Wall clock time and date at job start Tue Mar 31 2020 11:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00182 * 2 1 4 4 H 1.48499 * 109.47172 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47017 * 299.99759 * 3 2 1 6 6 H 1.48500 * 109.47026 * 59.99522 * 3 2 1 7 7 C 1.37884 * 119.99812 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99569 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00233 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47182 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47234 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.47002 * 55.00002 * 11 10 9 13 13 N 1.46898 * 109.47006 * 295.00220 * 11 10 9 14 14 C 1.46901 * 110.99830 * 154.99481 * 13 11 10 15 15 C 1.53000 * 109.47220 * 179.97438 * 14 13 11 16 16 H 1.09003 * 109.47180 * 55.00655 * 15 14 13 17 17 C 1.52997 * 109.47240 * 295.00423 * 15 14 13 18 18 C 1.53000 * 109.47240 * 180.02562 * 17 15 14 19 19 C 1.52997 * 109.47312 * 59.99972 * 18 17 15 20 20 C 1.52997 * 109.46991 * 300.00180 * 19 18 17 21 21 C 1.52997 * 109.47312 * 175.00395 * 15 14 13 22 22 H 1.09001 * 109.47679 * 59.99867 * 21 15 14 23 23 O 1.42908 * 109.47163 * 299.99990 * 21 15 14 24 24 C 1.50697 * 109.47239 * 174.99933 * 11 10 9 25 25 C 1.38244 * 119.99609 * 79.73078 * 24 11 10 26 26 C 1.38231 * 119.99550 * 179.80907 * 25 24 11 27 27 C 1.38234 * 120.00240 * 0.39728 * 26 25 24 28 28 C 1.38236 * 120.00131 * 359.85600 * 27 26 25 29 29 C 1.38232 * 120.00191 * 260.00377 * 24 11 10 30 30 H 0.96997 * 119.99721 * 0.02562 * 1 2 3 31 31 H 1.09006 * 109.46701 * 59.99735 * 9 7 2 32 32 H 1.09003 * 109.47315 * 300.00756 * 9 7 2 33 33 H 1.09007 * 109.46945 * 60.00611 * 10 9 7 34 34 H 1.08995 * 109.47339 * 299.99909 * 10 9 7 35 35 H 1.00900 * 111.00405 * 31.04805 * 13 11 10 36 36 H 1.09002 * 109.47499 * 300.00154 * 14 13 11 37 37 H 1.09008 * 109.47107 * 60.00023 * 14 13 11 38 38 H 1.09003 * 109.47224 * 300.00206 * 17 15 14 39 39 H 1.08997 * 109.47209 * 59.99787 * 17 15 14 40 40 H 1.08994 * 109.47149 * 299.99607 * 18 17 15 41 41 H 1.09004 * 109.47152 * 180.02562 * 18 17 15 42 42 H 1.08996 * 109.47039 * 180.02562 * 19 18 17 43 43 H 1.08996 * 109.47085 * 60.00232 * 19 18 17 44 44 H 1.09003 * 109.47224 * 299.99570 * 20 19 18 45 45 H 1.08997 * 109.47209 * 179.97438 * 20 19 18 46 46 H 0.96700 * 113.99689 * 179.97438 * 23 21 15 47 47 H 1.07997 * 119.99876 * 359.97438 * 25 24 11 48 48 H 1.08000 * 119.99463 * 180.22542 * 26 25 24 49 49 H 1.07996 * 120.00197 * 179.83246 * 27 26 25 50 50 H 1.07995 * 119.99990 * 179.97438 * 28 27 26 51 51 H 1.08000 * 120.00044 * 359.97438 * 29 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9872 -0.0001 12 1 0.7884 -5.0069 -0.8422 13 7 0.7281 -5.1189 1.2548 14 6 -0.4305 -6.0056 1.0835 15 6 -1.1869 -6.1183 2.4086 16 1 -1.4510 -5.1216 2.7622 17 6 -0.2987 -6.8086 3.4457 18 6 -1.0553 -6.9219 4.7707 19 6 -2.3289 -7.7436 4.5622 20 6 -3.2171 -7.0534 3.5251 21 6 -2.4608 -6.9398 2.2006 22 1 -2.1968 -7.9365 1.8470 23 8 -3.2904 -6.2951 1.2319 24 6 2.4549 -6.1298 -0.1240 25 6 3.1524 -6.5668 0.9868 26 6 4.0435 -7.6175 0.8740 27 6 4.2432 -8.2260 -0.3511 28 6 3.5496 -7.7857 -1.4628 29 6 2.6556 -6.7374 -1.3493 30 1 -0.4849 0.8400 -0.0004 31 1 0.6247 -2.5571 -0.8897 32 1 0.6239 -2.5567 0.8902 33 1 2.8719 -3.6044 0.8906 34 1 2.8719 -3.6044 -0.8894 35 1 0.4435 -4.2154 1.6024 36 1 -1.0924 -5.5955 0.3207 37 1 -0.0892 -6.9939 0.7751 38 1 -0.0346 -7.8053 3.0922 39 1 0.6088 -6.2234 3.5940 40 1 -1.3197 -5.9254 5.1245 41 1 -0.4224 -7.4132 5.5097 42 1 -2.8681 -7.8239 5.5060 43 1 -2.0644 -8.7401 4.2085 44 1 -3.4816 -6.0569 3.8788 45 1 -4.1242 -7.6391 3.3761 46 1 -4.1174 -6.7619 1.0493 47 1 2.9991 -6.0889 1.9431 48 1 4.5857 -7.9612 1.7425 49 1 4.9414 -9.0451 -0.4397 50 1 3.7059 -8.2608 -2.4199 51 1 2.1136 -6.3934 -2.2178 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000577955671.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:11 Heat of formation + Delta-G solvation = -63.480101 kcal Electronic energy + Delta-G solvation = -27195.773320 eV Core-core repulsion = 23671.933991 eV Total energy + Delta-G solvation = -3523.839329 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.52571 -38.97373 -36.43598 -35.52660 -33.49437 -32.38453 -30.60802 -30.26757 -29.95955 -29.38048 -26.31444 -24.25300 -23.41440 -22.46638 -22.21922 -21.08333 -20.79168 -19.96315 -19.38440 -17.25620 -16.69595 -16.24718 -15.57170 -15.28629 -15.01708 -14.72080 -14.58839 -14.43211 -14.10684 -13.77300 -13.65508 -13.32234 -13.05738 -12.93243 -12.83346 -12.45657 -12.26006 -12.17173 -11.96264 -11.65305 -11.52434 -11.40338 -10.94127 -10.93104 -10.90776 -10.80730 -10.66429 -10.53240 -10.45900 -10.35960 -10.08081 -9.78378 -9.69768 -9.35954 -9.10375 -8.62334 -8.34717 -8.28215 -7.95147 -5.99103 -4.01281 1.65977 1.71950 3.32013 3.39677 3.44134 4.08935 4.15953 4.44135 4.48087 4.63466 4.74996 4.95753 5.07929 5.13398 5.17161 5.22014 5.26075 5.32914 5.36782 5.40787 5.45267 5.47281 5.52467 5.70077 5.74460 5.82715 5.87056 5.93488 5.94605 5.96377 6.03468 6.06122 6.13238 6.19592 6.26753 6.34310 6.36189 6.43154 6.49999 6.57179 6.70925 6.77781 6.88483 6.99888 7.06646 7.31694 7.54888 7.63318 7.65114 7.80482 7.93452 8.00953 8.43260 9.05562 9.62962 11.11963 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.007855 B = 0.004330 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3563.904188 B = 6464.724456 C = 8972.286784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.107 4.107 11 C 0.124 3.876 12 H 0.047 0.953 13 N -0.682 5.682 14 C 0.069 3.931 15 C -0.075 4.075 16 H 0.077 0.923 17 C -0.102 4.102 18 C -0.125 4.125 19 C -0.116 4.116 20 C -0.151 4.151 21 C 0.110 3.890 22 H 0.051 0.949 23 O -0.562 6.562 24 C -0.057 4.057 25 C -0.087 4.087 26 C -0.130 4.130 27 C -0.134 4.134 28 C -0.127 4.127 29 C -0.122 4.122 30 H 0.259 0.741 31 H 0.013 0.987 32 H 0.017 0.983 33 H 0.058 0.942 34 H 0.054 0.946 35 H 0.354 0.646 36 H 0.038 0.962 37 H 0.061 0.939 38 H 0.057 0.943 39 H 0.083 0.917 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.071 0.929 45 H 0.060 0.940 46 H 0.372 0.628 47 H 0.129 0.871 48 H 0.114 0.886 49 H 0.112 0.888 50 H 0.114 0.886 51 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.270 -19.821 5.577 20.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.718 3.282 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.556 4.556 8 H 0.074 0.926 9 C -0.015 4.015 10 C -0.145 4.145 11 C 0.014 3.986 12 H 0.065 0.935 13 N -0.316 5.316 14 C -0.060 4.060 15 C -0.094 4.094 16 H 0.095 0.905 17 C -0.140 4.140 18 C -0.162 4.162 19 C -0.154 4.154 20 C -0.188 4.188 21 C 0.051 3.949 22 H 0.069 0.931 23 O -0.367 6.367 24 C -0.058 4.058 25 C -0.105 4.105 26 C -0.148 4.148 27 C -0.153 4.153 28 C -0.145 4.145 29 C -0.141 4.141 30 H 0.069 0.931 31 H 0.031 0.969 32 H 0.035 0.965 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.176 0.824 36 H 0.057 0.943 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.101 0.899 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.089 0.911 45 H 0.079 0.921 46 H 0.218 0.782 47 H 0.147 0.853 48 H 0.132 0.868 49 H 0.130 0.870 50 H 0.132 0.868 51 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -1.521 -19.745 5.835 20.645 hybrid contribution -0.707 1.048 -0.574 1.389 sum -2.228 -18.696 5.260 19.550 Atomic orbital electron populations 1.69975 1.06015 1.26455 1.50924 1.25014 0.94815 0.99211 0.95324 0.86563 0.80182 0.83894 0.77542 1.19728 1.21074 1.21033 1.21252 0.93069 0.90926 1.50387 0.92632 1.19130 0.93931 0.91550 0.96902 1.21817 0.99168 0.92234 1.01258 1.20555 0.93479 0.93472 0.91106 0.93487 1.60505 1.24089 1.18454 1.28575 1.21877 0.90998 0.97409 0.95741 1.21107 0.92522 0.99727 0.96034 0.90466 1.21461 0.98656 1.00645 0.93232 1.21618 0.96271 1.00323 0.97999 1.21477 0.96401 0.99036 0.98447 1.22253 0.98449 1.01717 0.96424 1.21808 0.90651 0.95238 0.87195 0.93114 1.86621 1.34752 1.53644 1.61656 1.20069 0.96875 0.95935 0.92921 1.21039 0.94614 0.95734 0.99122 1.21139 0.99142 0.97254 0.97243 1.21017 1.00441 1.00498 0.93297 1.20999 0.97545 0.97659 0.98258 1.21065 0.99152 0.96498 0.97382 0.93093 0.96888 0.96491 0.92279 0.92694 0.82377 0.94329 0.92057 0.92412 0.89851 0.91846 0.92043 0.92107 0.92124 0.91058 0.92145 0.78173 0.85323 0.86767 0.86966 0.86792 0.86587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.87 13.29 55.43 0.74 -26.13 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.52 -14.64 9.11 -34.44 -0.31 -14.95 16 8 H 0.06 1.54 7.74 -52.48 -0.41 1.14 16 9 C 0.02 0.56 4.80 -27.89 -0.13 0.42 16 10 C -0.11 -2.21 4.72 -26.73 -0.13 -2.34 16 11 C 0.12 2.16 2.24 -68.86 -0.15 2.01 16 12 H 0.05 0.88 7.66 -51.93 -0.40 0.48 16 13 N -0.68 -11.11 5.01 -107.95 -0.54 -11.65 16 14 C 0.07 1.03 4.79 -3.82 -0.02 1.02 16 15 C -0.08 -0.97 2.07 -90.62 -0.19 -1.16 16 16 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 17 C -0.10 -1.16 5.09 -26.73 -0.14 -1.30 16 18 C -0.12 -1.22 5.92 -26.73 -0.16 -1.38 16 19 C -0.12 -1.02 5.92 -26.73 -0.16 -1.17 16 20 C -0.15 -1.43 5.54 -26.76 -0.15 -1.58 16 21 C 0.11 1.24 2.90 -26.76 -0.08 1.17 16 22 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 23 O -0.56 -6.99 12.56 -35.23 -0.44 -7.44 16 24 C -0.06 -0.91 4.71 -104.62 -0.49 -1.40 16 25 C -0.09 -1.29 9.32 -39.58 -0.37 -1.66 16 26 C -0.13 -1.69 10.05 -39.59 -0.40 -2.09 16 27 C -0.13 -1.67 10.05 -39.58 -0.40 -2.07 16 28 C -0.13 -1.64 10.05 -39.58 -0.40 -2.04 16 29 C -0.12 -1.80 9.67 -39.58 -0.38 -2.19 16 30 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 31 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.02 0.45 6.43 -51.93 -0.33 0.11 16 33 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.35 6.49 6.47 -39.29 -0.25 6.24 16 36 H 0.04 0.66 7.45 -51.93 -0.39 0.27 16 37 H 0.06 0.91 8.00 -51.92 -0.42 0.49 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.08 1.04 7.75 -51.93 -0.40 0.64 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 45 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.37 2.94 9.08 45.56 0.41 3.35 16 47 H 0.13 1.91 7.73 -52.49 -0.41 1.51 16 48 H 0.11 1.24 8.06 -52.49 -0.42 0.81 16 49 H 0.11 1.12 8.06 -52.49 -0.42 0.70 16 50 H 0.11 1.22 8.06 -52.49 -0.42 0.79 16 51 H 0.12 1.62 8.04 -52.49 -0.42 1.19 16 LS Contribution 400.68 15.07 6.04 6.04 Total: -1.00 -30.65 400.68 -11.87 -42.51 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: -8.49 Total: 9.04 kcal Atomic # 6 Polarization: -25.00 SS G_CDS: -4.15 Total: -29.15 kcal Atomic # 7 Polarization: -37.98 SS G_CDS: 0.20 Total: -37.78 kcal Atomic # 8 Polarization: -6.99 SS G_CDS: -0.44 Total: -7.44 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -30.65 -11.87 -42.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577955671.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.967 kcal (2) G-P(sol) polarization free energy of solvation -30.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds