0.02 1.21 16 43 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 46 H 0.39 5.36 9.08 -74.06 -0.67 4.69 16 47 H 0.12 3.06 6.53 -2.91 -0.02 3.05 16 48 H 0.15 2.23 8.06 -2.91 -0.02 2.21 16 49 H 0.15 1.97 8.06 -2.91 -0.02 1.94 16 50 H 0.14 2.38 8.06 -2.91 -0.02 2.36 16 51 H 0.12 3.20 8.04 -2.91 -0.02 3.18 16 Total: -1.00 -73.36 399.01 0.95 -72.40 By element: Atomic # 1 Polarization: 30.77 SS G_CDS: -0.35 Total: 30.42 kcal Atomic # 6 Polarization: -54.05 SS G_CDS: 3.24 Total: -50.81 kcal Atomic # 7 Polarization: -83.00 SS G_CDS: -2.26 Total: -85.26 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: -1.70 Total: -15.12 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.38 kcal Total: -73.36 0.95 -72.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577955670.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.269 kcal (2) G-P(sol) polarization free energy of solvation -73.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds